PDB Short entry for 2LWS HEADER PLANT PROTEIN 06-AUG-12 2LWS TITLE NMR SOLUTION STRUCTURE OF PAWS DERIVED PEPTIDE 4 (PDP-4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAWS DERIVED PEPTIDE 4 (PDP-4); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS PLANT PEPTIDE, PAWS DERIVED, CYCLIC PEPTIDE, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.G.ELLIOTT,J.S.MYLNE,K.ROSENGREN REVDAT 3 14-JUN-23 2LWS 1 REMARK LINK REVDAT 2 01-JUN-16 2LWS 1 JRNL REVDAT 1 21-AUG-13 2LWS 0 JRNL AUTH A.G.ELLIOTT,C.DELAY,H.LIU,Z.PHUA,K.J.ROSENGREN,A.H.BENFIELD, JRNL AUTH 2 J.L.PANERO,M.L.COLGRAVE,A.S.JAYASENA,K.M.DUNSE,M.A.ANDERSON, JRNL AUTH 3 E.E.SCHILLING,D.ORTIZ-BARRIENTOS,D.J.CRAIK,J.S.MYLNE JRNL TITL EVOLUTIONARY ORIGINS OF A BIOACTIVE PEPTIDE BURIED WITHIN JRNL TITL 2 PREPROALBUMIN. JRNL REF PLANT CELL V. 26 981 2014 JRNL REFN ISSN 1040-4651 JRNL PMID 24681618 JRNL DOI 10.1105/TPC.114.123620 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102929. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MG/ML PDP-4, 80% H2O/10% REMARK 210 D2O/10% DMSO; 5 MG/ML PDP-4, 90% REMARK 210 D2O / 10% DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-13C HSQC; 2D REMARK 210 1H-1H ECOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, XEASY, CYANA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 -ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, FAVOURABLE NON REMARK 210 -BONDED ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PAWS DERIVED PEPTIDE 4 (PDP-4) IS CYCLIC PEPTIDE, A MEMBER OF REMARK 400 ENZYME INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PAWS DERIVED PEPTIDE 4 (PDP-4) REMARK 400 CHAIN: A REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 46.06 -90.97 REMARK 500 1 PHE A 4 79.80 -150.10 REMARK 500 2 SER A 2 46.14 -90.94 REMARK 500 3 SER A 2 46.02 -90.95 REMARK 500 3 PHE A 4 79.83 -150.11 REMARK 500 4 SER A 2 45.97 -91.04 REMARK 500 4 PHE A 4 79.77 -150.15 REMARK 500 5 SER A 2 45.74 -90.73 REMARK 500 5 PHE A 4 79.88 -150.16 REMARK 500 5 ARG A 11 48.02 -90.38 REMARK 500 6 SER A 2 45.97 -90.87 REMARK 500 6 PHE A 4 79.87 -150.10 REMARK 500 7 SER A 2 45.98 -90.91 REMARK 500 7 PHE A 4 79.87 -150.14 REMARK 500 8 SER A 2 45.94 -90.85 REMARK 500 8 PHE A 4 80.00 -150.17 REMARK 500 9 SER A 2 46.04 -90.98 REMARK 500 9 PHE A 4 79.93 -150.12 REMARK 500 10 SER A 2 46.05 -90.93 REMARK 500 10 PHE A 4 80.01 -150.18 REMARK 500 11 SER A 2 45.87 -90.88 REMARK 500 11 PHE A 4 80.00 -150.16 REMARK 500 11 PHE A 9 66.30 -119.89 REMARK 500 12 SER A 2 45.95 -91.02 REMARK 500 12 PHE A 4 79.95 -150.11 REMARK 500 12 ARG A 11 56.62 -97.48 REMARK 500 13 SER A 2 46.04 -90.98 REMARK 500 13 PHE A 4 79.92 -150.14 REMARK 500 13 ARG A 11 50.22 -92.01 REMARK 500 14 SER A 2 45.95 -90.91 REMARK 500 14 PHE A 4 79.73 -150.08 REMARK 500 14 ARG A 11 53.12 -95.75 REMARK 500 15 SER A 2 45.92 -90.95 REMARK 500 15 PHE A 4 79.63 -150.10 REMARK 500 15 ARG A 11 39.97 -96.35 REMARK 500 16 SER A 2 41.62 -91.01 REMARK 500 16 PHE A 4 79.60 -150.24 REMARK 500 16 ARG A 11 61.76 -104.73 REMARK 500 17 SER A 2 41.49 -90.96 REMARK 500 17 PHE A 4 79.69 -150.06 REMARK 500 17 ARG A 11 61.07 -106.44 REMARK 500 18 SER A 2 41.47 -90.85 REMARK 500 18 PHE A 4 79.80 -150.14 REMARK 500 19 SER A 2 41.47 -90.96 REMARK 500 19 PHE A 4 79.84 -150.18 REMARK 500 20 SER A 2 41.50 -90.98 REMARK 500 20 PHE A 4 79.77 -150.22 REMARK 500 20 PHE A 9 65.54 -119.95 REMARK 500 20 ARG A 11 46.53 -96.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18643 RELATED DB: BMRB REMARK 900 RELATED ID: 2LWQ RELATED DB: PDB REMARK 900 RELATED ID: 2LWT RELATED DB: PDB REMARK 900 RELATED ID: 2LWU RELATED DB: PDB REMARK 900 RELATED ID: 2LWV RELATED DB: PDB DBREF 2LWS A 1 12 PDB 2LWS 2LWS 1 12 SEQRES 1 A 12 GLY SER CYS PHE GLY ALA PHE CYS PHE ARG ARG ASP HELIX 1 1 PHE A 4 CYS A 8 5 5 SSBOND 1 CYS A 3 CYS A 8 1555 1555 1.98 LINK N GLY A 1 C ASP A 12 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000