PDB Short entry for 2MLL HEADER RIBOSOME 16-MAR-99 2MLL TITLE MISTLETOE LECTIN I FROM VISCUM ALBUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II); COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PROTEIN (RIBOSOME-INACTIVATING PROTEIN TYPE II); COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 3 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 4 ORGANISM_TAXID: 3972; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 7 ORGANISM_COMMON: EUROPEAN MISTLETOE; SOURCE 8 ORGANISM_TAXID: 3972 KEYWDS RIBOSOME-INACTIVATING PROTEIN TYPE II, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR R.KRAUSPENHAAR,S.ESCHENBURG,M.PERBANDT,V.KORNILOV,N.KONAREVA, AUTHOR 2 I.MIKAILOVA,S.STOEVA,R.WACKER,T.MAIER,T.P.SINGH,A.MIKHAILOV, AUTHOR 3 W.VOELTER,C.BETZEL REVDAT 6 30-AUG-23 2MLL 1 HETSYN REVDAT 5 29-JUL-20 2MLL 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 2MLL 1 VERSN REVDAT 3 24-FEB-09 2MLL 1 VERSN REVDAT 2 24-JUN-03 2MLL 1 AUTHOR JRNL REVDAT 1 20-MAR-00 2MLL 0 JRNL AUTH R.KRAUSPENHAAR,S.ESCHENBURG,M.PERBANDT,V.KORNILOV, JRNL AUTH 2 N.KONAREVA,I.MIKAILOVA,S.STOEVA,R.WACKER,T.MAIER,T.SINGH, JRNL AUTH 3 A.MIKHAILOV,W.VOELTER,C.BETZEL JRNL TITL CRYSTAL STRUCTURE OF MISTLETOE LECTIN I FROM VISCUM ALBUM. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 257 418 1999 JRNL REFN ISSN 0006-291X JRNL PMID 10198229 JRNL DOI 10.1006/BBRC.1999.0470 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.066 ; 0.055 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.077 ; 0.060 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.172 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 45.400; 15.000 REMARK 3 PLANAR (DEGREES) : 10.700; 3.500 REMARK 3 STAGGERED (DEGREES) : 25.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 30.300; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-99. REMARK 100 THE DEPOSITION ID IS D_1000000663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.060 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 10.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2AAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 207.51867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.75933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.63900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.87967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 259.39833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 207.51867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 103.75933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.87967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 155.63900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 259.39833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 102 O HOH A 361 1.82 REMARK 500 NH2 ARG A 102 O HOH A 377 1.84 REMARK 500 NH2 ARG A 102 O HOH A 361 1.94 REMARK 500 OD1 ASN B 57 O HOH B 334 1.99 REMARK 500 NH2 ARG B 237 O