PDB Short entry for 2LW7 HEADER LIGASE 24-JUL-12 2LW7 TITLE NMR SOLUTION STRUCTURE OF HUMAN HISRS SPLICE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE--TRNA LIGASE, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-59, UNP RESIDUES 399-509; COMPND 5 SYNONYM: HISTIDYL-TRNA SYNTHETASE, HISRS; COMPND 6 EC: 6.1.1.21; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HARS, HRS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET32 KEYWDS SYNTHETASE, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.YE,Z.WEI,J.WU,P.SCHIMMEL,M.ZHANG REVDAT 2 14-JUN-23 2LW7 1 SEQADV REVDAT 1 04-SEP-13 2LW7 0 JRNL AUTH F.YE,Z.WEI,J.WU,P.SCHIMMEL,M.ZHANG JRNL TITL NMR SOLUTION STRUCTURE OF HUMAN HISRS SPLICE VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102908. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 ENTITY-1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 2D 1H-1H NOESY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 94 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 128 H LEU A 132 1.58 REMARK 500 O GLU A 131 N VAL A 136 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 25 -145.25 44.06 REMARK 500 1 SER A 26 68.13 88.56 REMARK 500 1 VAL A 54 159.72 59.09 REMARK 500 1 LYS A 59 -76.04 -121.27 REMARK 500 1 ALA A 60 -76.42 -156.02 REMARK 500 1 GLU A 62 156.50 60.76 REMARK 500 1 THR A 67 118.83 -161.68 REMARK 500 1 THR A 68 -55.26 -163.60 REMARK 500 1 ALA A 77 -168.48 -102.88 REMARK 500 1 GLN A 78 127.86 63.54 REMARK 500 1 LYS A 80 -165.22 -172.94 REMARK 500 1 TYR A 103 24.55 -177.80 REMARK 500 1 LYS A 105 78.35 69.26 REMARK 500 1 ASN A 106 137.89 179.24 REMARK 500 1 PRO A 107 -91.95 -73.66 REMARK 500 1 PRO A 122 -71.03 -80.81 REMARK 500 1 ILE A 127 -154.34 -82.04 REMARK 500 1 VAL A 136 178.61 161.99 REMARK 500 1 SER A 141 57.43 -106.78 REMARK 500 1 ARG A 145 -89.95 -114.24 REMARK 500 1 GLU A 146 -57.88 178.03 REMARK 500 1 ARG A 151 58.13 -108.61 REMARK 500 1 ARG A 152 -53.95 67.71 REMARK 500 1 LEU A 167 124.80 63.33 REMARK 500 2 ALA A 25 -151.19 42.81 REMARK 500 2 SER A 26 73.51 88.06 REMARK 500 2 LYS A 52 -46.85 -151.54 REMARK 500 2 LEU A 55 -44.86 -161.18 REMARK 500 2 LYS A 56 117.51 62.55 REMARK 500 2 GLU A 62 -46.63 -160.48 REMARK 500 2 LYS A 64 -72.15 -135.48 REMARK 500 2 ILE A 65 112.39 -171.82 REMARK 500 2 THR A 67 78.10 63.35 REMARK 500 2 THR A 68 -35.14 176.24 REMARK 500 2 GLN A 78 -71.59 67.94 REMARK 500 2 LEU A 102 -85.58 -137.94 REMARK 500 2 TYR A 103 25.59 41.46 REMARK 500 2 LYS A 105 -35.25 174.25 REMARK 500 2 LYS A 108 84.57 87.83 REMARK 500 2 LEU A 109 -13.92 75.36 REMARK 500 2 ILE A 121 -55.05 178.64 REMARK 500 2 PRO A 122 -82.10 -61.51 REMARK 500 2 ILE A 127 110.50 -166.72 REMARK 500 2 GLU A 129 -64.07 -175.93 REMARK 500 2 ILE A 137 112.23 -162.58 REMARK 500 2 ARG A 145 -133.46 -114.77 REMARK 500 2 GLU A 146 -75.28 -135.19 REMARK 500 3 ALA A 25 174.58 44.39 REMARK 500 3 SER A 26 -55.71 172.96 REMARK 500 3 ALA A 27 -56.54 76.45 REMARK 500 REMARK 500 THIS ENTRY HAS 499 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18612 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMINO ACIDS (UNP RESIDUES 61-398) ARE MISSING BECAUSE OF DELETION REMARK 999 MUTATION. DBREF 2LW7 A 1 59 UNP P12081 SYHC_HUMAN 2 60 DBREF 2LW7 A 60 170 UNP P12081 SYHC_HUMAN 399 509 SEQADV 2LW7 GLN A 93 UNP P12081 TRP 432 ENGINEERED MUTATION SEQADV 2LW7 SER A 168 UNP P12081 CYS 507 ENGINEERED MUTATION SEQADV 2LW7 SER A 170 UNP P12081 CYS 509 ENGINEERED MUTATION SEQRES 1 A 170 ALA GLU ARG ALA ALA LEU GLU GLU LEU VAL LYS LEU GLN SEQRES 2 A 170 GLY GLU ARG VAL ARG GLY LEU LYS GLN GLN LYS ALA SER SEQRES 3 A 170 ALA GLU LEU ILE GLU GLU GLU VAL ALA LYS LEU LEU LYS SEQRES 4 A 170 LEU LYS ALA GLN LEU GLY PRO ASP GLU SER LYS GLN LYS SEQRES 5 A 170 PHE VAL LEU LYS THR PRO LYS ALA LEU GLU GLU LYS ILE SEQRES 6 A 170 ARG THR THR GLU THR GLN VAL LEU VAL ALA SER ALA GLN SEQRES 7 A 170 LYS LYS LEU LEU GLU GLU ARG LEU LYS LEU VAL SER GLU SEQRES 8 A 170 LEU GLN ASP ALA GLY ILE LYS ALA GLU LEU LEU TYR LYS SEQRES 9 A 170 LYS ASN PRO LYS LEU LEU ASN GLN LEU GLN TYR CYS GLU SEQRES 10 A 170 GLU ALA GLY ILE PRO LEU VAL ALA ILE ILE GLY GLU GLN SEQRES 11 A 170 GLU LEU LYS ASP GLY VAL ILE LYS LEU ARG SER VAL THR SEQRES 12 A 170 SER ARG GLU GLU VAL ASP VAL ARG ARG GLU ASP LEU VAL SEQRES 13 A 170 GLU GLU ILE LYS ARG ARG THR GLY GLN PRO LEU SER ILE SEQRES 14 A 170 SER HELIX 1 1 ALA A 1 LYS A 24 1 24 HELIX 2 2 SER A 26 GLY A 45 1 20 HELIX 3 3 LEU A 82 GLY A 96 1 15 HELIX 4 4 LEU A 109 ALA A 119 1 11 HELIX 5 5 GLY A 128 GLY A 135 1 8 HELIX 6 6 ARG A 152 GLY A 164 1 13 SHEET 1 A 2 VAL A 72 SER A 76 0 SHEET 2 A 2 LEU A 123 ILE A 127 1 O ALA A 125 N ALA A 75 SHEET 1 B 2 ILE A 137 LYS A 138 0 SHEET 2 B 2 ASP A 149 VAL A 150 -1 O VAL A 150 N ILE A 137 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000