PDB Short entry for 2M0T HEADER PROTEIN BINDING 06-NOV-12 2M0T TITLE STRUCTURAL CHARACTERIZATION OF THE EXTENDED PDZ1 DOMAIN FROM NHERF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NA(+)/H(+) EXCHANGE REGULATORY COFACTOR NHE-RF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ1 DOMAIN; COMPND 5 SYNONYM: NHERF-1, EZRIN-RADIXIN-MOESIN-BINDING PHOSPHOPROTEIN 50, COMPND 6 EBP50, REGULATORY COFACTOR OF NA(+)/H(+) EXCHANGER, SODIUM-HYDROGEN COMPND 7 EXCHANGER REGULATORY FACTOR 1, SOLUTE CARRIER FAMILY 9 ISOFORM A3 COMPND 8 REGULATORY FACTOR 1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC9A3R1, NHERF, NHERF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS PDZ DOMAIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BHATTACHARYA,J.H.JU,D.COWBURN,Z.BU REVDAT 5 14-JUN-23 2M0T 1 REMARK SEQADV REVDAT 4 17-JUL-13 2M0T 1 JRNL REVDAT 3 26-JUN-13 2M0T 1 JRNL REVDAT 2 01-MAY-13 2M0T 1 JRNL REVDAT 1 24-APR-13 2M0T 0 JRNL AUTH S.BHATTACHARYA,J.H.JU,N.ORLOVA,J.A.KHAJEH,D.COWBURN,Z.BU JRNL TITL LIGAND-INDUCED DYNAMIC CHANGES IN EXTENDED PDZ DOMAINS FROM JRNL TITL 2 NHERF1. JRNL REF J.MOL.BIOL. V. 425 2509 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23583913 JRNL DOI 10.1016/J.JMB.2013.04.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, ARIA 2.2 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000103065. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 400 UM [U-99% 13C; U-99% 15N] REMARK 210 PDZ1, 20 MM TRIS, 150 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM DTT, 0.5 MM REMARK 210 EDTA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 H(CCO)NH; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 COSY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ; 600 REMARK 210 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, CARA 1.5, CYANA REMARK 210 2.1, TALOS 1.01 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 126.37 -170.38 REMARK 500 1 ALA A 55 95.71 -66.06 REMARK 500 1 ASN A 63 -60.90 68.61 REMARK 500 1 GLU A 108 -40.13 -165.86 REMARK 500 1 ALA A 113 46.08 -74.27 REMARK 500 1 ALA A 116 94.56 62.10 REMARK 500 1 PRO A 117 101.78 -51.67 REMARK 500 2 THR A 9 -43.51 -160.37 REMARK 500 2 LEU A 83 -70.74 -84.63 REMARK 500 2 GLU A 108 -47.29 -171.14 REMARK 500 2 ARG A 112 -81.22 -83.78 REMARK 500 2 ALA A 113 109.88 -174.96 REMARK 500 3 THR A 9 123.58 -172.52 REMARK 500 3 GLU A 108 -24.10 -167.26 REMARK 500 4 THR A 9 128.42 -173.13 REMARK 500 4 MET A 10 -51.51 73.54 REMARK 500 4 LEU A 11 133.53 55.80 REMARK 500 4 ASP A 57 -169.97 -105.76 REMARK 500 4 LEU A 83 -83.85 -63.17 REMARK 500 4 VAL A 104 125.54 68.74 REMARK 500 4 GLU A 108 -26.75 -165.62 REMARK 500 4 ALA A 116 100.22 -162.25 REMARK 500 4 GLN A 119 -42.14 74.26 REMARK 500 5 ASN A 63 -43.65 