HOH B 398 2.17 REMARK 500 CZ ARG A 102 O HOH A 361 2.17 REMARK 500 O PHE A 140 O HOH A 326 2.19 REMARK 500 CB ALA B 205 O HOH B 316 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 336 O HOH A 336 10665 0.98 REMARK 500 O HOH B 409 O HOH B 409 12554 1.13 REMARK 500 O HOH B 319 O HOH B 319 12554 1.27 REMARK 500 O HOH A 358 O HOH A 358 10665 1.95 REMARK 500 O GLY B 69 O HOH B 319 12554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 1 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 GLU A 2 CB - CA - C ANGL. DEV. = 15.0 DEGREES REMARK 500 GLU A 2 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 3 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 3 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = -9.7 DEGREES REMARK 500 THR A 9 CA - C - O ANGL. DEV. = 12.9 DEGREES REMARK 500 THR A 9 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 ALA A 10 C - N - CA ANGL. DEV. = 21.9 DEGREES REMARK 500 GLN A 11 CB - CA - C ANGL. DEV. = 21.5 DEGREES REMARK 500 GLN A 11 CB - CG - CD ANGL. DEV. = 29.4 DEGREES REMARK 500 GLN A 11 OE1 - CD - NE2 ANGL. DEV. = -16.9 DEGREES REMARK 500 GLN A 11 CA - C - O ANGL. DEV. = 18.9 DEGREES REMARK 500 GLN A 11 O - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 THR A 12 C - N - CA ANGL. DEV. = 24.5 DEGREES REMARK 500 SER A 34 N - CA - CB ANGL. DEV. = 9.2 DEGREES REMARK 500 SER A 43 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLY A 64 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 VAL A 67 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 TYR A 75 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR A 79 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 TYR A 79 CG - CD2 - CE2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TYR A 79 CZ - CE2 - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR A 86 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 LEU A 88 CA - C - N ANGL. DEV. = 15.2 DEGREES REMARK 500 SER A 89 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 SER A 89 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 GLY A 90 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 GLY A 93 C - N - CA ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 94 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLY A 95 N - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 THR A 100 CA - CB - CG2 ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 102 O - C - N ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU A 105 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 ASN A 108 CB - CG - OD1 ANGL. DEV. = 14.9 DEGREES REMARK 500 ASN A 108 CB - CG - ND2 ANGL. DEV. = -14.9 DEGREES REMARK 500 GLN A 116 CB - CG - CD ANGL. DEV. = 18.9 DEGREES REMARK 500 GLN A 116 CG - CD - OE1 ANGL. DEV. = 15.3 DEGREES REMARK 500 GLN A 120 CG - CD - OE1 ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 121 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 