PDB Short entry for 2M67 HEADER TRANSPORT PROTEIN 27-MAR-13 2M67 TITLE FULL-LENGTH MERCURY TRANSPORTER PROTEIN MERF IN LIPID BILAYER TITLE 2 MEMBRANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MERF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MORGANELLA MORGANII; SOURCE 3 ORGANISM_TAXID: 582; SOURCE 4 GENE: MERF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET31B+ KEYWDS INTEGRAL MEMBRANE PROTEIN, MERCURY TRANSPORTER, LIPID BILAYER, KEYWDS 2 TRANSPORT PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR G.J.LU,Y.TIAN,N.VORA,F.M.MARASSI,S.J.OPELLA REVDAT 3 14-JUN-23 2M67 1 REMARK SEQADV REVDAT 2 10-JUL-13 2M67 1 JRNL REVDAT 1 03-JUL-13 2M67 0 JRNL AUTH G.J.LU,Y.TIAN,N.VORA,F.M.MARASSI,S.J.OPELLA JRNL TITL THE STRUCTURE OF THE MERCURY TRANSPORTER MERF IN JRNL TITL 2 PHOSPHOLIPID BILAYERS: A LARGE CONFORMATIONAL REARRANGEMENT JRNL TITL 3 RESULTS FROM N-TERMINAL TRUNCATION. JRNL REF J.AM.CHEM.SOC. V. 135 9299 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23763519 JRNL DOI 10.1021/JA4042115 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, C.D. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103259. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.0-3.0 MM [U-99% 13C; U-99% REMARK 210 15N] PROTEIN, 10.0-15.0 MM 1,2-DI-O-TETRADECYL-SN-GLYCERO-3- REMARK 210 PHOSPHOCHOLINE, 20 MM MES, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DARR; 2D NC CORRELATION; 3D REMARK 210 HNNCA SLF; 3D HNNCO SLF; 3D REMARK 210 HCCXCX SLF REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DD2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 25 H ILE A 29 1.54 REMARK 500 O THR A 73 H LYS A 75 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -153.45 -59.31 REMARK 500 1 PRO A 4 -8.40 -44.86 REMARK 500 1 SER A 22 -2.58 -50.59 REMARK 500 1 LEU A 43 -32.46 -31.67 REMARK 500 1 TYR A 45 53.05 -92.73 REMARK 500 1 SER A 72 -79.93 -96.39 REMARK 500 1 THR A 73 101.83 -39.27 REMARK 500 1 PRO A 74 31.13 -60.55 REMARK 500 2 LYS A 2 50.06 -145.71 REMARK 500 2 LEU A 39 -73.39 -62.50 REMARK 500 2 TYR A 45 46.80 -107.35 REMARK 500 2 LYS A 80 -106.48 -77.13 REMARK 500 3 LYS A 2 -63.89 -148.15 REMARK 500 3 PRO A 4 -3.17 -51.78 REMARK 500 3 LYS A 5 -26.31 -37.86 REMARK 500 3 LEU A 8 -76.88 -60.90 REMARK 500 3 ARG A 9 -19.18 -45.42 REMARK 500 3 PRO A 25 -13.56 -40.46 REMARK 500 3 TYR A 45 40.27 -99.49 REMARK 500 3 PRO A 74 41.11 -77.33 REMARK 500 4 PRO A 4 10.67 -61.55 REMARK 500 4 SER A 22 -0.84 -50.49 REMARK 500 4 TYR A 42 35.29 -166.92 REMARK 500 4 LEU A 43 31.84 -64.48 REMARK 500 4 TYR A 45 48.71 -99.56 REMARK 500 4 SER A 72 -76.19 -70.40 REMARK 500 5 LYS A 2 105.64 -56.91 REMARK 500 5 SER A 22 -5.17 -49.98 REMARK 500 5 VAL A 33 -35.54 -39.86 REMARK 500 5 TYR A 42 104.16 -57.04 REMARK 500 5 LEU A 43 30.37 -92.35 REMARK 500 5 VAL A 46 -24.30 -142.36 REMARK 500 5 LYS A 80 85.35 -55.10 REMARK 500 6 THR A 6 -51.48 -135.72 REMARK 500 6 SER A 22 -3.06 -51.25 REMARK 500 6 TYR A 42 54.65 -119.51 REMARK 500 6 VAL A 46 -16.07 -140.24 REMARK 500 7 SER A 22 -3.40 -51.38 REMARK 500 7 PRO A 25 -11.68 -45.80 REMARK 500 7 LEU A 43 24.25 -64.97 REMARK 500 7 TYR A 45 45.58 -95.23 REMARK 500 7 PRO A 74 -70.69 -69.94 REMARK 500 7 PHE A 76 -71.38 -38.70 REMARK 500 8 THR A 6 -57.50 -138.86 REMARK 500 8 SER A 37 -18.18 -41.78 REMARK 500 8 PRO A 74 45.05 -58.47 REMARK 500 9 ASP A 3 160.86 -45.97 REMARK 500 9 THR A 6 -55.23 -135.80 REMARK 500 9 TYR A 42 -143.31 -106.50 REMARK 500 9 TYR A 45 44.08 -101.14 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H3O RELATED DB: PDB REMARK 900 TRUNCATED CORE DOMAIN OF THE SAME PROTEIN IN MAGNETICALLY ALIGNED REMARK 900 BICELLE REMARK 900 RELATED ID: 1WAZ RELATED DB: PDB REMARK 900 TRUNCATED CORE DOMAIN OF THE SAME PROTEIN IN DETERGENT MICELLE REMARK 900 RELATED ID: 2LJ2 RELATED DB: PDB REMARK 900 TRUNCATED CORE DOMAIN OF THE SAME PROTEIN IN PROTEOLIPOSOME REMARK 900 RELATED ID: 19115 RELATED DB: BMRB DBREF 2M67 A 1 81 UNP Q56446 Q56446_MORMO 1 81 SEQADV 2M67 SER A 21 UNP Q56446 CYS 21 CONFLICT SEQADV 2M67 SER A 22 UNP Q56446 CYS 22 CONFLICT SEQADV 2M67 SER A 71 UNP Q56446 CYS 71 CONFLICT SEQADV 2M67 SER A 72 UNP Q56446 CYS 72 CONFLICT SEQRES 1 A 81 MET LYS ASP PRO LYS THR LEU LEU ARG VAL SER ILE ILE SEQRES 2 A 81 GLY THR THR LEU VAL ALA LEU SER SER PHE THR PRO VAL SEQRES 3 A 81 LEU VAL ILE LEU LEU GLY VAL VAL GLY LEU SER ALA LEU SEQRES 4 A 81 THR GLY TYR LEU ASP TYR VAL LEU LEU PRO ALA LEU ALA SEQRES 5 A 81 ILE PHE ILE GLY LEU THR ILE TYR ALA ILE GLN ARG LYS SEQRES 6 A 81 ARG GLN ALA ASP ALA SER SER THR PRO LYS PHE ASN GLY SEQRES 7 A 81 VAL LYS LYS HELIX 1 1 ASP A 3 LEU A 8 1 6 HELIX 2 2 ARG A 9 SER A 22 1 14 HELIX 3 3 THR A 24 GLY A 41 1 18 HELIX 4 4 TYR A 42 VAL A 46 5 5 HELIX 5 5 ALA A 50 SER A 72 1 23 HELIX 6 6 PRO A 74 LYS A 81 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000