PDB Short entry for 2MLH HEADER MEMBRANE PROTEIN 27-FEB-14 2MLH TITLE NMR SOLUTION STRUCTURE OF OPA60 FROM N. GONORRHOEAE IN FC-12 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPACITY PROTEIN OPA60; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 STRAIN: MS11; SOURCE 5 GENE: OPAH; SOURCE 6 EXPRESSION_SYSTEM: NEISSERIA GONORRHOEAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 485; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS MEMBRANE PROTEIN, BETA-BARREL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.A.FOX,P.LARSSON,R.H.LO,B.M.KRONCKE,P.M.KASSON,L.COLUMBUS REVDAT 3 14-JUN-23 2MLH 1 REMARK REVDAT 2 30-JUL-14 2MLH 1 JRNL REVDAT 1 25-JUN-14 2MLH 0 JRNL AUTH D.A.FOX,P.LARSSON,R.H.LO,B.M.KRONCKE,P.M.KASSON,L.COLUMBUS JRNL TITL STRUCTURE OF THE NEISSERIAL OUTER MEMBRANE PROTEIN OPA60: JRNL TITL 2 LOOP FLEXIBILITY ESSENTIAL TO RECEPTOR RECOGNITION AND JRNL TITL 3 BACTERIAL ENGULFMENT. JRNL REF J.AM.CHEM.SOC. V. 136 9938 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 24813921 JRNL DOI 10.1021/JA503093Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.31, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MLH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000103758. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 800 UM [U-100% 13C; U-100% 15N; REMARK 210 U-80% 2H] OPA60, 150 MM DODECYL REMARK 210 PHOSPHCHOLINE, 20 MM SODIUM REMARK 210 PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D HNCO; 3D 1H-15N REMARK 210 NOESY; 3D HN(CO)CA; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4.2, NMRPIPE 7.9, REMARK 210 TOPSPIN 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 134 HH21 ARG A 235 1.31 REMARK 500 OH TYR A 134 HH21 ARG A 235 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 16 -116.12 144.43 REMARK 500 1 TYR A 17 147.40 58.23 REMARK 500 1 ILE A 22 38.60 -73.74 REMARK 500 1 GLU A 28 -55.66 -176.28 REMARK 500 1 ALA A 31 156.01 59.26 REMARK 500 1 SER A 38 88.83 54.79 REMARK 500 1 SER A 41 -103.28 -142.84 REMARK 500 1 ASN A 46 -77.33 176.21 REMARK 500 1 ILE A 47 151.65 56.84 REMARK 500 1 ARG A 48 167.75 60.14 REMARK 500 1 THR A 49 -44.14 71.53 REMARK 500 1 SER A 51 88.85 48.99 REMARK 500 1 VAL A 52 -94.08 -73.02 REMARK 500 1 HIS A 53 71.50 179.45 REMARK 500 1 ARG A 55 90.76 32.94 REMARK 500 1 ARG A 73 150.14 59.05 REMARK 500 1 TYR A 74 105.38 95.52 REMARK 500 1 ASN A 80 179.35 49.51 REMARK 500 1 TYR A 82 89.33 -54.10 REMARK 500 1 ILE A 97 77.01 56.62 REMARK 500 1 ASN A 105 -51.47 -127.65 REMARK 500 1 GLN A 106 70.11 45.33 REMARK 500 1 PHE A 111 -6.82 -152.14 REMARK 500 1 SER A 115 101.19 49.04 REMARK 500 1 VAL A 144 -24.41 -142.53 REMARK 500 1 SER A 150 -97.18 -83.63 REMARK 500 1 ASN A 166 -5.66 -146.58 REMARK 500 1 THR A 170 174.06 50.58 REMARK 500 1 THR A 171 111.96 52.09 REMARK 