PDB Short entry for 2LS1 HEADER ANTIMICROBIAL PROTEIN 18-APR-12 2LS1 TITLE STRUCTURE OF SVICEUCIN, AN ANTIBACTERIAL TYPE I LASSO PEPTIDE FROM TITLE 2 STREPTOMYCES SVICEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 37-56; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SVICEUS; SOURCE 3 ORGANISM_TAXID: 463191; SOURCE 4 ATCC: 29083; SOURCE 5 GENE: SSEG_05172; SOURCE 6 EXPRESSION_SYSTEM: STREPTOMYCES COELICOLOR; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1902; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M1154; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: COSMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PWED4 KEYWDS MACROLACTAM RING, ANTIMICROBIAL PEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.LI,R.DUCASSE,A.BLOND,S.ZIRAH,C.GOULARD,E.LESCOP,E.GUITTET, AUTHOR 2 J.PERNODET,S.REBUFFAT REVDAT 2 14-JUN-23 2LS1 1 REMARK LINK REVDAT 1 15-AUG-12 2LS1 0 JRNL AUTH Y.LI,R.DUCASSE,A.BLOND,S.ZIRAH,C.GOULARD,E.LESCOP,E.GUITTET, JRNL AUTH 2 J.PERNODET,S.REBUFFAT JRNL TITL STRUCTURE AND BIOSYNTHESIS OF SVICEUCIN, AN ANTIBACTERIAL JRNL TITL 2 TYPE I LASSO PEPTIDE FROM STREPTOMYCES SVICEUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, X-PLOR REMARK 3 AUTHORS : NEIDIG, GEYER, GORLER, ANTZ, SAFFRICH, BENEICKE, REMARK 3 KALBITZER (TOPSPIN), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000102761. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.4 MM SVICEUCIN, METHANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-13C HSQC; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 7 -144.61 -114.32 REMARK 500 1 ASP A 9 -98.46 -87.81 REMARK 500 1 TRP A 17 -74.44 -91.67 REMARK 500 2 CYS A 7 -137.78 -106.88 REMARK 500 2 ASP A 9 -98.71 -89.15 REMARK 500 3 CYS A 7 -145.19 -113.54 REMARK 500 3 ASP A 9 -100.70 -88.49 REMARK 500 3 TRP A 17 -73.26 -86.82 REMARK 500 4 CYS A 7 -153.93 -111.12 REMARK 500 4 ASP A 9 -98.36 -88.12 REMARK 500 4 TRP A 17 -66.46 -104.01 REMARK 500 4 CYS A 19 -49.87 -150.23 REMARK 500 5 VAL A 2 -165.19 -124.89 REMARK 500 5 CYS A 7 -145.47 -114.59 REMARK 500 5 ASP A 9 -100.21 -88.78 REMARK 500 5 TRP A 17 -75.84 -89.95 REMARK 500 6 CYS A 7 -133.37 -117.57 REMARK 500 6 ASP A 9 -98.25 -88.71 REMARK 500 7 VAL A 2 -167.08 -125.10 REMARK 500 7 CYS A 7 -145.49 -109.38 REMARK 500 7 ASP A 9 -99.02 -88.24 REMARK 500 7 TRP A 17 -75.07 -88.81 REMARK 500 7 CYS A 19 -52.01 -123.50 REMARK 500 8 CYS A 7 -140.12 -110.88 REMARK 500 8 ASP A 9 -99.56 -88.66 REMARK 500 8 CYS A 13 -68.44 -138.54 REMARK 500 9 CYS A 7 -144.78 -114.18 REMARK 500 9 ASP A 9 -98.79 -87.96 REMARK 500 9 TRP A 17 -72.68 -87.58 REMARK 500 9 CYS A 19 -52.89 -140.72 REMARK 500 10 VAL A 2 -167.45 -124.17 REMARK 500 10 CYS A 7 -145.44 -109.49 REMARK 500 10 ASP A 9 -98.63 -88.02 REMARK 500 10 TRP A 17 -74.38 -88.04 REMARK 500 10 CYS A 19 -52.16 -124.47 REMARK 500 11 VAL A 2 -168.03 -126.73 REMARK 500 11 CYS A 7 -153.22 -105.72 REMARK 500 11 ASP A 9 -100.26 -89.13 REMARK 500 11 TRP A 17 -65.73 -106.19 REMARK 500 11 CYS A 19 -60.09 -150.11 REMARK 500 12 CYS A 7 -143.75 -98.69 REMARK 500 12 ASP A 9 -100.94 -88.82 REMARK 500 12 TRP A 17 -67.45 -101.13 REMARK 500 13 CYS A 7 -131.77 -119.79 REMARK 500 13 ASP A 9 -98.95 -88.78 REMARK 500 13 CYS A 19 -52.15 -145.63 REMARK 500 14 CYS A 7 -155.51 -101.30 REMARK 500 14 ASP A 9 -98.74 -88.61 REMARK 500 15 CYS A 7 -154.55 -105.86 REMARK 500 15 ASP A 9 -99.17 -88.21 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18405 RELATED DB: BMRB DBREF 2LS1 A 1 20 UNP B5I0A0 B5I0A0_9ACTO 37 56 SEQRES 1 A 20 CYS VAL TRP GLY GLY ASP CYS THR ASP PHE LEU GLY CYS SEQRES 2 A 20 GLY THR ALA TRP ILE CYS VAL SHEET 1 A 2 CYS A 7 THR A 8 0 SHEET 2 A 2 THR A 15 ALA A 16 -1 O ALA A 16 N CYS A 7 SSBOND 1 CYS A 1 CYS A 13 1555 1555 2.03 SSBOND 2 CYS A 7 CYS A 19 1555 1555 2.03 LINK N CYS A 1 CG ASP A 9 1555 1555 1.36 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000