121 CD - NE - CZ ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 129 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 GLY A 142 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 GLY A 142 CA - C - O ANGL. DEV. = -20.1 DEGREES REMARK 500 GLY A 142 CA - C - N ANGL. DEV. = 22.2 DEGREES REMARK 500 SER A 143 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 189 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 10 -143.97 -80.10 REMARK 500 ALA A 36 -14.82 88.05 REMARK 500 GLU A 48 99.18 -21.74 REMARK 500 ALA A 49 -46.74 179.11 REMARK 500 ASN A 73 3.98 -164.25 REMARK 500 LEU A 74 18.65 53.89 REMARK 500 ALA A 81 -83.60 -78.21 REMARK 500 SER A 83 9.24 -154.14 REMARK 500 SER A 89 63.43 -46.38 REMARK 500 ARG A 94 -169.64 35.85 REMARK 500 SER A 110 117.43 -15.89 REMARK 500 SER A 143 141.30 159.69 REMARK 500 THR A 144 -74.47 59.84 REMARK 500 ILE A 158 -66.59 -130.81 REMARK 500 VAL A 201 -77.13 -52.38 REMARK 500 PRO A 218 88.94 -2.60 REMARK 500 LEU A 234 97.76 -63.65 REMARK 500 ILE A 236 144.47 -174.19 REMARK 500 PHE A 239 123.28 -39.61 REMARK 500 ARG B 13 134.34 -29.97 REMARK 500 ASN B 14 15.34 49.53 REMARK 500 VAL B 18 104.45 -58.94 REMARK 500 SER B 38 97.16 -41.27 REMARK 500 LEU B 61 108.46 -57.78 REMARK 500 ALA B 80 -169.58 -51.49 REMARK 500 ILE B 89 98.70 -68.16 REMARK 500 ASP B 121 -5.53 -141.24 REMARK 500 TYR B 122 64.94 74.24 REMARK 500 PHE B 144 120.33 -20.38 REMARK 500 LYS B 165 -25.42 158.37 REMARK 500 SER B 193 -119.14 -82.36 REMARK 500 VAL B 194 48.66 -157.57 REMARK 500 ALA B 195 149.53 167.62 REMARK 500 VAL B 200 -128.76 -91.98 REMARK 500 LEU B 226 -175.22 -68.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 107 ASN A 108 149.59 REMARK 500 PRO A 141 GLY A 142 -148.07 REMARK 500 GLY A 221 VAL A 222 146.60 REMARK 500 GLY B 164 LYS B 165 83.80 REMARK 500 GLY B 196 VAL B 197 -114.59 REMARK 500 ALA B 206 SER B 207 143.86 REMARK 500 ALA B 231 ASN B 232 -92.98 REMARK 500 ASN B 232 PRO B 233 -139.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 2 10.90 REMARK 500 LEU A 23 -10.52 REMARK 500 SER A 30 14.17 REMARK 500 GLY A 44 -13.08 REMARK 500 GLY A 50 14.17 REMARK 500 GLY A 64 20.93 REMARK 500 TYR A 86 11.39 REMARK 500 SER A 89 -11.07 REMARK 500 ARG A 102 20.96 REMARK 500 SER A 104 -20.50 REMARK 500 PHE A 107 -12.93 REMARK 500 GLY A 109 -11.68 REMARK 500 SER A 110 -12.11 REMARK 500 GLN A 123 -12.36 REMARK 500 PRO A 125 12.30 REMARK 500 GLN A 130 12.97 REMARK 500 ILE A 132 -13.31 REMARK 500 SER A 134 -10.73 REMARK 500 PHE A 140 -10.21 REMARK 500 ARG A 145 -16.99 REMARK 500 PHE A 164 -11.66 REMARK 500 THR A 205 -16.88 REMARK 500 PHE A 209 -10.14 REMARK 500 ILE A 213 -11.62 REMARK 500 VAL A 230 -15.80 REMARK 500 PHE A 239 16.66 REMARK 500 SER B 4 16.15 REMARK 500 VAL B 11 23.52 REMARK 500 LEU B 33 14.65 REMARK 500 GLN B 44 -11.97 REMARK 500 THR B 47 -15.00 REMARK 500 THR B 53 16.51 REMARK 500 ILE B 54 18.53 REMARK 