PDB Short entry for 2M72 HEADER UNKNOWN FUNCTION 16-APR-13 2M72 TITLE SOLUTION STRUCTURE OF UNCHARACTERIZED THIOREDOXIN-LIKE PROTEIN PG_2175 TITLE 2 FROM PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED THIOREDOXIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 GENE: PG_2175; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, THIOREDOXIN-LIKE, NEW YORK KEYWDS 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, PSI-BIOLOGY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,M.AHMED,J.ATTONITO,J.B.BONANNO,S.CHAMALA,S.CHOWDHURY, AUTHOR 2 B.EVANS,A.FISER,A.S.GLENN,J.HAMMONDS,B.HILLERICH,K.KHAFIZOV, AUTHOR 3 J.LAFLEUR,J.D.LOVE,R.D.SEIDEL,M.STEAD,M.E.GIRVIN,S.C.ALMO,NEW YORK AUTHOR 4 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 14-JUN-23 2M72 1 REMARK SEQADV REVDAT 1 15-MAY-13 2M72 0 JRNL AUTH R.HARRIS,M.AHMED,J.ATTONITO,J.B.BONANNO,S.CHAMALA, JRNL AUTH 2 S.CHOWDHURY,B.EVANS,A.FISER,A.S.GLENN,J.HAMMONDS, JRNL AUTH 3 B.HILLERICH,K.KHAFIZOV,J.LAFLEUR,J.D.LOVE,R.D.SEIDEL, JRNL AUTH 4 M.STEAD,M.E.GIRVIN,S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF UNCHARACTERIZED THIOREDOXIN-LIKE JRNL TITL 2 PROTEIN PG_2175 FROM PORPHYROMONAS GINGIVALIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21, X-PLOR NIH 2.32, CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), BRUNGER,ADAMS,CLORE,DELANO,GROS, REMARK 3 GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER USING REMARK 3 XPLOR-NIH REMARK 4 REMARK 4 2M72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103290. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10MM NA ACETATE BUFFER PH 4.5, REMARK 210 3MM DTT, 0.1MM EDTA; 10MM NA REMARK 210 ACETATE BUFFER PH 4.5, 3MM DTT, REMARK 210 0.1MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C REMARK 210 HSQC; AROMATIC 13C HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, X-PLOR NIH 2.32, REMARK 210 CCPN_ANALYSIS 2.2, MDDNMR 2.2, REMARK 210 MDDGUI, NMRPIPE 7.5, SIDER, REMARK 210 VNMRJ 2.2D, TOPSPIN 2.1, REMARK 210 MOLPROBITY REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 3DS WERE COLLECTED AS NUS (30%) USING THE MDDNMR REMARK 210 APPROACH REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 5 72.83 -155.26 REMARK 500 1 TYR A 6 -143.22 -92.10 REMARK 500 1 ALA A 7 14.72 -140.55 REMARK 500 1 ALA A 11 80.55 -69.64 REMARK 500 1 ASN A 29 -75.97 -82.16 REMARK 500 1 ALA A 30 29.03 -177.12 REMARK 500 1 ASN A 42 82.16 -161.88 REMARK 500 1 LYS A 44 -61.27 -127.65 REMARK 500 1 GLU A 63 -86.20 -86.78 REMARK 500 1 ILE A 73 36.48 -84.68 REMARK 500 1 ASN A 108 93.08 68.84 REMARK 500 1 THR A 132 87.74 57.01 REMARK 500 1 GLU A 133 127.71 72.07 REMARK 500 2 THR A 5 61.65 -100.96 REMARK 500 2 TYR A 6 -134.02 -98.96 REMARK 500 2 ALA A 11 91.22 -68.91 REMARK 500 2 ALA A 30 -38.85 176.27 REMARK 500 2 GLU A 92 47.88 -100.35 REMARK 500 2 ASN A 100 -30.89 -142.94 REMARK 500 2 ASN A 108 81.75 72.13 REMARK 500 2 HIS A 153 -67.05 73.04 REMARK 500 3 TYR A 6 -80.58 -103.48 REMARK 500 3 ALA A 7 -10.77 166.98 REMARK 500 3 GLU A 28 97.98 33.06 REMARK 500 3 ALA A 30 19.94 -174.69 REMARK 500 3 LEU A 47 40.82 -85.51 REMARK 500 3 GLU A 63 -70.11 -103.52 REMARK 500 3 GLU A 92 42.28 -89.00 REMARK 500 3 ASN A 108 78.91 68.22 REMARK 500 3 THR A 132 -59.94 77.41 REMARK 500 4 THR A 5 76.12 65.54 REMARK 500 4 TYR A 6 -101.38 -100.87 REMARK 500 4 ALA A 7 11.50 -177.41 REMARK 500 4 GLU A 28 175.66 64.52 REMARK 500 4 ASN A 29 -78.27 -139.25 REMARK 500 4 ALA A 30 31.13 -176.77 REMARK 500 4 ARG A 48 -80.89 61.15 REMARK 500 4 GLU A 63 -44.19 -131.95 REMARK 500 4 GLU A 92 30.83 -94.65 REMARK 500 4 THR A 132 -88.33 69.37 REMARK 500 4 HIS A 155 143.96 72.61 REMARK 500 5 TYR A 6 -136.57 -92.68 REMARK 500 5 ALA A 7 19.27 -144.54 REMARK 500 5 ASN A 29 -75.66 -76.05 REMARK 500 5 ALA A 30 33.48 -174.55 REMARK 500 5 THR A 132 81.50 55.47 REMARK 500 5 GLU A 133 120.85 64.72 REMARK 500 5 HIS A 153 86.68 59.53 REMARK 500 5 HIS A 154 174.13 69.28 REMARK 500 6 TYR A 6 -120.08 -116.16 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011441 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 19169 RELATED DB: BMRB DBREF 2M72 A 4 148 UNP Q7MT23 Q7MT23_PORGI 16 160 SEQADV 2M72 MET A 1 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 SER A 2 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 LEU A 3 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 GLU A 149 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 GLY A 150 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 HIS A 151 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 HIS A 152 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 HIS A 153 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 HIS A 154 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 HIS A 155 UNP Q7MT23 EXPRESSION TAG SEQADV 2M72 HIS A 156 UNP Q7MT23 EXPRESSION TAG SEQRES 1 A 156 MET SER LEU ASN THR TYR ALA GLN LEU PRO ALA VAL SER SEQRES 2 A 156 LEU LYS ASN ILE GLU GLY LYS THR VAL GLN THR ASN LYS SEQRES 3 A 156 LEU GLU ASN ALA GLY LYS PRO MET ILE ILE SER PHE PHE SEQRES 4 A 156 ALA THR ASN CYS LYS PRO CYS LEU ARG GLU LEU LYS ALA SEQRES 5 A 156 ILE GLN GLU VAL TYR ALA ASP TRP GLN ASP GLU THR GLY SEQRES 6 A 156 VAL ARG LEU ILE ALA VAL SER ILE ASP GLU GLY GLN ASN SEQRES 7 A 156 ALA GLN LYS VAL LYS PRO LEU ALA ASP GLY ASN GLY TRP SEQRES 8 A 156 GLU TYR GLU VAL LEU LEU ASP SER ASN GLY ASP PHE LYS SEQRES 9 A 156 ARG ALA MET ASN VAL SER LEU ILE PRO ALA VAL PHE ILE SEQRES 10 A 156 VAL ASP GLY ASN GLY LYS ILE VAL TYR ASN HIS THR GLY SEQRES 11 A 156 TYR THR GLU GLY GLY GLU ALA GLU LEU ILE LYS LYS VAL SEQRES 12 A 156 ARG GLU LEU VAL LYS GLU GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 25 LEU A 27 5 3 HELIX 2 2 LEU A 47 VAL A 56 1 10 HELIX 3 3 VAL A 56 THR A 64 1 9 HELIX 4 4 ASN A 78 GLN A 80 5 3 HELIX 5 5 LYS A 81 GLY A 90 1 10 HELIX 6 6 ASP A 102 ASN A 108 1 7 HELIX 7 7 GLY A 135 GLY A 150 1 16 SHEET 1 A 7 THR A 21 GLN A 23 0 SHEET 2 A 7 SER A 13 ASN A 16 -1 N LEU A 14 O VAL A 22 SHEET 3 A 7 GLU A 94 LEU A 97 -1 O LEU A 97 N LYS A 15 SHEET 4 A 7 ARG A 67 SER A 72 1 N ALA A 70 O LEU A 96 SHEET 5 A 7 MET A 34 PHE A 39 1 N ILE A 35 O ILE A 69 SHEET 6 A 7 ALA A 114 VAL A 118 -1 O VAL A 118 N MET A 34 SHEET 7 A 7 ILE A 124 THR A 129 -1 O TYR A 126 N ILE A 117 CISPEP 1 ILE A 112 PRO A 113 1 0.96 CISPEP 2 ILE A 112 PRO A 113 2 0.30 CISPEP 3 ILE A 112 PRO A 113 3 0.58 CISPEP 4 ILE A 112 PRO A 113 4 0.45 CISPEP 5 ILE A 112 PRO A 113 5 -0.13 CISPEP 6 ILE A 112 PRO A 113 6 1.82 CISPEP 7 ILE A 112 PRO A 113 7 -1.71 CISPEP 8 ILE A 112 PRO A 113 8 0.72 CISPEP 9 ILE A 112 PRO A 113 9 0.91 CISPEP 10 ILE A 112 PRO A 113 10 0.56 CISPEP 11 ILE A 112 PRO A 113 11 1.81 CISPEP 12 ILE A 112 PRO A 113 12 1.56 CISPEP 13 ILE A 112 PRO A 113 13 -0.34 CISPEP 14 ILE A 112 PRO A 113 14 -0.04 CISPEP 15 ILE A 112 PRO A 113 15 1.19 CISPEP 16 ILE A 112 PRO A 113 16 0.86 CISPEP 17 ILE A 112 PRO A 113 17 -0.38 CISPEP 18 ILE A 112 PRO A 113 18 -0.05 CISPEP 19 ILE A 112 PRO A 113 19 0.38 CISPEP 20 ILE A 112 PRO A 113 20 -1.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000