PDB Short entry for 2MMJ HEADER ANTIMICROBIAL PROTEIN 15-MAR-14 2MMJ TITLE STRUCTURE OF A PEPTOID ANALOGUE OF MACULATIN G15 IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACULATIN G15; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: LITORIA GENIMACULATA; SOURCE 4 ORGANISM_COMMON: GREEN-EYED TREE FROG; SOURCE 5 ORGANISM_TAXID: 95132; SOURCE 6 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS PEPTOID, N-SUBSTITUTED GLYCINE, MACULATIN, ANTIMICROBIAL PEPTIDE, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.E.UGGERHOEJ,P.GUENTERT,R.WIMMER REVDAT 5 14-JUN-23 2MMJ 1 REMARK LINK REVDAT 4 03-DEC-14 2MMJ 1 JRNL REVDAT 3 27-AUG-14 2MMJ 1 HET HETATM HETNAM REVDAT 2 30-JUL-14 2MMJ 1 DBREF REVDAT 1 23-JUL-14 2MMJ 0 JRNL AUTH L.E.UGGERHJ,J.K.MUNK,P.R.HANSEN,P.GUNTERT,R.WIMMER JRNL TITL STRUCTURAL FEATURES OF PEPTOID-PEPTIDE HYBRIDS IN JRNL TITL 2 LIPID-WATER INTERFACES. JRNL REF FEBS LETT. V. 588 3291 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 25063337 JRNL DOI 10.1016/J.FEBSLET.2014.07.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000103792. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.1 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3 MM ENTITY_1-1, 2 MM SODIUM REMARK 210 AZIDE-2, 150 MM [U-2H] DPC-3, 10 REMARK 210 MM POTASSIUM PHOSPHATE-4, 95% REMARK 210 H2O/5% D2O; 3 MM ENTITY_1-5, 2 REMARK 210 MM SODIUM AZIDE-6, 150 MM [U-2H] REMARK 210 DPC-7, 10 MM POTASSIUM PHOSPHATE- REMARK 210 8, 2-10 MM GD(DTPA-BMA)-9, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; PSEUDO-3D-INVERSION REMARK 210 RECOVERY WEIGHTED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, CARA 1.8.4, CYANA REMARK 210 2.1, TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 ALA A 10 C I4G A 11 N 0.207 REMARK 500 1 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 2 ALA A 10 C I4G A 11 N 0.207 REMARK 500 2 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 3 ALA A 10 C I4G A 11 N 0.208 REMARK 500 3 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 4 ALA A 10 C I4G A 11 N 0.207 REMARK 500 4 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 5 ALA A 10 C I4G A 11 N 0.207 REMARK 500 5 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 6 ALA A 10 C I4G A 11 N 0.209 REMARK 500 6 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 7 ALA A 10 C I4G A 11 N 0.208 REMARK 500 7 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 8 ALA A 10 C I4G A 11 N 0.207 REMARK 500 8 PHE A 21 C NH2 A 22 N 0.180 REMARK 500 9 ALA A 10 C I4G A 11 N 0.207 REMARK 500 9 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 10 ALA A 10 C I4G A 11 N 0.208 REMARK 500 10 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 11 ALA A 10 C I4G A 11 N 0.208 REMARK 500 11 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 12 ALA A 10 C I4G A 11 N 0.208 REMARK 500 12 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 13 ALA A 10 C I4G A 11 N 0.207 REMARK 500 13 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 14 ALA A 10 C I4G A 11 N 0.208 REMARK 500 14 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 15 ALA A 10 C I4G A 11 N 0.207 REMARK 500 15 PHE A 21 C NH2 A 22 N 0.182 REMARK 500 16 ALA A 10 C I4G A 11 N 0.208 REMARK 500 16 PHE A 21 C NH2 A 22 N 0.180 REMARK 500 17 ALA A 10 C I4G A 11 N 0.208 REMARK 500 17 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 18 ALA A 10 C I4G A 11 N 0.208 REMARK 500 18 PHE A 21 C NH2 A 22 N 0.180 REMARK 500 19 ALA A 10 C I4G A 11 N 0.207 REMARK 500 19 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 20 ALA A 10 C I4G A 11 N 0.207 REMARK 500 20 PHE A 21 C NH2 A 22 N 0.181 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 10 98.05 -161.32 REMARK 500 1 I4G A 11 -33.34 123.14 REMARK 500 2 I4G A 11 -35.89 124.65 REMARK 500 3 I4G A 11 -35.62 124.41 REMARK 500 4 I4G A 11 -35.61 124.28 REMARK 500 5 I4G A 11 -35.57 124.34 REMARK 500 6 I4G A 11 -36.05 125.46 REMARK 500 7 I4G A 11 -36.13 125.51 REMARK 500 8 I4G A 11 -36.91 126.05 REMARK 500 9 I4G A 11 -36.85 126.02 REMARK 500 10 ALA A 10 100.24 -172.66 REMARK 500 10 I4G A 11 -35.23 123.83 REMARK 500 11 ALA A 10 100.15 -172.24 REMARK 500 11 I4G A 11 -35.44 124.08 REMARK 500 12 ALA A 10 100.46 -172.85 REMARK 500 12 I4G A 11 -34.87 123.52 REMARK 500 13 ALA A 10 100.04 -172.15 REMARK 500 13 I4G A 11 -35.52 124.17 REMARK 500 14 I4G A 11 -36.82 125.98 REMARK 500 15 ALA A 10 100.39 -171.08 REMARK 500 15 I4G A 11 -35.52 124.12 REMARK 500 16 ALA A 10 98.01 -160.39 REMARK 500 16 I4G A 11 -41.35 129.05 REMARK 500 17 ALA A 10 98.01 -160.47 REMARK 500 17 I4G A 11 -41.41 129.07 REMARK 500 18 ALA A 10 97.94 -160.36 REMARK 500 18 I4G A 11 -41.40 129.12 REMARK 500 19 ALA A 10 100.44 -171.19 REMARK 500 19 I4G A 11 -35.32 124.06 REMARK 500 20 ALA A 10 99.85 -165.44 REMARK 500 20 I4G A 11 -26.20 119.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19856 RELATED DB: BMRB DBREF 2MMJ A 1 21 PDB 2MMJ 2MMJ 1 21 SEQRES 1 A 22 GLY LEU PHE GLY VAL LEU ALA LYS VAL ALA I4G HIS VAL SEQRES 2 A 22 VAL GLY ALA ILE ALA GLU HIS PHE NH2 MODRES 2MMJ I4G A 11 GLY N-(2-METHYLPROPYL)GLYCINE HET I4G A 11 19 HET NH2 A 22 3 HETNAM I4G N-(2-METHYLPROPYL)GLYCINE HETNAM NH2 AMINO GROUP FORMUL 1 I4G C6 H13 N O2 FORMUL 1 NH2 H2 N HELIX 1 1 LEU A 2 ALA A 7 1 6 HELIX 2 2 LYS A 8 ALA A 10 5 3 HELIX 3 3 HIS A 12 PHE A 21 1 10 LINK C ALA A 10 N I4G A 11 1555 1555 1.54 LINK C I4G A 11 N HIS A 12 1555 1555 1.33 LINK C PHE A 21 N NH2 A 22 1555 1555 1.52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000