500 SER B 56 12.88 REMARK 500 ASP B 76 -17.41 REMARK 500 ALA B 78 14.79 REMARK 500 THR B 85 -19.93 REMARK 500 ILE B 89 10.50 REMARK 500 ASN B 92 -16.75 REMARK 500 THR B 94 -16.61 REMARK 500 SER B 100 14.54 REMARK 500 THR B 114 12.87 REMARK 500 THR B 116 -18.67 REMARK 500 VAL B 117 10.66 REMARK 500 TYR B 122 -10.90 REMARK 500 THR B 123 -13.75 REMARK 500 GLY B 131 -12.17 REMARK 500 ASP B 133 -13.31 REMARK 500 THR B 140 13.52 REMARK 500 GLY B 152 11.20 REMARK 500 REMARK 500 THIS ENTRY HAS 71 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 303 DBREF 2MLL B 1 255 UNP P81830 MLB1_VISAL 5 264 DBREF 2MLL A 1 241 PDB 2MLL 2MLL 1 241 SEQRES 1 A 241 TYR GLU ARG GLY ASP LEU ASP VAL THR ALA GLN THR THR SEQRES 2 A 241 GLY ALA GLY TYR PHE SER PHE ILE THR LEU LEU ARG ASP SEQRES 3 A 241 TYR VAL SER SER GLY SER PHE SER ASN ALA ILE PRO LEU SEQRES 4 A 241 LEU SER GLN SER GLY GLY GLY GLY GLU ALA GLY ARG PHE SEQRES 5 A 241 VAL LEU VAL GLU LEU THR ASN SER GLY GLY ASP GLY ILE SEQRES 6 A 241 THR VAL ALA ILE ASP VAL THR ASN LEU TYR VAL VAL ALA SEQRES 7 A 241 TYR GLN ALA GLY SER GLN SER TYR PHE LEU SER GLY PRO SEQRES 8 A 241 GLY GLY ARG GLY GLY PHE THR GLY THR THR ARG SER SER SEQRES 9 A 241 LEU PRO PHE ASN GLY SER TYR PRO ASP LEU GLU GLN TYR SEQRES 10 A 241 GLY GLY GLN ARG LYS GLN ILE PRO LEU GLY ILE ASP GLN SEQRES 11 A 241 LEU ILE GLN SER VAL THR ALA LEU LYS PHE PRO GLY SER SEQRES 12 A 241 THR ARG THR GLY ALA ARG SER ILE LEU ILE LEU ILE GLN SEQRES 13 A 241 MET ILE SER GLU ALA ALA ARG PHE ASN PRO ILE LEU TRP SEQRES 14 A 241 ARG ALA ARG GLN TYR ILE ASN SER GLY ALA SER PHE LEU SEQRES 15 A 241 PRO ASP VAL TYR MET LEU GLU LEU GLU THR SER TRP GLY SEQRES 16 A 241 GLN GLN SER THR GLN VAL GLN HIS SER THR ASP GLY VAL SEQRES 17 A 241 PHE ASN ASN PRO ILE ALA LEU ALA ASP PRO GLY GLY GLY SEQRES 18 A 241 VAL THR LEU THR ASN VAL ARG ASP VAL ILE ALA SER LEU SEQRES 19 A 241 ALA ILE MET LEU PHE VAL CYS SEQRES 1 B 255 CYS SER ALA SER GLU PRO THR VAL ARG ILE VAL GLY ARG SEQRES 2 B 255 ASN GLY MET ASN VAL ASP VAL ARG ASP ASP ASP PHE HIS SEQRES 3 B 255 ASP GLY ASN GLN ILE GLN LEU TRP PRO SER LYS SER ASN SEQRES 4 B 255 ASN ASP PRO ASN GLN LEU TRP THR ILE LYS ARG ASP GLY SEQRES 5 B 255 THR ILE ARG SER ASN GLY SER CYS LEU THR THR TYR GLY SEQRES 6 B 255 TYR THR ALA GLY VAL TYR VAL MET ILE PHE ASP CYS ALA SEQRES 7 B 255 THR ALA VAL GLY GLU ALA THR VAL TRP GLN ILE TRP GLY SEQRES 8 B 255 ASN GLY THR ILE ILE ASN PRO ARG SER ASN LEU VAL LEU SEQRES 9 B 255 ALA ALA SER SER GLY ILE LYS GLY THR THR LEU THR VAL SEQRES 10 B 255 GLN THR LEU ASP TYR THR LEU GLY GLN GLY TRP LEU ALA SEQRES 11 B 255 GLY ASN ASP THR ALA PRO ARG GLU VAL THR ILE TYR GLY SEQRES 12 B 255 PHE ASN ASP LEU CYS MET GLU SER GLY GLY GLY SER VAL SEQRES 13 B 255 THR VAL GLU THR CYS SER SER GLY LYS ALA ASP LYS TRP SEQRES 14 B 255 ALA LEU TYR GLY ASP GLY SER ILE ARG PRO GLU GLN ASN SEQRES 15 B 255 GLN ALA GLN CYS LEU THR SER GLY GLY