PDB Short entry for 2M0X HEADER DE NOVO PROTEIN 08-NOV-12 2M0X TITLE SOLUTION STRUCTURE OF U14UB1, AN ENGINEERED UBIQUITIN VARIANT WITH TITLE 2 INCREASED AFFINITY FOR USP14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGINEERED UBIQUITIN VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.H.PHILLIPS,W.J.FAIRBROTHER,J.E.CORN REVDAT 5 14-JUN-23 2M0X 1 REMARK REVDAT 4 27-APR-16 2M0X 1 REMARK SEQRES ATOM REVDAT 3 24-JUL-13 2M0X 1 JRNL REVDAT 2 10-JUL-13 2M0X 1 JRNL REVDAT 1 26-JUN-13 2M0X 0 JRNL AUTH A.H.PHILLIPS,Y.ZHANG,C.N.CUNNINGHAM,L.ZHOU,W.F.FORREST, JRNL AUTH 2 P.S.LIU,M.STEFFEK,J.LEE,C.TAM,E.HELGASON,J.M.MURRAY, JRNL AUTH 3 D.S.KIRKPATRICK,W.J.FAIRBROTHER,J.E.CORN JRNL TITL CONFORMATIONAL DYNAMICS CONTROL UBIQUITIN-DEUBIQUITINASE JRNL TITL 2 INTERACTIONS AND INFLUENCE IN VIVO SIGNALING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 11379 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23801757 JRNL DOI 10.1073/PNAS.1302407110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M0X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000103069. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.16 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 25 MM SODIUM PHOSPHATE, REMARK 210 125 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-99% 13C; U-99% REMARK 210 15N] PROTEIN, 25 MM SODIUM REMARK 210 PHOSPHATE, 125 MM SODIUM REMARK 210 CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D 1H-15N NOESY; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 19 -38.18 -39.28 REMARK 500 1 GLN A 62 -162.32 -101.24 REMARK 500 2 GLN A 41 148.46 -38.98 REMARK 500 2 ALA A 46 26.83 47.65 REMARK 500 2 GLN A 62 -151.85 -112.59 REMARK 500 3 GLN A 31 -10.81 -49.84 REMARK 500 3 ALA A 46 19.11 51.47 REMARK 500 3 GLN A 62 -154.03 -112.21 REMARK 500 4 THR A 9 -9.46 -150.16 REMARK 500 4 ASP A 21 107.65 -53.63 REMARK 500 4 GLN A 31 -6.33 -51.87 REMARK 500 4 GLN A 41 95.68 -31.08 REMARK 500 4 ALA A 46 18.30 50.00 REMARK 500 4 GLN A 62 -155.73 -110.35 REMARK 500 4 GLU A 64 19.23 47.59 REMARK 500 5 GLN A 40 -67.89 -107.09 REMARK 500 5 GLN A 41 146.19 -32.19 REMARK 500 5 ALA A 46 9.63 58.48 REMARK 500 5 GLN A 62 -167.22 -110.50 REMARK 500 5 ARG A 72 121.45 -172.49 REMARK 500 6 PRO A 37 156.91 -41.47 REMARK 500 6 ASP A 52 153.71 -47.39 REMARK 500 6 GLN A 62 -161.20 -112.57 REMARK 500 7 GLN A 31 -7.14 -52.92 REMARK 500 7 GLN A 62 -152.15 -118.55 REMARK 500 7 GLU A 64 26.86 47.73 REMARK 500 7 ARG A 72 108.43 -160.83 REMARK 500 8 PRO A 37 155.99 -42.77 REMARK 500 8 ALA A 46 17.19 50.72 REMARK 500 8 GLN A 62 -158.59 -122.66 REMARK 500 9 GLN A 31 -11.18 -49.45 REMARK 500 9 PRO A 37 156.25 -39.43 REMARK 500 9 GLN A 62 -154.17 -116.35 REMARK 500 10 THR A 9 -21.73 -148.87 REMARK 500 10 GLN A 31 -6.23 -55.56 REMARK 500 10 GLN A 62 -153.30 -118.42 REMARK 500 10 GLU A 64 19.45 48.89 REMARK 500 10 ARG A 72 114.46 -171.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18831 RELATED DB: BMRB DBREF 2M0X A -1 76 PDB 2M0X 2M0X -1 76 SEQRES 1 A 78 GLY SER MET GLN ILE PHE VAL LYS GLY LEU THR GLY LYS SEQRES 2 A 78 THR THR THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 A 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS THR GLY LEU PRO SEQRES 4 A 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 A 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 A 78 GLU SER THR LEU HIS ILE VAL TRP ARG LEU ARG GLY GLY HELIX 1 1 THR A 22 THR A 34 1 13 HELIX 2 2 PRO A 37 GLN A 41 5 5 HELIX 3 3 THR A 55 ASN A 60 1 6 SHEET 1 A 3 THR A 12 GLU A 16 0 SHEET 2 A 3 GLN A 2 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 A 3 LEU A 67 HIS A 68 1 O LEU A 67 N PHE A 4 SHEET 1 B 2 ILE A 44 PHE A 45 0 SHEET 2 B 2 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000