73.59 REMARK 500 5 LEU A 83 -73.39 -66.55 REMARK 500 5 GLU A 108 -34.98 -175.18 REMARK 500 6 LEU A 35 29.05 -144.00 REMARK 500 6 GLU A 108 -13.86 -178.19 REMARK 500 6 PRO A 117 99.13 -57.56 REMARK 500 6 GLN A 119 -11.38 71.11 REMARK 500 7 ASN A 63 -61.20 70.92 REMARK 500 7 GLU A 70 -165.26 -110.75 REMARK 500 7 LEU A 83 -74.49 -76.95 REMARK 500 7 GLU A 108 -11.72 -169.77 REMARK 500 8 THR A 9 134.72 -171.03 REMARK 500 8 PRO A 44 94.34 -34.67 REMARK 500 8 ALA A 55 99.71 -55.19 REMARK 500 8 GLU A 108 -21.06 -172.66 REMARK 500 8 GLU A 115 -81.63 -80.93 REMARK 500 8 GLN A 119 37.86 -86.30 REMARK 500 9 ALA A 55 92.87 -68.05 REMARK 500 9 VAL A 104 146.85 67.00 REMARK 500 9 GLU A 108 -13.16 179.99 REMARK 500 9 GLN A 119 -72.44 69.39 REMARK 500 10 THR A 9 123.43 -170.63 REMARK 500 10 LYS A 34 -154.35 37.83 REMARK 500 10 ASN A 63 -58.25 68.39 REMARK 500 10 GLN A 105 69.88 -104.32 REMARK 500 10 GLU A 108 -27.18 -174.59 REMARK 500 10 ALA A 116 79.78 59.25 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18824 RELATED DB: BMRB REMARK 900 RELATED ID: 2M0U RELATED DB: PDB REMARK 900 RELATED ID: 2M0V RELATED DB: PDB DBREF 2M0T A 11 120 UNP O14745 NHRF1_HUMAN 11 120 SEQADV 2M0T GLY A 4 UNP O14745 EXPRESSION TAG SEQADV 2M0T ILE A 5 UNP O14745 EXPRESSION TAG SEQADV 2M0T ASP A 6 UNP O14745 EXPRESSION TAG SEQADV 2M0T PRO A 7 UNP O14745 EXPRESSION TAG SEQADV 2M0T PHE A 8 UNP O14745 EXPRESSION TAG SEQADV 2M0T THR A 9 UNP O14745 EXPRESSION TAG SEQADV 2M0T MET A 10 UNP O14745 EXPRESSION TAG SEQRES 1 A 117 GLY ILE ASP PRO PHE THR MET LEU PRO ARG LEU CYS CYS SEQRES 2 A 117 LEU GLU LYS GLY PRO ASN GLY TYR GLY PHE HIS LEU HIS SEQRES 3 A 117 GLY GLU LYS GLY LYS LEU GLY GLN TYR ILE ARG LEU VAL SEQRES 4 A 117 GLU PRO GLY SER PRO ALA GLU LYS ALA GLY LEU LEU ALA SEQRES 5 A 117 GLY ASP ARG LEU VAL GLU VAL ASN GLY GLU ASN VAL GLU SEQRES 6 A 117 LYS GLU THR HIS GLN GLN VAL VAL SER ARG ILE ARG ALA SEQRES 7 A 117 ALA LEU ASN ALA VAL ARG LEU LEU VAL VAL ASP PRO GLU SEQRES 8 A 117 THR ASP GLU GLN LEU GLN LYS LEU GLY VAL GLN VAL ARG SEQRES 9 A 117 GLU GLU LEU LEU ARG ALA GLN GLU ALA PRO GLY GLN ALA HELIX 1 1 SER A 46 GLY A 52 1 7 HELIX 2 2 THR A 71 ARG A 80 1 10 HELIX 3 3 ASP A 92 LYS A 101 1 10 HELIX 4 4 GLU A 108 ALA A 113 1 6 SHEET 1 A 5 ARG A 13 GLU A 18 0 SHEET 2 A 5 ALA A 85 VAL A 91 -1 O LEU A 88 N CYS A 15 SHEET 3 A 5 ARG A 58 VAL A 62 -1 N VAL A 60 O LEU A 89 SHEET 4 A 5 GLN A 37 VAL A 42 -1 N GLN A 37 O LEU A 59 SHEET 5 A 5 PHE A 26 GLY A 30 -1 N HIS A 27 O ARG A 40 SHEET 1 B 4 ARG A 13 GLU A 18 0 SHEET 2 B 4 ALA A 85 VAL A 91 -1 O LEU A 88 N CYS A 15 SHEET 3 B 4 ARG A 58 VAL A 62 -1 N VAL A 60 O LEU A 89 SHEET 4 B 4 GLU A 65 ASN A 66 -1 O GLU A 65 N VAL A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000