PDB Short entry for 2M7I HEADER ANTIBIOTIC 24-APR-13 2M7I TITLE SOLUTION STRUCTURE OF A BETA-HAIRPIN PEPTIDOMIMETIC ANTIBIOTIC THAT TITLE 2 TARGETS LPTD IN PSEUDOMONAS SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-HAIRPIN PEPTIDOMIMETIC ANTIBIOTIC TWL(DAB)(ORN)(DLY) COMPND 3 RW(ORN)(DAB)AK(DPR)P; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS PEPTIDOMIMETICS, BETA-HAIRPIN, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.MOEHLE,J.SCHMIDT,J.ROBINSON REVDAT 2 14-JUN-23 2M7I 1 REMARK LINK REVDAT 1 11-SEP-13 2M7I 0 JRNL AUTH J.SCHMIDT,K.PATORA-KOMISARSKA,K.MOEHLE,D.OBRECHT, JRNL AUTH 2 J.A.ROBINSON JRNL TITL STRUCTURAL STUDIES OF BETA-HAIRPIN PEPTIDOMIMETIC JRNL TITL 2 ANTIBIOTICS THAT TARGET LPTD IN PSEUDOMONAS SP. JRNL REF BIOORG.MED.CHEM. V. 21 5806 2013 JRNL REFN ISSN 0968-0896 JRNL PMID 23932450 JRNL DOI 10.1016/J.BMC.2013.07.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.0, DYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, BRAUN AND REMARK 3 WUTHRICH (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103306. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 2.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM PROTEIN, 90 % H2O, 10 % REMARK 210 D2O, 90% H2O/10% D2O; 5 MM REMARK 210 PROTEIN, 100 % D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DQF-COSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-13C HSQC; 2D REMARK 210 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.53, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE BETA-HAIRPIN PEPTIDOMIMETIC ANTIBIOTIC TWL(DAB)(ORN)(DLY)RW REMARK 400 (ORN)(DAB)AK(DPR)P IS CYCLIC PEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: BETA-HAIRPIN PEPTIDOMIMETIC ANTIBIOTIC TWL(DAB)(ORN)(DLY)RW REMARK 400 (ORN)(DAB)AK(DPR)P REMARK 400 CHAIN: A REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ORN A 9 131.74 176.59 REMARK 500 1 LYS A 12 92.95 -161.94 REMARK 500 2 ORN A 9 125.79 -172.89 REMARK 500 2 LYS A 12 90.65 -163.54 REMARK 500 3 ORN A 5 84.57 -164.23 REMARK 500 3 ORN A 9 125.39 176.44 REMARK 500 3 LYS A 12 95.57 -162.06 REMARK 500 4 ORN A 9 127.58 176.14 REMARK 500 4 LYS A 12 87.46 -161.60 REMARK 500 5 ORN A 9 121.97 -171.27 REMARK 500 5 LYS A 12 93.34 -162.83 REMARK 500 6 ORN A 5 84.43 -167.90 REMARK 500 6 ORN A 9 120.53 173.02 REMARK 500 6 LYS A 12 95.68 -161.17 REMARK 500 7 ORN A 9 134.58 -177.10 REMARK 500 7 LYS A 12 98.31 -162.15 REMARK 500 8 ORN A 9 134.24 176.56 REMARK 500 8 LYS A 12 98.57 -161.87 REMARK 500 9 ORN A 5 84.58 -162.96 REMARK 500 9 ORN A 9 120.44 178.50 REMARK 500 9 LYS A 12 93.15 -161.71 REMARK 500 10 ORN A 5 99.68 -170.98 REMARK 500 10 ORN A 9 -75.61 -142.22 REMARK 500 10 DAB A 10 160.67 61.59 REMARK 500 10 LYS A 12 100.28 -163.10 REMARK 500 11 ORN A 9 134.37 175.79 REMARK 500 11 LYS A 12 94.75 -163.16 REMARK 500 12 LEU A 3 -177.62 -67.14 REMARK 500 12 ORN A 5 84.70 -165.28 REMARK 500 12 ORN A 9 118.64 177.20 REMARK 500 13 LEU A 3 67.75 -117.94 REMARK 500 13 ORN A 5 113.54 -163.02 REMARK 500 13 ORN A 9 -70.41 -144.63 REMARK 500 13 DAB A 10 163.05 60.55 REMARK 500 13 LYS A 12 96.05 -164.23 REMARK 500 14 LEU A 3 70.46 -111.38 REMARK 500 14 ORN A 5 113.92 -165.03 REMARK 500 14 ORN A 9 -69.96 -144.21 REMARK 500 14 DAB A 10 162.44 60.46 REMARK 500 14 LYS A 12 101.11 -161.77 REMARK 500 14 DPR A 13 -105.21 59.72 REMARK 500 15 ORN A 9 106.15 -164.85 REMARK 500 16 ORN A 9 115.07 172.36 REMARK 500 16 LYS A 12 89.25 -159.52 REMARK 500 17 ORN A 5 93.48 -162.58 REMARK 500 17 ORN A 9 -63.79 -142.51 REMARK 500 17 DAB A 10 159.68 61.51 REMARK 500 17 LYS A 12 101.88 -162.15 REMARK 500 17 DPR A 13 -104.09 58.25 REMARK 500 18 ORN A 9 -64.32 -144.34 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19190 RELATED DB: BMRB REMARK 900 RELATED ID: 2M7J RELATED DB: PDB DBREF 2M7I A 1 14 PDB 2M7I 2M7I 1 14 SEQRES 1 A 14 THR TRP LEU DAB ORN DLY ARG TRP ORN DAB ALA LYS DPR SEQRES 2 A 14 PRO MODRES 2M7I DAB A 4 ALA 2,4-DIAMINOBUTYRIC ACID MODRES 2M7I ORN A 5 ALA L-ORNITHINE MODRES 2M7I ORN A 9 ALA L-ORNITHINE MODRES 2M7I DAB A 10 ALA 2,4-DIAMINOBUTYRIC ACID HET DAB A 4 16 HET ORN A 5 19 HET DLY A 6 22 HET ORN A 9 19 HET DAB A 10 16 HET DPR A 13 14 HETNAM DAB 2,4-DIAMINOBUTYRIC ACID HETNAM ORN L-ORNITHINE HETNAM DLY D-LYSINE HETNAM DPR D-PROLINE FORMUL 1 DAB 2(C4 H10 N2 O2) FORMUL 1 ORN 2(C5 H12 N2 O2) FORMUL 1 DLY C6 H14 N2 O2 FORMUL 1 DPR C5 H9 N O2 SHEET 1 A 2 TRP A 2 ORN A 5 0 SHEET 2 A 2 TRP A 8 ALA A 11 -1 O DAB A 10 N LEU A 3 LINK N THR A 1 C PRO A 14 1555 1555 1.36 LINK C LEU A 3 N DAB A 4 1555 1555 1.37 LINK C DAB A 4 N ORN A 5 1555 1555 1.38 LINK C ORN A 5 N DLY A 6 1555 1555 1.32 LINK C DLY A 6 N ARG A 7 1555 1555 1.33 LINK C TRP A 8 N ORN A 9 1555 1555 1.38 LINK C ORN A 9 N DAB A 10 1555 1555 1.38 LINK C DAB A 10 N ALA A 11 1555 1555 1.32 LINK C LYS A 12 N DPR A 13 1555 1555 1.36 LINK C DPR A 13 N PRO A 14 1555 1555 1.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000