PDB Short entry for 2ML9 HEADER MEMBRANE PROTEIN 20-FEB-14 2ML9 TITLE SOLUTION STRUCTURE OF YSCUCN IN A MICELLAR COMPLEX WITH SDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YOP PROTEINS TRANSLOCATION PROTEIN U; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 211-263; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS IP 32953; SOURCE 3 ORGANISM_TAXID: 273123; SOURCE 4 GENE: PYV0074, YSCU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P3 KEYWDS MEMBRANE PROTEIN, YERSINIA, TYPE III SECRETION SYSTEM, YSCU, KEYWDS 2 SECRETION SPECIFICITY, SODIUM DODECYL SULFATE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.F.WEISE,M.WOLF-WATZ REVDAT 2 18-DEC-19 2ML9 1 JRNL REMARK SEQADV REVDAT 1 26-NOV-14 2ML9 0 JRNL AUTH C.F.WEISE,F.H.LOGIN,O.HO,G.GROBNER,H.WOLF-WATZ,M.WOLF-WATZ JRNL TITL NEGATIVELY CHARGED LIPID MEMBRANES PROMOTE A DISORDER-ORDER JRNL TITL 2 TRANSITION IN THE YERSINIA YSCU PROTEIN. JRNL REF BIOPHYS.J. V. 107 1950 2014 JRNL REFN ESSN 1542-0086 JRNL PMID 25418176 JRNL DOI 10.1016/J.BPJ.2014.09.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, PROCHECKNMR, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LASKOWSKI AND MACARTHUR REMARK 3 (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING FROM EXTENDED REMARK 3 STRUCTURE, MINIMIZATION IN TORSION ANGLE/CARTESIAN SPACE REMARK 4 REMARK 4 2ML9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-NOV-14. REMARK 100 THE DEPOSITION ID IS D_1000103750. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 UM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN-1, 30 MM SODIUM REMARK 210 PHOSPHATE-2, 50 MM SODIUM REMARK 210 CHLORIDE-3, 26 MM SDS-4, 92% H2O/ REMARK 210 8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, ANSIG, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LEAST RESTRAINT REMARK 210 VIOLATIONS, FOLLOWED BY REMARK 210 SELECTION BY LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 259 -34.02 -141.70 REMARK 500 1 ALA A 262 -179.16 48.33 REMARK 500 2 LEU A -2 84.90 39.34 REMARK 500 2 SER A 217 24.64 -72.60 REMARK 500 2 VAL A 254 112.98 57.41 REMARK 500 2 LYS A 255 67.27 -163.73 REMARK 500 2 ARG A 256 -49.08 -152.86 REMARK 500 2 VAL A 260 -26.28 -157.62 REMARK 500 3 MET A 216 -7.52 -57.16 REMARK 500 3 SER A 217 -3.96 -58.77 REMARK 500 3 SER A 231 81.65 55.44 REMARK 500 3 GLU A 233 -9.41 -59.60 REMARK 500 3 ARG A 248 31.36 -75.30 REMARK 500 3 LYS A 255 109.62 -56.61 REMARK 500 3 VAL A 260 43.33 -82.14 REMARK 500 4 PRO A -3 -76.67 -68.63 REMARK 500 4 LEU A -2 -17.86 -168.19 REMARK 500 4 ASN A 249 85.06 -64.37 REMARK 500 4 LYS A 255 4.74 -150.48 REMARK 500 4 SER A 257 -61.21 -172.53 REMARK 500 4 VAL A 259 -96.75 -127.61 REMARK 500 4 ALA A 262 -152.59 41.40 REMARK 500 5 SER A 231 74.77 44.90 REMARK 500 5 ASN A 249 97.20 -171.44 REMARK 500 5 VAL A 259 -82.49 -102.07 REMARK 500 6 SER A 231 -47.46 177.73 REMARK 500 6 ARG A 248 22.12 -75.68 REMARK 500 6 VAL A 254 159.42 -48.31 REMARK 500 6 ARG A 256 80.99 -63.66 REMARK 500 6 SER A 257 28.63 -172.27 REMARK 500 6 VAL A 259 -156.57 -98.05 REMARK 500 6 VAL A 260 -2.41 -58.95 REMARK 500 7 LEU A -2 -26.48 -159.75 REMARK 500 7 MET A 216 40.44 -72.68 REMARK 500 7 ASN A 249 94.94 -66.99 REMARK 500 7 SER A 257 -89.78 -46.01 REMARK 500 7 SER A 258 28.85 -168.64 REMARK 500 7 VAL A 260 100.71 -55.14 REMARK 500 8 MET A 216 41.18 -80.37 REMARK 500 8 ASN A 249 -170.52 -55.80 REMARK 500 8 SER A 258 16.11 48.09 REMARK 500 9 SER A 217 112.21 55.19 REMARK 500 9 SER A 231 -61.75 170.78 REMARK 500 9 ARG A 248 24.27 -74.95 REMARK 500 9 LYS A 255 33.67 -85.55 REMARK 500 9 SER A 257 87.10 41.47 REMARK 500 9 SER A 258 89.21 -159.47 REMARK 500 9 VAL A 260 77.19 39.87 REMARK 500 9 ALA A 262 117.69 58.10 REMARK 500 10 PRO A 232 -170.67 -69.97 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JLI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YERSINIA PESTIS YSCUC REMARK 900 RELATED ID: 2V5G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YERSINIA ENTEROCOLITICA YSCUC(N263A) REMARK 900 RELATED ID: 3BZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI ESCUC REMARK 900 RELATED ID: 3BZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI ESCUC(T264A) REMARK 900 RELATED ID: 3C01 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM SPASC REMARK 900 RELATED ID: 19809 RELATED DB: BMRB DBREF 2ML9 A 211 263 UNP P69987 YSCU_YERPS 211 263 SEQADV 2ML9 GLY A -4 UNP P69987 EXPRESSION TAG SEQADV 2ML9 PRO A -3 UNP P69987 EXPRESSION TAG SEQADV 2ML9 LEU A -2 UNP P69987 EXPRESSION TAG SEQADV 2ML9 GLY A -1 UNP P69987 EXPRESSION TAG SEQADV 2ML9 SER A 0 UNP P69987 EXPRESSION TAG SEQRES 1 A 58 GLY PRO LEU GLY SER ILE LYS GLU LEU LYS MET SER LYS SEQRES 2 A 58 ASP GLU ILE LYS ARG GLU TYR LYS GLU MET GLU GLY SER SEQRES 3 A 58 PRO GLU ILE LYS SER LYS ARG ARG GLN PHE HIS GLN GLU SEQRES 4 A 58 ILE GLN SER ARG ASN MET ARG GLU ASN VAL LYS ARG SER SEQRES 5 A 58 SER VAL VAL VAL ALA ASN HELIX 1 1 GLY A -4 GLY A 230 1 25 HELIX 2 2 PRO A 232 SER A 247 1 16 HELIX 3 3 ASN A 249 VAL A 254 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000