PDB Short entry for 2M3L HEADER ONCOPROTEIN 21-JAN-13 2M3L TITLE SOLUTION STRUCTURE OF THE C-TERMINAL ZINC-BINDING DOMAIN OF HPV51 TITLE 2 ONCOPROTEIN E6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN E6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E6, UNP RESIDUES 80-151; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 51; SOURCE 3 ORGANISM_TAXID: 10595; SOURCE 4 STRAIN: TYPE 51; SOURCE 5 GENE: E6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS PAPILLOMAVIRUS E6 PROTEINS, HPV, ONCOPROTEIN E6, ZINC FINGERS, E6, KEYWDS 2 VIRAL, ONCOGENE PROTEINS, ONCOPROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.MISCHO,O.OHLENSCHLAGER,M.GORLACH REVDAT 2 01-MAY-24 2M3L 1 REMARK SEQADV LINK REVDAT 1 15-MAY-13 2M3L 0 JRNL AUTH A.MISCHO,O.OHLENSCHLAGER,P.HORTSCHANSKY,R.RAMACHANDRAN, JRNL AUTH 2 M.GORLACH JRNL TITL STRUCTURAL INSIGHTS INTO A WILDTYPE DOMAIN OF THE JRNL TITL 2 ONCOPROTEIN E6 AND ITS INTERACTION WITH A PDZ DOMAIN. JRNL REF PLOS ONE V. 8 62584 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23638119 JRNL DOI 10.1371/JOURNAL.PONE.0062584 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3, CNS, CYANA 3 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000103165. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 180 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13 MM [U-100% 13C; U-100% 15N] REMARK 210 E6, 90 MM SODIUM CHLORIDE, 45 MM REMARK 210 L-ARGININE, 45 MM L-GLUTAMATE, 9 REMARK 210 MM DTT, 0.05 W/V SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.9 MM [U-100% REMARK 210 13C; U-100% 15N] E6, 90 MM REMARK 210 SODIUM CHLORIDE, 45 MM L- REMARK 210 ARGININE, 45 MM L-GLUTAMATE, 9 REMARK 210 MM DTT, 0.05 W/V SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D HNHA; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C HSQC REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-COSY; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, TOPSPIN REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 80 105.92 -58.98 REMARK 500 1 GLN A 150 -46.00 -140.94 REMARK 500 4 HIS A 78 -50.30 -142.06 REMARK 500 4 LYS A 122 60.98 65.71 REMARK 500 4 THR A 149 30.21 -140.47 REMARK 500 5 LYS A 122 62.26 66.27 REMARK 500 5 ARG A 144 30.35 -95.88 REMARK 500 7 THR A 149 34.52 -79.57 REMARK 500 8 LYS A 93 16.39 55.85 REMARK 500 8 THR A 143 34.07 -82.91 REMARK 500 8 GLU A 148 65.77 -69.41 REMARK 500 9 LYS A 122 60.29 64.24 REMARK 500 10 SER A 80 106.78 -59.56 REMARK 500 12 LYS A 122 60.43 60.63 REMARK 500 14 LYS A 122 61.41 63.05 REMARK 500 15 HIS A 104 31.66 -80.42 REMARK 500 15 LYS A 122 60.94 64.05 REMARK 500 15 GLN A 150 21.30 -140.07 REMARK 500 16 GLU A 148 88.05 -69.64 REMARK 500 18 SER A 77 41.13 -82.90 REMARK 500 18 GLN A 150 -51.43 -125.32 REMARK 500 19 MET A 79 -46.16 -140.40 REMARK 500 19 GLU A 148 86.11 -68.04 REMARK 500 20 SER A 77 33.61 -81.61 REMARK 500 20 LYS A 93 15.60 55.33 REMARK 500 20 THR A 143 37.54 -84.58 REMARK 500 20 GLU A 148 30.09 -71.31 REMARK 500 20 THR A 149 -4.49 -140.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 CYS A 106 SG 102.5 REMARK 620 3 CYS A 136 SG 100.7 114.9 REMARK 620 4 CYS A 139 SG 107.8 115.3 113.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18967 RELATED DB: BMRB DBREF 2M3L A 80 151 UNP P26554 VE6_HPV51 80 151 SEQADV 2M3L GLY A 76 UNP P26554 EXPRESSION TAG SEQADV 2M3L SER A 77 UNP P26554 EXPRESSION TAG SEQADV 2M3L HIS A 78 UNP P26554 EXPRESSION TAG SEQADV 2M3L MET A 79 UNP P26554 EXPRESSION TAG SEQRES 1 A 76 GLY SER HIS MET SER ARG SER VAL TYR GLY THR THR LEU SEQRES 2 A 76 GLU ALA ILE THR LYS LYS SER LEU TYR ASP LEU SER ILE SEQRES 3 A 76 ARG CYS HIS ARG CYS GLN ARG PRO LEU GLY PRO GLU GLU SEQRES 4 A 76 LYS GLN LYS LEU VAL ASP GLU LYS LYS ARG PHE HIS GLU SEQRES 5 A 76 ILE ALA GLY ARG TRP THR GLY GLN CYS ALA ASN CYS TRP SEQRES 6 A 76 GLN ARG THR ARG GLN ARG ASN GLU THR GLN VAL HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 TYR A 84 THR A 92 1 9 HELIX 2 2 GLY A 111 GLU A 121 1 11 HELIX 3 3 CYS A 136 ARG A 144 1 9 SHEET 1 A 4 ARG A 81 VAL A 83 0 SHEET 2 A 4 PHE A 125 ILE A 128 -1 O PHE A 125 N VAL A 83 SHEET 3 A 4 ARG A 131 GLY A 134 -1 O THR A 133 N HIS A 126 SHEET 4 A 4 ARG A 102 CYS A 103 1 N ARG A 102 O GLY A 134 LINK SG CYS A 103 ZN ZN A 201 1555 1555 2.45 LINK SG CYS A 106 ZN ZN A 201 1555 1555 2.25 LINK SG CYS A 136 ZN ZN A 201 1555 1555 2.22 LINK SG CYS A 139 ZN ZN A 201 1555 1555 2.23 SITE 1 AC1 4 CYS A 103 CYS A 106 CYS A 136 CYS A 139 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000