PDB Short entry for 2LM7 HEADER VIRAL PROTEIN 23-NOV-11 2LM7 TITLE NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7 IN MEMBRANE MIMICKING TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID GLYCOPROTEIN VP7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 266-326; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 578843; SOURCE 4 STRAIN: ISOLATE HUMAN/BELGIUM/4106/2000 G3-P11[14] KEYWDS ALPHA HELIX, AMPHIPATHIC, PERFORATING PEPTIDE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR S.ELAID,S.LIBERSOU,M.OULDALI,N.MORELLET,J.LEPAULT,S.BOUAZIZ REVDAT 2 06-NOV-19 2LM7 1 REMARK REVDAT 1 24-OCT-12 2LM7 0 JRNL AUTH S.ELAID,S.LIBERSOU,M.OULDALI,R.RHAYYAT,C.HENRY,N.MORELLET, JRNL AUTH 2 J.LEPAULT,S.BOUAZIZ JRNL TITL NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7 IN MEMBRANE JRNL TITL 2 MIMICKING MICELLES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000102553. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM VP7-61-1, 100 MM [U-100% REMARK 210 2H] DPC-2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 267 -178.63 64.69 REMARK 500 1 THR A 272 49.38 -144.06 REMARK 500 1 ALA A 273 25.26 -171.30 REMARK 500 1 PRO A 275 74.33 -68.26 REMARK 500 1 THR A 277 56.61 37.62 REMARK 500 1 ARG A 313 65.31 -112.58 REMARK 500 1 ARG A 315 77.19 68.34 REMARK 500 1 ALA A 321 39.14 -94.42 REMARK 500 2 ILE A 271 86.69 38.93 REMARK 500 2 THR A 272 -39.73 -131.78 REMARK 500 2 ALA A 273 -60.15 70.77 REMARK 500 2 ASP A 274 -63.23 101.54 REMARK 500 2 THR A 277 35.82 -83.23 REMARK 500 2 SER A 311 44.14 -104.95 REMARK 500 2 ARG A 315 145.20 70.87 REMARK 500 2 SER A 316 41.45 -82.80 REMARK 500 2 ASN A 318 -34.05 75.15 REMARK 500 3 ASP A 270 111.09 63.90 REMARK 500 3 THR A 276 109.49 -48.86 REMARK 500 3 ALA A 278 146.41 69.32 REMARK 500 3 MET A 310 71.66 54.40 REMARK 500 3 LYS A 312 -42.14 67.39 REMARK 500 3 ARG A 313 47.66 -94.38 REMARK 500 3 SER A 314 -176.59 64.10 REMARK 500 3 LEU A 317 -53.67 72.22 REMARK 500 3 TYR A 323 -73.16 69.34 REMARK 500 3 ARG A 325 -12.82 72.93 REMARK 500 4 ASP A 270 115.58 -171.59 REMARK 500 4 THR A 272 70.27 61.45 REMARK 500 4 PRO A 279 62.07 -65.91 REMARK 500 4 SER A 311 23.05 -149.94 REMARK 500 4 ARG A 313 -71.47 -82.72 REMARK 500 4 SER A 316 32.57 -93.78 REMARK 500 4 PHE A 322 67.42 -154.36 REMARK 500 4 TYR A 324 -37.61 -147.24 REMARK 500 4 ARG A 325 -18.87 75.74 REMARK 500 5 LEU A 269 71.17 -106.00 REMARK 500 5 ALA A 273 36.99 70.84 REMARK 500 5 ASN A 318 -4.81 70.01 REMARK 500 5 TYR A 323 -79.35 -101.90 REMARK 500 5 TYR A 324 -57.18 -179.04 REMARK 500 5 ARG A 325 -70.99 -149.58 REMARK 500 6 ILE A 271 95.55 -61.48 REMARK 500 6 THR A 276 11.15 57.86 REMARK 500 6 LYS A 312 32.50 -166.16 REMARK 500 6 PHE A 322 -79.01 -110.68 REMARK 500 6 TYR A 323 -78.37 -138.96 REMARK 500 6 TYR A 324 75.91 -168.40 REMARK 500 7 ALA A 278 80.49 -167.08 REMARK 500 7 GLN A 280 48.52 -96.33 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KVL RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7 REMARK 900 RELATED ID: 3FMG RELATED DB: PDB REMARK 900 STRUCTURE OF ROTAVIRUS OUTER-LAYER PROTEIN VP7 BOUND WITH A REMARK 900 NEUTRALIZING FAB DBREF 2LM7 A 266 326 UNP Q3ZK60 VP7_ROT41 266 326 SEQRES 1 A 61 SER ASP VAL LEU ASP ILE THR ALA ASP PRO THR THR ALA SEQRES 2 A 61 PRO GLN THR GLU ARG MET MET ARG ILE ASN TRP LYS LYS SEQRES 3 A 61 TRP TRP GLN VAL PHE TYR THR VAL VAL ASP TYR VAL ASN SEQRES 4 A 61 GLN ILE ILE GLN LEU MET SER LYS ARG SER ARG SER LEU SEQRES 5 A 61 ASN SER ALA ALA PHE TYR TYR ARG VAL HELIX 1 1 GLN A 280 ARG A 313 1 34 HELIX 2 2 SER A 316 ALA A 321 1 6 HELIX 3 3 ALA A 321 VAL A 326 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000