PDB Short entry for 2LZP HEADER VIRAL PROTEIN 08-OCT-12 2LZP TITLE STRUCTURE OF NS2(2-32) GBVB PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS2 PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HEPATITIS GB VIRUS B; SOURCE 4 ORGANISM_COMMON: GBV-B; SOURCE 5 ORGANISM_TAXID: 39113 KEYWDS NS2, GBVB, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 39 AUTHOR R.MONTSERRET,F.PENIN,A.MARTIN REVDAT 4 14-JUN-23 2LZP 1 REMARK REVDAT 3 18-JUN-14 2LZP 1 JRNL REVDAT 2 07-MAY-14 2LZP 1 JRNL REVDAT 1 09-APR-14 2LZP 0 JRNL AUTH C.BOUKADIDA,C.MARNATA,R.MONTSERRET,L.COHEN,B.BLUMEN, JRNL AUTH 2 J.GOUTTENOIRE,D.MORADPOUR,F.PENIN,A.MARTIN JRNL TITL NS2 PROTEINS OF GB VIRUS B AND HEPATITIS C VIRUS SHARE JRNL TITL 2 COMMON PROTEASE ACTIVITIES AND MEMBRANE TOPOLOGIES. JRNL REF J.VIROL. V. 88 7426 2014 JRNL REFN ISSN 0022-538X JRNL PMID 24741107 JRNL DOI 10.1128/JVI.00656-14 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103026. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM PROTEIN, 50% [U-99% 2H] REMARK 210 TFE, 50% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH, REMARK 210 MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 39 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 29 169.96 61.70 REMARK 500 2 GLU A 3 75.20 53.57 REMARK 500 2 ILE A 5 -87.08 -92.55 REMARK 500 2 LEU A 8 74.84 60.49 REMARK 500 4 ILE A 4 77.51 -110.74 REMARK 500 4 ILE A 5 161.55 65.19 REMARK 500 4 THR A 9 86.17 56.96 REMARK 500 4 LEU A 28 33.52 -98.11 REMARK 500 5 ILE A 5 64.96 -101.12 REMARK 500 5 LEU A 8 60.23 32.28 REMARK 500 6 GLU A 3 73.63 -155.66 REMARK 500 6 ILE A 4 145.99 -171.11 REMARK 500 6 ILE A 5 163.31 63.07 REMARK 500 6 LEU A 8 30.46 -99.52 REMARK 500 6 LEU A 28 -51.69 -146.69 REMARK 500 6 LEU A 29 159.21 64.86 REMARK 500 7 GLU A 3 81.89 56.13 REMARK 500 7 LEU A 29 92.93 59.52 REMARK 500 8 THR A 2 56.14 -96.70 REMARK 500 8 ILE A 5 83.92 59.93 REMARK 500 8 LEU A 8 72.52 -155.21 REMARK 500 9 ILE A 4 88.44 57.49 REMARK 500 9 LEU A 8 32.70 -152.37 REMARK 500 9 LEU A 28 40.35 -154.10 REMARK 500 10 GLU A 3 41.80 -160.56 REMARK 500 10 ILE A 4 -41.25 -164.93 REMARK 500 10 HIS A 27 55.97 -109.11 REMARK 500 10 LEU A 28 -54.89 -124.54 REMARK 500 11 GLU A 3 74.36 -101.33 REMARK 500 11 LEU A 8 51.65 -111.17 REMARK 500 11 THR A 9 77.62 36.03 REMARK 500 11 ALA A 26 36.66 -88.88 REMARK 500 11 HIS A 27 -41.88 -172.63 REMARK 500 12 THR A 2 72.07 53.63 REMARK 500 12 LEU A 29 165.99 62.92 REMARK 500 13 ILE A 5 -89.69 58.51 REMARK 500 13 THR A 9 54.58 -144.65 REMARK 500 13 LEU A 28 -50.41 -148.85 REMARK 500 13 LEU A 29 157.69 64.74 REMARK 500 14 THR A 9 100.42 -168.60 REMARK 500 14 HIS A 27 51.76 -103.35 REMARK 500 14 LEU A 29 87.87 