ASP SER VAL ALA SEQRES 16 B 255 GLY VAL ASN ILE VAL SER CYS SER GLY ALA ALA SER GLY SEQRES 17 B 255 GLN ARG TRP VAL PHE THR ASN GLU GLY ALA ILE LEU ASN SEQRES 18 B 255 LEU LYS ASN GLY LEU ALA MET ASP VAL ALA ASN PRO GLY SEQRES 19 B 255 GLY GLY ARG ILE ILE ILE TYR PRO ALA THR GLY LYS PRO SEQRES 20 B 255 ASN GLN MET TRP LEU PRO VAL PHE MODRES 2MLL ASN B 92 ASN GLYCOSYLATION SITE MODRES 2MLL ASN B 132 ASN GLYCOSYLATION SITE HET NAG A 303 14 HET NAG B 301 14 HET NAG B 302 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 HOH *215(H2 O) HELIX 1 1 GLY A 14 VAL A 28 1 15 HELIX 2 2 TYR A 111 GLY A 118 1 8 HELIX 3 3 ARG A 121 GLN A 123 5 3 HELIX 4 4 ASP A 129 LYS A 139 1 11 HELIX 5 5 THR A 144 ILE A 158 5 15 HELIX 6 6 GLU A 160 ARG A 163 1 4 HELIX 7 7 ASN A 165 SER A 177 1 13 HELIX 8 8 VAL A 185 HIS A 203 1 19 HELIX 9 9 VAL A 227 VAL A 230 1 4 HELIX 10 10 ARG B 13 GLY B 15 5 3 HELIX 11 11 ARG B 21 ASP B 23 5 3 HELIX 12 12 PRO B 42 GLN B 44 5 3 HELIX 13 13 GLY B 82 THR B 85 1 4 HELIX 14 14 LEU B 124 GLN B 126 5 3 HELIX 15 15 PHE B 144 ASP B 146 5 3 HELIX 16 16 SER B 207 GLN B 209 5 3 HELIX 17 17 PRO B 233 GLY B 235 5 3 HELIX 18 18 PRO B 247 GLN B 249 5 3 SHEET 1 A 4 ARG A 3 THR A 9 0 SHEET 2 A 4 PHE A 52 ASN A 59 1 N LEU A 54 O ARG A 3 SHEET 3 A 4 GLY A 64 ASP A 70 -1 N ILE A 69 O VAL A 53 SHEET 4 A 4 VAL A 76 GLN A 80 -1 N GLN A 80 O THR A 66 SHEET 1 B 2 GLN A 84 PHE A 87 0 SHEET 2 B 2 THR A 101 SER A 104 1 N THR A 101 O SER A 85 SHEET 1 C 2 ILE A 213 LEU A 215 0 SHEET 2 C 2 VAL A 222 LEU A 224 -1 N LEU A 224 O ILE A 213 SHEET 1 D 2 ASN B 17 VAL B 20 0 SHEET 2 D 2 ILE B 31 TRP B 34 -1 N TRP B 34 O ASN B 17 SHEET 1 E 2 CYS B 60 THR B 63 0 SHEET 2 E 2 VAL B 72 PHE B 75 -1 N PHE B 75 O CYS B 60 SHEET 1 F 2 TRP B 87 ILE B 89 0 SHEET 2 F 2 ILE B 95 ASN B 97 -1 N ILE B 96 O GLN B 88 SHEET 1 G 2 VAL B 103 ALA B 105 0 SHEET 2 G 2 THR B 116 GLN B 118 -1 N GLN B 118 O VAL B 103 SHEET 1 H 3 ARG B 137 VAL B 139 0 SHEET 2 H 3 TRP B 169 TYR B 172 -1 N LEU B 171 O ARG B 137 SHEET 3 H 3 SER B 176 PRO B 179 -1 N ARG B 178 O ALA B 170 SHEET 1 I 2 THR B 140 GLY B 143 0 SHEET 2 I 2 TRP B 251 VAL B 254 -1 N VAL B 254 O THR B 140 SHEET 1 J 2 LEU B 147 GLY B 152 0 SHEET 2 J 2 SER B 155 THR B 160 -1 N GLU B 159 O CYS B 148 SHEET 1 K 2 TRP B 211 PHE B 213 0 SHEET 2 K 2 ILE B 219 ASN B 221 -1 N LEU B 220 O VAL B 212 SHEET 1 L 2 ALA B 227 VAL B 230 0 SHEET 2 L 2 ILE B 238 TYR B 241 -1 N TYR B 241 O ALA B 227 SSBOND 1 CYS A 241 CYS B 1 1555 1555 2.00 SSBOND 2 CYS B 60 CYS B 77 1555 1555 1.99 SSBOND 3 CYS B 148 CYS B 161 1555 1555 2.12 SSBOND 4 CYS B 186 CYS B 202 1555 1555 2.01 LINK ND2 ASN B 92 C1 NAG B 301 1555 1555 1.41 LINK ND2 ASN B 132 C1 NAG B 302 1555 1555 1.39 CRYST1 107.648 107.648 311.278 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009289 0.005363 0.000000 0.00000 SCALE2 0.000000 0.010727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003212 0.00000