PDB Short entry for 2LXU HEADER RNA BINDING PROTEIN 31-AUG-12 2LXU TITLE SOLUTION NMR STRUCTURE OF THE EUKARYOTIC RNA RECOGNITION MOTIF, RRM1, TITLE 2 FROM THE HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H FROM HOMO SAPIENS, TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR8614A COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 7-111; COMPND 5 SYNONYM: HNRNP H, HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN H, N- COMPND 6 TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNRNPH1, HNRPH, HNRPH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15AVI6HT_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,Y.YANG,K.PEDERSON,R.SHASTRY,E.KOHAN,H.JANJUA,R.XIAO, AUTHOR 2 T.B.ACTON,J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE,M.A.KENNEDY, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2LXU 1 REMARK SEQADV REVDAT 1 31-OCT-12 2LXU 0 JRNL AUTH T.A.RAMELOT,Y.YANG,K.PEDERSON,R.SHASTRY,E.KOHAN,H.JANJUA, JRNL AUTH 2 R.XIAO,T.B.ACTON,J.K.EVERETT,J.H.PRESTEGARD,G.T.MONTELIONE, JRNL AUTH 3 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE EUKARYOTIC RNA RECOGNITION JRNL TITL 2 MOTIF, RRM1, FROM THE HETEROGENEOUS NUCLEAR JRNL TITL 3 RIBONUCLEOPROTEIN H FROM HOMO SAPIENS, NORTHEAST STRUCTURAL JRNL TITL 4 GENOMICS CONSORTIUM (NESG) TARGET HR8614A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS CNS_SOLVE_1.3, CYANA 3.0, AUTOSTRUCTURE ASDP REMARK 3 -1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN EXPLICIT WATER REMARK 4 REMARK 4 2LXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000102967. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 HR8614A.007, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 90% H2O/10% D2O; 0.8 MM REMARK 210 [BIOSYNTHETICALLY DIRECTED-5% REMARK 210 13C; U-100% 15N] HR8614A.008, 20 REMARK 210 MM MES, 100 MM SODIUM CHLORIDE, REMARK 210 5 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 50 UM DSS, 90% H2O/10% D2O; 1.0 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 HR8614A.007, 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 50 UM DSS, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D 1H-13C AROM REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-15N NOESY; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 NUS 1H-13C NOESY ALIPHATIC; 2D REMARK 210 1H-15N HSQC NH2 ONLY; 4D 13C-13C- REMARK 210 HMQC-NOESY-HMQC; 1D T1 NHSQC REMARK 210 ARRAY; 1D T2 NHSQC ARRAY; 2D 1H- REMARK 210 13C HSQC AROM CT; 2D 1H-13C HSQC REMARK 210 AROM NOCT; 2D 1H-15N HSQC_HIS; REMARK 210 2D 1H-15N HETERONUCLEAR NOE REMARK 210 INTERLEAVED REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS CNS_SOLVE_1.3, CYANA 3.0, REMARK 210 AUTOSTRUCTURE ASDP-1.0, NMRPIPE REMARK 210 NMRPIPE-201109, TOPSPIN 2.1.4 REMARK 210 AND 3.1, VNMRJ 1.1 D, PINE PINE REMARK 210 SERVER V.2.0, SPARKY 3.113, REMARK 210 TALOS+ 1.2009.0721.18, PALES REMARK 210 PALES_LINUX 2000, PSVS 1.4, REMARK 210 FMCGUI FMCGUI_2.5_LINUX REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 31 38.96 -95.72 REMARK 500 1 ARG A 75 -44.51 150.64 REMARK 500 1 HIS A 80 -40.36 -179.04 REMARK 500 1 THR A 100 94.15 -56.41 REMARK 500 1 ASN A 109 88.13 -67.39 REMARK 500 2 ASP A 74 -25.05 -32.28 REMARK 500 2 ARG A 75 -6.40 -142.77 REMARK 500 2 SER A 88 -154.10 -125.67 REMARK 500 2 THR A 100 86.13 -65.06 REMARK 500 2 PRO A 102 92.82 -64.40 REMARK 500 2 SER A 104 91.02 61.15 REMARK 500 2 PRO A 105 91.73 -50.78 REMARK 500 2 ASP A 110 95.34 66.44 REMARK 500 3 PHE A 31 35.68 -99.73 REMARK 500 3 ASP A 74 23.17 -66.93 REMARK 500 3 ARG A 75 -23.66 -142.86 REMARK 500 3 HIS A 80 -36.29 -145.33 REMARK 500 3 SER A 88 -149.56 -134.87 REMARK 500 3 HIS A 99 -71.87 -171.95 REMARK 500 3 THR A 100 -167.70 179.26 REMARK 500 3 SER A 104 92.47 56.25 REMARK 500 3 THR A 107 90.02 -62.60 REMARK 500 3 ALA A 108 25.93 -141.01 REMARK 500 3 ASP A 110 -176.99 65.60 REMARK 500 4 GLU A 9 98.17 -68.56 REMARK 500 4 PHE A 31 37.07 -94.83 REMARK 500 4 MET A 78 -86.14 -70.90 REMARK 500 4 HIS A 80 -55.67 -170.22 REMARK 500 4 SER A 88 -151.58 -136.11 REMARK 500 4 HIS A 99 -86.79 -156.74 REMARK 500 4 THR A 100 -163.42 -163.36 REMARK 500 4 ASN A 103 132.90 67.19 REMARK 500 4 ASN A 109 116.24 68.99 REMARK 500 5 HIS A 5 -179.85 67.57 REMARK 500 5 MET A 6 131.61 73.59 REMARK 500 5 GLU A 9 76.88 -116.96 REMARK 500 5 PHE A 11 49.47 -142.95 REMARK 500 5 PHE A 31 32.49 -94.97 REMARK 500 5 ASP A 33 -55.58 167.38 REMARK 500 5 ASP A 74 8.16 -63.65 REMARK 500 5 HIS A 99 -78.34 176.31 REMARK 500 5 THR A 100 50.35 173.90 REMARK 500 5 ASN A 103 102.53 -178.23 REMARK 500 5 ASP A 110 -168.54 -100.08 REMARK 500 6 PHE A 31 37.25 -85.38 REMARK 500 6 ASN A 38 43.29 -108.73 REMARK 500 6 MET A 78 -77.36 -62.26 REMARK 500 6 HIS A 80 -52.36 78.39 REMARK 500 6 THR A 100 85.81 -67.82 REMARK 500 6 ASP A 106 90.93 -65.98 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-HR8614A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 18698 RELATED DB: BMRB DBREF 2LXU A 7 111 UNP P31943 HNRH1_HUMAN 7 111 SEQADV 2LXU SER A 4 UNP P31943 EXPRESSION TAG SEQADV 2LXU HIS A 5 UNP P31943 EXPRESSION TAG SEQADV 2LXU MET A 6 UNP P31943 EXPRESSION TAG SEQRES 1 A 108 SER HIS MET GLY GLY GLU GLY PHE VAL VAL LYS VAL ARG SEQRES 2 A 108 GLY LEU PRO TRP SER CYS SER ALA ASP GLU VAL GLN ARG SEQRES 3 A 108 PHE PHE SER ASP CYS LYS ILE GLN ASN GLY ALA GLN GLY SEQRES 4 A 108 ILE ARG PHE ILE TYR THR ARG GLU GLY ARG PRO SER GLY SEQRES 5 A 108 GLU ALA PHE VAL GLU LEU GLU SER GLU ASP GLU VAL LYS SEQRES 6 A 108 LEU ALA LEU LYS LYS ASP ARG GLU THR MET GLY HIS ARG SEQRES 7 A 108 TYR VAL GLU VAL PHE LYS SER ASN ASN VAL GLU MET ASP SEQRES 8 A 108 TRP VAL LEU LYS HIS THR GLY PRO ASN SER PRO ASP THR SEQRES 9 A 108 ALA ASN ASP GLY HELIX 1 1 SER A 23 PHE A 31 1 9 HELIX 2 2 ASN A 38 GLN A 41 5 4 HELIX 3 3 SER A 63 LYS A 72 1 10 HELIX 4 4 ASN A 89 HIS A 99 1 11 SHEET 1 A 4 ILE A 43 TYR A 47 0 SHEET 2 A 4 PRO A 53 GLU A 60 -1 O SER A 54 N ILE A 46 SHEET 3 A 4 VAL A 12 ARG A 16 -1 N VAL A 13 O VAL A 59 SHEET 4 A 4 GLU A 84 SER A 88 -1 O GLU A 84 N ARG A 16 SHEET 1 B 2 THR A 77 MET A 78 0 SHEET 2 B 2 ARG A 81 TYR A 82 -1 O ARG A 81 N MET A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000