58.12 REMARK 500 15 GLU A 3 74.09 58.14 REMARK 500 15 LEU A 28 43.22 -154.28 REMARK 500 16 GLU A 3 -77.98 -105.81 REMARK 500 16 ILE A 4 -60.09 -133.92 REMARK 500 16 LEU A 29 166.98 64.57 REMARK 500 17 ILE A 5 61.35 -119.21 REMARK 500 17 HIS A 27 54.99 -110.97 REMARK 500 17 LEU A 28 -66.09 -124.16 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.29 SIDE CHAIN REMARK 500 1 ARG A 31 0.29 SIDE CHAIN REMARK 500 2 ARG A 21 0.31 SIDE CHAIN REMARK 500 2 ARG A 31 0.27 SIDE CHAIN REMARK 500 3 ARG A 21 0.26 SIDE CHAIN REMARK 500 3 ARG A 31 0.32 SIDE CHAIN REMARK 500 4 ARG A 21 0.30 SIDE CHAIN REMARK 500 4 ARG A 31 0.32 SIDE CHAIN REMARK 500 5 ARG A 21 0.32 SIDE CHAIN REMARK 500 5 ARG A 31 0.29 SIDE CHAIN REMARK 500 6 ARG A 21 0.32 SIDE CHAIN REMARK 500 6 ARG A 31 0.32 SIDE CHAIN REMARK 500 7 ARG A 21 0.31 SIDE CHAIN REMARK 500 7 ARG A 31 0.32 SIDE CHAIN REMARK 500 8 ARG A 21 0.32 SIDE CHAIN REMARK 500 8 ARG A 31 0.32 SIDE CHAIN REMARK 500 9 ARG A 21 0.32 SIDE CHAIN REMARK 500 9 ARG A 31 0.32 SIDE CHAIN REMARK 500 10 ARG A 21 0.32 SIDE CHAIN REMARK 500 10 ARG A 31 0.30 SIDE CHAIN REMARK 500 11 ARG A 21 0.32 SIDE CHAIN REMARK 500 11 ARG A 31 0.32 SIDE CHAIN REMARK 500 12 ARG A 21 0.32 SIDE CHAIN REMARK 500 12 ARG A 31 0.31 SIDE CHAIN REMARK 500 13 ARG A 21 0.30 SIDE CHAIN REMARK 500 13 ARG A 31 0.32 SIDE CHAIN REMARK 500 14 ARG A 21 0.32 SIDE CHAIN REMARK 500 14 ARG A 31 0.31 SIDE CHAIN REMARK 500 15 ARG A 21 0.32 SIDE CHAIN REMARK 500 15 ARG A 31 0.32 SIDE CHAIN REMARK 500 16 ARG A 21 0.31 SIDE CHAIN REMARK 500 16 ARG A 31 0.32 SIDE CHAIN REMARK 500 17 ARG A 21 0.29 SIDE CHAIN REMARK 500 17 ARG A 31 0.32 SIDE CHAIN REMARK 500 18 ARG A 21 0.31 SIDE CHAIN REMARK 500 18 ARG A 31 0.32 SIDE CHAIN REMARK 500 19 ARG A 21 0.32 SIDE CHAIN REMARK 500 19 ARG A 31 0.32 SIDE CHAIN REMARK 500 20 ARG A 21 0.32 SIDE CHAIN REMARK 500 20 ARG A 31 0.30 SIDE CHAIN REMARK 500 21 ARG A 21 0.30 SIDE CHAIN REMARK 500 21 ARG A 31 0.31 SIDE CHAIN REMARK 500 22 ARG A 21 0.32 SIDE CHAIN REMARK 500 22 ARG A 31 0.32 SIDE CHAIN REMARK 500 23 ARG A 21 0.30 SIDE CHAIN REMARK 500 23 ARG A 31 0.29 SIDE CHAIN REMARK 500 24 ARG A 21 0.29 SIDE CHAIN REMARK 500 24 ARG A 31 0.30 SIDE CHAIN REMARK 500 25 ARG A 21 0.29 SIDE CHAIN REMARK 500 25 ARG A 31 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 78 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18768 RELATED DB: BMRB DBREF 2LZP A 1 31 UNP Q69422 POLG_GBVB 734 764 SEQRES 1 A 31 ASP THR GLU ILE ILE GLY GLY LEU THR ILE PRO PRO VAL SEQRES 2 A 31 VAL ALA LEU VAL VAL MET SER ARG PHE GLY PHE PHE ALA SEQRES 3 A 31 HIS LEU LEU PRO ARG HELIX 1 1 PRO A 11 LEU A 29 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000