PDB Short entry for 2LMC HEADER TRANSCRIPTION 29-NOV-11 2LMC TITLE STRUCTURE OF T7 TRANSCRIPTION FACTOR GP2-E. COLI RNAP JAW DOMAIN TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL RNA POLYMERASE INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 1151-1213; COMPND 9 SYNONYM: RNAP SUBUNIT BETA, RNA POLYMERASE SUBUNIT BETA, COMPND 10 TRANSCRIPTASE SUBUNIT BETA; COMPND 11 EC: 2.7.7.6; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 3 ORGANISM_TAXID: 10760; SOURCE 4 GENE: 2, GP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28B+; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K12; SOURCE 12 GENE: B3988, JW3951, RNAP, RPOC, TABB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR: PET28B+ KEYWDS TRANSFERASE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 MDLTYP MINIMIZED AVERAGE AUTHOR M.LIU REVDAT 3 03-OCT-12 2LMC 1 JRNL REVDAT 2 01-AUG-12 2LMC 1 JRNL REVDAT 1 14-MAR-12 2LMC 0 JRNL AUTH E.JAMES,M.LIU,C.SHEPPARD,V.MEKLER,B.CAMARA,B.LIU,P.SIMPSON, JRNL AUTH 2 E.COTA,K.SEVERINOV,S.MATTHEWS,S.WIGNESHWERARAJ JRNL TITL STRUCTURAL AND MECHANISTIC BASIS FOR THE INHIBITION OF JRNL TITL 2 ESCHERICHIA COLI RNA POLYMERASE BY T7 GP2. JRNL REF MOL.CELL V. 47 755 2012 JRNL REFN ISSN 1097-2765 JRNL PMID 22819324 JRNL DOI 10.1016/J.MOLCEL.2012.06.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB102558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 MM [U-100% 13C; U-100% 15N] REMARK 210 GP2-JAW COMPLEX, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DPX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 VAL A 24 REMARK 465 ASN A 25 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 LYS B 22 REMARK 465 GLU B 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 28 -148.43 62.75 REMARK 500 1 LEU A 29 93.70 62.94 REMARK 500 1 SER A 30 -76.27 -83.09 REMARK 500 1 SER A 42 -162.94 -103.07 REMARK 500 1 GLU A 44 -45.02 -138.06 REMARK 500 1 ALA A 82 87.49 54.49 REMARK 500 1 PRO A 83 128.33 -39.99 REMARK 500 1 ALA B 25 -87.80 -146.93 REMARK 500 1 LYS B 41 -81.73 -142.94 REMARK 500 1 LYS B 43 -163.60 -113.38 REMARK 500 1 VAL B 80 -79.52 -154.02 REMARK 500 1 ILE B 81 -50.24 -120.33 REMARK 500 2 SER A 30 -142.93 -95.51 REMARK 500 2 ALA B 25 -90.35 -119.56 REMARK 500 2 LYS B 41 89.86 43.37 REMARK 500 2 GLN B 66 94.73 -68.26 REMARK 500 2 VAL B 80 -63.71 -179.74 REMARK 500 2 ILE B 81 -51.50 -120.60 REMARK 500 2 SER B 82 117.90 -170.52 REMARK 500 3 VAL A 31 -41.90 60.51 REMARK 500 3 ASP A 32 75.20 61.19 REMARK 500 3 HIS A 45 131.63 -171.95 REMARK 500 3 ALA B 25 -145.96 -80.83 REMARK 500 3 THR B 40 -89.04 -75.13 REMARK 500 3 VAL B 80 -59.76 -175.43 REMARK 500 3 ILE B 81 -51.30 -121.10 REMARK 500 4 SER A 28 -85.79 -145.02 REMARK 500 4 SER A 30 -155.55 -179.83 REMARK 500 4 THR A 75 -58.99 -124.70 REMARK 500 4 VAL A 81 -83.58 -105.23 REMARK 500 4 ALA B 25 -154.16 -96.82 REMARK 500 4 THR B 40 -82.22 -65.34 REMARK 500 4 LYS B 41 -59.47 -129.05 REMARK 500 4 ASP B 52 -67.96 -133.10 REMARK 500 4 VAL B 80 -57.71 -171.41 REMARK 500 4 ILE B 81 -51.48 -120.15 REMARK 500 5 SER A 30 -70.78 -71.01 REMARK 500 5 SER A 42 -161.21 -105.39 REMARK 500 5 ALA B 25 -146.37 -94.04 REMARK 500 5 THR B 40 -78.99 -66.89 REMARK 500 5 LYS B 41 -66.28 -138.25 REMARK 500 5 VAL B 80 -61.79 -174.52 REMARK 500 6 CYS A 80 89.80 -66.78 REMARK 500 6 ALA B 25 -130.38 -113.40 REMARK 500 6 THR B 40 -85.23 -70.04 REMARK 500 6 LYS B 41 -73.15 -130.93 REMARK 500 6 ARG B 44 118.66 -160.70 REMARK 500 6 ASP B 52 -64.05 -102.43 REMARK 500 6 VAL B 80 -65.68 -176.06 REMARK 500 6 ILE B 81 -52.08 -121.17 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18111 RELATED DB: BMRB DBREF 2LMC A 21 80 UNP P03704 VRPI_BPT7 1 60 DBREF 2LMC B 22 84 UNP P0A8T7 RPOC_ECOLI 1151 1213 SEQADV 2LMC MET A 1 