500 1 ASP A 181 75.80 48.95 REMARK 500 1 GLN A 183 -96.19 -99.23 REMARK 500 1 ARG A 188 102.06 -50.45 REMARK 500 1 ARG A 219 99.37 -66.18 REMARK 500 1 LEU A 220 174.63 53.34 REMARK 500 1 ARG A 224 -72.17 -72.92 REMARK 500 1 LYS A 226 -122.05 -99.22 REMARK 500 1 HIS A 228 -69.02 65.85 REMARK 500 1 GLU A 229 82.21 -154.50 REMARK 500 1 SER A 231 -50.66 163.80 REMARK 500 2 TYR A 19 -111.04 -74.83 REMARK 500 2 GLU A 20 76.38 41.77 REMARK 500 2 ILE A 22 -88.13 -61.51 REMARK 500 2 HIS A 24 55.41 -99.99 REMARK 500 2 ASP A 25 118.70 56.39 REMARK 500 2 PRO A 27 -146.64 -53.00 REMARK 500 2 GLU A 28 65.72 65.58 REMARK 500 2 THR A 30 113.32 59.74 REMARK 500 2 ILE A 37 -88.12 42.32 REMARK 500 2 VAL A 40 -12.89 -173.63 REMARK 500 2 ARG A 45 22.08 -168.48 REMARK 500 REMARK 500 THIS ENTRY HAS 1021 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19343 RELATED DB: BMRB REMARK 900 RELATED ID: 2MAF RELATED DB: PDB DBREF 2MLH A 1 238 UNP Q04884 OPAH_NEIGO 1 238 SEQRES 1 A 238 ALA SER GLU ASP GLY GLY ARG GLY PRO TYR VAL GLN ALA SEQRES 2 A 238 ASP LEU ALA TYR ALA TYR GLU HIS ILE THR HIS ASP TYR SEQRES 3 A 238 PRO GLU PRO THR ALA PRO ASN LYS ASN LYS ILE SER THR SEQRES 4 A 238 VAL SER ASP TYR PHE ARG ASN ILE ARG THR ARG SER VAL SEQRES 5 A 238 HIS PRO ARG VAL SER VAL GLY TYR ASP PHE GLY GLY TRP SEQRES 6 A 238 ARG ILE ALA ALA ASP TYR ALA ARG TYR ARG LYS TRP ASN SEQRES 7 A 238 ASN ASN LYS TYR SER VAL ASN ILE GLU ASN VAL ARG ILE SEQRES 8 A 238 ARG LYS GLU ASN GLY ILE ARG ILE ASP ARG LYS THR GLU SEQRES 9 A 238 ASN GLN GLU ASN GLY THR PHE HIS ALA VAL SER SER LEU SEQRES 10 A 238 GLY LEU SER ALA ILE TYR ASP PHE GLN ILE ASN ASP LYS SEQRES 11 A 238 PHE LYS PRO TYR ILE GLY ALA ARG VAL ALA TYR GLY HIS SEQRES 12 A 238 VAL ARG HIS SER ILE ASP SER THR LYS LYS THR ILE GLU SEQRES 13 A 238 VAL THR THR VAL PRO SER ASN ALA PRO ASN GLY ALA VAL SEQRES 14 A 238 THR THR TYR ASN THR ASP PRO LYS THR GLN ASN ASP TYR SEQRES 15 A 238 GLN SER ASN SER ILE ARG ARG VAL GLY LEU GLY VAL ILE SEQRES 16 A 238 ALA GLY VAL GLY PHE ASP ILE THR PRO LYS LEU THR LEU SEQRES 17 A 238 ASP ALA GLY TYR ARG TYR HIS ASN TRP GLY ARG LEU GLU SEQRES 18 A 238 ASN THR ARG PHE LYS THR HIS GLU ALA SER LEU GLY VAL SEQRES 19 A 238 ARG TYR ARG PHE HELIX 1 1 VAL A 160 ALA A 164 5 5 SHEET 1 A 9 GLY A 8 LEU A 15 0 SHEET 2 A 9 VAL A 56 ASP A 61 -1 O SER A 57 N GLN A 12 SHEET 3 A 9 GLY A 64 TYR A 71 -1 O ALA A 69 N VAL A 58 SHEET 4 A 9 LEU A 117 ASP A 124 -1 O ILE A 122 N ARG A 66 SHEET 5 A 9 PHE A 131 TYR A 141 -1 O VAL A 139 N LEU A 119 SHEET 6 A 9 GLY A 191 THR A 203 -1 O GLY A 197 N TYR A 134 SHEET 7 A 9 LEU A 206 HIS A 215 -1 O LEU A 206 N ILE A 202 SHEET 8 A 9 LEU A 232 TYR A 236 -1 O GLY A 233 N ASP A 209 SHEET 9 A 9 GLY A 8 LEU A 15 -1 N LEU A 15 O LEU A 232 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000