PDB Short entry for 2MBF HEADER TRANSCRIPTION 30-JUL-13 2MBF TITLE SOLUTION STRUCTURE OF THE FORKHEAD DOMAIN OF BRUGIA MALAYI DAF-16A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORK HEAD DOMAIN CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 342-442; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUGIA MALAYI; SOURCE 3 ORGANISM_COMMON: AGENT OF LYMPHATIC FILARIASIS; SOURCE 4 ORGANISM_TAXID: 6279; SOURCE 5 GENE: BM1_50095; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PQE30 KEYWDS FORKHEAD, FOXO, FOXO3A, WINGED HELIX, INSULIN/IGF-1 SIGNALING, KEYWDS 2 FILARIAL PARASITES, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.T.VELDKAMP,F.C.PETERSON,S.K.CASPER,S.J.SCHOELLER REVDAT 5 14-JUN-23 2MBF 1 REMARK REVDAT 4 10-DEC-14 2MBF 1 JRNL REVDAT 3 29-OCT-14 2MBF 1 JRNL REVDAT 2 15-OCT-14 2MBF 1 JRNL REVDAT 1 11-SEP-13 2MBF 0 JRNL AUTH S.K.CASPER,S.J.SCHOELLER,D.M.ZGOBA,A.J.PHILLIPS,T.J.MORIEN, JRNL AUTH 2 G.R.CHAFFEE,P.C.SACKETT,F.C.PETERSON,K.CROSSGROVE, JRNL AUTH 3 C.T.VELDKAMP JRNL TITL THE SOLUTION STRUCTURE OF THE FORKHEAD BOX-O DNA BINDING JRNL TITL 2 DOMAIN OF BRUGIA MALAYI DAF-16A. JRNL REF PROTEINS V. 82 3490 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 25297652 JRNL DOI 10.1002/PROT.24701 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3, CYANA 3.0 REMARK 3 AUTHORS : REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. (XPLOR-NIH), REMARK 3 GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOMATED METHODS WERE USED FOR REMARK 3 BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. REMARK 3 FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT REMARK 3 SOLVENT. BM-DAF-16A STRUCTURES ARE BASED ON A TOTAL OF 29521 NOE REMARK 3 CONSTRAINTS ( 1771 INTRA, 455 SEQUENTIAL, 415 MEDIUM, 313 LONG REMARK 3 RANGE) AND 114 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS., BM-DAF- REMARK 3 16A STRUCTURES ARE BASED ON A TOTAL OF 29521 NOE CONSTRAINTS ( REMARK 3 1771 INTRA, 455 SEQUENTIAL, 415 MEDIUM, 313 LONG RANGE) AND 114 REMARK 3 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2MBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103440. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-98% 13C; U-98% 15N] REMARK 210 FORKHEAD BOX DNA BINDING DOMAIN REMARK 210 OF BRUGIA MALAYI DAF-16A, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE 2007, XEASY REMARK 210 1.3, GARANT 2.1, CARA 1.8.4, REMARK 210 CYANA 3.