UNP P03704 EXPRESSION TAG SEQADV 2LMC GLY A 2 UNP P03704 EXPRESSION TAG SEQADV 2LMC SER A 3 UNP P03704 EXPRESSION TAG SEQADV 2LMC SER A 4 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 5 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 6 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 7 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 8 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 9 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 10 UNP P03704 EXPRESSION TAG SEQADV 2LMC SER A 11 UNP P03704 EXPRESSION TAG SEQADV 2LMC SER A 12 UNP P03704 EXPRESSION TAG SEQADV 2LMC GLY A 13 UNP P03704 EXPRESSION TAG SEQADV 2LMC LEU A 14 UNP P03704 EXPRESSION TAG SEQADV 2LMC VAL A 15 UNP P03704 EXPRESSION TAG SEQADV 2LMC PRO A 16 UNP P03704 EXPRESSION TAG SEQADV 2LMC ARG A 17 UNP P03704 EXPRESSION TAG SEQADV 2LMC GLY A 18 UNP P03704 EXPRESSION TAG SEQADV 2LMC SER A 19 UNP P03704 EXPRESSION TAG SEQADV 2LMC HIS A 20 UNP P03704 EXPRESSION TAG SEQADV 2LMC VAL A 81 UNP P03704 EXPRESSION TAG SEQADV 2LMC ALA A 82 UNP P03704 EXPRESSION TAG SEQADV 2LMC PRO A 83 UNP P03704 EXPRESSION TAG SEQADV 2LMC LYS A 84 UNP P03704 EXPRESSION TAG SEQADV 2LMC MET B 1 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC GLY B 2 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC SER B 3 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC SER B 4 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 5 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 6 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 7 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 8 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 9 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 10 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC SER B 11 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC SER B 12 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC GLY B 13 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC LEU B 14 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC VAL B 15 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC PRO B 16 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC ARG B 17 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC GLY B 18 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC SER B 19 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC HIS B 20 UNP P0A8T7 EXPRESSION TAG SEQADV 2LMC MET B 21 UNP P0A8T7 EXPRESSION TAG SEQRES 1 A 84 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 84 LEU VAL PRO ARG GLY SER HIS MET SER ASN VAL ASN THR SEQRES 3 A 84 GLY SER LEU SER VAL ASP ASN LYS LYS PHE TRP ALA THR SEQRES 4 A 84 VAL GLU SER SER GLU HIS SER PHE GLU VAL PRO ILE TYR SEQRES 5 A 84 ALA GLU THR LEU ASP GLU ALA LEU GLU LEU ALA GLU TRP SEQRES 6 A 84 GLN TYR VAL PRO ALA GLY PHE GLU VAL THR ARG VAL ARG SEQRES 7 A 84 PRO CYS VAL ALA PRO LYS SEQRES 1 B 84 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 84 LEU VAL PRO ARG GLY SER HIS MET LYS GLU PRO ALA ILE SEQRES 3 B 84 LEU ALA GLU ILE SER GLY ILE VAL SER PHE GLY LYS GLU SEQRES 4 B 84 THR LYS GLY LYS ARG ARG LEU VAL ILE THR PRO VAL ASP SEQRES 5 B 84 GLY SER ASP PRO TYR GLU GLU MET ILE PRO LYS TRP ARG SEQRES 6 B 84 GLN LEU ASN VAL PHE GLU GLY GLU ARG VAL GLU ARG GLY SEQRES 7 B 84 ASP VAL ILE SER ASP GLY HELIX 1 1 THR A 55 GLN A 66 1 12 HELIX 2 2 TYR A 67 GLY A 71 5 5 SHEET 1 A 3 SER A 46 PRO A 50 0 SHEET 2 A 3 PHE A 36 GLU A 41 -1 N ALA A 38 O VAL A 49 SHEET 3 A 3 GLU A 73 PRO A 79 -1 O GLU A 73 N GLU A 41 SHEET 1 B 4 TYR B 57 PRO B 62 0 SHEET 2 B 4 LYS B 43 THR B 49 -1 N LEU B 46 O GLU B 59 SHEET 3 B 4 GLY B 32 GLY B 37 -1 N ILE B 33 O THR B 49 SHEET 4 B 4 GLU B 73 VAL B 75 -1 O VAL B 75 N GLY B 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000