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 360 35.52 -161.43 REMARK 500 1 THR A 440 91.73 66.47 REMARK 500 2 THR A 360 37.83 -159.44 REMARK 500 2 LYS A 417 -85.59 -148.56 REMARK 500 2 SER A 418 77.67 58.53 REMARK 500 2 ARG A 435 149.72 71.62 REMARK 500 2 GLN A 436 112.13 71.60 REMARK 500 2 THR A 440 158.09 73.92 REMARK 500 3 THR A 360 38.43 -167.69 REMARK 500 3 LYS A 417 -95.22 55.32 REMARK 500 3 SER A 418 -85.20 -162.26 REMARK 500 3 SER A 438 179.12 65.06 REMARK 500 3 LEU A 441 102.70 173.40 REMARK 500 4 THR A 360 36.61 -155.03 REMARK 500 4 SER A 405 24.00 -76.44 REMARK 500 4 SER A 418 32.51 -93.56 REMARK 500 4 GLN A 436 85.12 -65.42 REMARK 500 4 ALA A 439 163.48 173.91 REMARK 500 4 LEU A 441 17.82 -143.95 REMARK 500 5 THR A 360 79.13 -175.76 REMARK 500 5 SER A 405 46.61 -79.14 REMARK 500 5 ASN A 432 79.43 -160.34 REMARK 500 5 GLN A 436 -84.75 66.94 REMARK 500 5 ARG A 437 28.22 -169.00 REMARK 500 5 SER A 438 -56.29 75.75 REMARK 500 5 ALA A 439 -52.73 -166.85 REMARK 500 5 THR A 440 -56.17 -150.63 REMARK 500 5 LEU A 441 -58.81 -137.95 REMARK 500 6 THR A 360 36.97 -158.48 REMARK 500 6 SER A 405 41.50 -86.00 REMARK 500 6 PRO A 429 97.11 -41.18 REMARK 500 6 SER A 438 -161.37 57.54 REMARK 500 7 THR A 360 33.20 -149.77 REMARK 500 7 SER A 438 148.99 73.54 REMARK 500 8 THR A 360 33.37 -160.11 REMARK 500 8 HIS A 404 40.67 -95.30 REMARK 500 8 SER A 405 31.45 -68.75 REMARK 500 8 ALA A 427 26.44 -140.17 REMARK 500 8 SER A 438 -164.95 56.12 REMARK 500 8 THR A 440 157.99 177.34 REMARK 500 9 THR A 360 36.23 -163.70 REMARK 500 9 GLU A 413 -47.38 -169.62 REMARK 500 9 LYS A 417 -83.93 63.62 REMARK 500 9 SER A 418 75.35 -161.22 REMARK 500 9 ASN A 432 86.94 67.46 REMARK 500 9 ARG A 435 110.65 69.13 REMARK 500 10 THR A 360 35.80 -158.30 REMARK 500 10 LYS A 417 -89.64 60.76 REMARK 500 10 ARG A 437 -33.35 76.46 REMARK 500 10 SER A 438 93.91 64.60 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19398 RELATED DB: BMRB DBREF 2MBF A 342 442 UNP A8QCW6 A8QCW6_BRUMA 342 442 SEQRES 1 A 101 ASN PRO TRP GLY ALA GLU SER TYR SER ASP LEU ILE ALA SEQRES 2 A 101 LYS ALA LEU LYS SER THR PHE ASP GLY ARG MET ARG LEU SEQRES 3 A 101 ASN GLU ILE TYR ASN TRP PHE ALA SER ASN VAL PRO TYR SEQRES 4 A 101 PHE GLY ASN ARG THR SER GLN GLU GLN SER ALA GLY TRP SEQRES 5 A 101 LYS ASN SER ILE ARG HIS ASN LEU SER LEU HIS SER ARG SEQRES 6 A 101 PHE MET ARG ILE GLN ASN GLU GLY ALA GLY LYS SER SER SEQRES 7 A 101 TRP TRP VAL ILE ASN PRO ASP ALA LYS PRO GLY ARG ASN SEQRES 8 A 101 PRO ARG ARG GLN ARG SER ALA THR LEU GLU HELIX 1 1 SER A 348 LYS A 358 1 11 HELIX 2 2 LEU A 367 VAL A 378 1 12 HELIX 3 3 VAL A 378 ASN A 383 1 6 HELIX 4 4 SER A 386 SER A 402 1 17 HELIX 5 5 PRO A 425 LYS A 428 5 4 SHEET 1 A 3 MET A 365 ARG A 366 0 SHEET 2 A 3 TRP A 420 ILE A 423 -1 O TRP A 421 N MET A 365 SHEET 3 A 3 PHE A 407 ARG A 409 -1 N MET A 408 O VAL A 422 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000