PDB Short entry for 2MST HEADER RNA BINDING PROTEIN 19-MAY-99 2MST TITLE MUSASHI1 RBD2, NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (MUSASHI1); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_CELL: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A; SOURCE 10 EXPRESSION_SYSTEM_GENE: PET3A; SOURCE 11 OTHER_DETAILS: PCR KEYWDS RNA-BINDING DOMAIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,R.KANNO,Y.KURIHARA,S.UESUGI,T.IMAI,S.SAKAKIBARA,H.OKANO, AUTHOR 2 M.KATAHIRA REVDAT 3 16-MAR-22 2MST 1 REMARK REVDAT 2 24-FEB-09 2MST 1 VERSN REVDAT 1 19-MAY-00 2MST 0 JRNL AUTH T.NAGATA,R.KANNO,Y.KURIHARA,S.UESUGI,T.IMAI,S.SAKAKIBARA, JRNL AUTH 2 H.OKANO,M.KATAHIRA JRNL TITL STRUCTURE, BACKBONE DYNAMICS AND INTERACTIONS WITH RNA OF JRNL TITL 2 THE C-TERMINAL RNA-BINDING DOMAIN OF A MOUSE NEURAL JRNL TITL 3 RNA-BINDING PROTEIN, MUSASHI1. JRNL REF J.MOL.BIOL. V. 287 315 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10080895 JRNL DOI 10.1006/JMBI.1999.2596 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.KURIHARA,T.NAGATA,T.IMAI,A.HIWATASHI,M.HORIUCHI, REMARK 1 AUTH 2 S.SAKAKIBARA,M.KATAHIRA,H.OKANO,S.UESUGI REMARK 1 TITL STRUCTURAL PROPERTIES AND RNA-BINDING ACTIVITIES OF TWO RNA REMARK 1 TITL 2 RECOGNITION MOTIFS OF A MOUSE NEURAL RNA-BINDING PROTEIN, REMARK 1 TITL 3 MOUSE-MUSASHI-1 REMARK 1 REF GENE V. 186 21 1997 REMARK 1 REFN ISSN 0378-1119 REMARK 1 DOI 10.1016/S0378-1119(96)00673-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1, X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MST COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001089. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; DQF-COSY; 1H-15N REMARK 210 2D HSQC; 15N-EDITED NOESY-HSQC; REMARK 210 15N-EDITED TOCSY-HSQC; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1, X-PLOR 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWER ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 121 H ASP A 124 1.50 REMARK 500 O VAL A 118 H THR A 120 1.52 REMARK 500 O ILE A 174 H ASN A 176 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 116 97.93 -47.63 REMARK 500 1 SER A 117 -168.19 -57.52 REMARK 500 1 ASN A 119 -35.28 62.26 REMARK 500 1 VAL A 135 90.31 55.34 REMARK 500 1 PHE A 142 -133.22 -111.91 REMARK 500 1 THR A 146 53.33 -150.00 REMARK 500 1 HIS A 149 -174.62 -67.65 REMARK 500 1 THR A 156 104.74 -164.81 REMARK 500 1 GLU A 158 -26.58 -39.31 REMARK 500 1 SER A 159 81.14 -56.48 REMARK 500 1 PHE A 171 59.79 -177.98 REMARK 500 1 HIS A 172 -159.61 -58.18 REMARK 500 1 ASN A 175 -53.13 64.47 REMARK 500 1 MET A 178 57.69 -113.05 REMARK 500 1 VAL A 179 -166.79 -56.88 REMARK 500 2 SER A 117 -169.40 -52.91 REMARK 500 2 VAL A 118 -153.72 -78.28 REMARK 500 2 ASN A 119 -17.34 64.65 REMARK 500 2 VAL A 135 92.27 44.59 REMARK 500 2 ASP A 143 -162.40 59.31 REMARK 500 2 LYS A 144 -83.21 56.50 REMARK 500 2 THR A 145 15.61 -151.12 REMARK 500 2 HIS A 149 -76.99 -71.30 REMARK 500 2 THR A 156 107.28 -161.94 REMARK 500 2 GLU A 158 -27.69 -39.33 REMARK 500 2 SER A 159 85.91 -55.58 REMARK 500 2 PHE A 171 76.72 -61.16 REMARK 500 2 ASN A 175 -55.32 65.73 REMARK 500 2 ASN A 176 18.74 -158.19 REMARK 500 2 VAL A 179 159.35 -37.96 REMARK 500 3 LEU A 116 97.46 -44.81 REMARK 500 3 SER A 117 171.64 -45.66 REMARK 500 3 ASN A 119 -42.24 65.08 REMARK 500 3 THR A 120 120.91 -38.76 REMARK 500 3 LYS A 134 -38.85 -39.22 REMARK 500 3 VAL A 135 91.55 45.24 REMARK 500 3 ARG A 148 -68.84 -106.38 REMARK 500 3 THR A 156 109.82 -161.26 REMARK 500 3 GLU A 158 -27.91 -39.70 REMARK 500 3 SER A 159 85.95 -55.29 REMARK 500 3 ILE A 169 -29.44 175.08 REMARK 500 3 PHE A 171 57.34 175.89 REMARK 500 3 HIS A 172 -145.84 -61.72 REMARK 500 3 ASN A 175 -55.91 66.56 REMARK 500 3 ASN A 176 21.49 -164.86 REMARK 500 3 MET A 178 43.20 -96.58 REMARK 500 3 VAL A 179 -174.29 -53.98 REMARK 500 4 SER A 117 -170.09 -53.41 REMARK 500 4 VAL A 118 -154.35 -81.28 REMARK 500 4 ASN A 119 -17.96 64.45 REMARK 500 REMARK 500 THIS ENTRY HAS 344 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 148 0.29 SIDE CHAIN REMARK 500 1 ARG A 150 0.31 SIDE CHAIN REMARK 500 2 ARG A 148 0.29 SIDE CHAIN REMARK 500 2 ARG A 150 0.29 SIDE CHAIN REMARK 500 3 ARG A 148 0.21 SIDE CHAIN REMARK 500 3 ARG A 150 0.30 SIDE CHAIN REMARK 500 4 ARG A 148 0.26 SIDE CHAIN REMARK 500 4 ARG A 150 0.31 SIDE CHAIN REMARK 500 5 ARG A 148 0.32 SIDE CHAIN REMARK 500 5 ARG A 150 0.24 SIDE CHAIN REMARK 500 6 ARG A 148 0.32 SIDE CHAIN REMARK 500 6 ARG A 150 0.19 SIDE CHAIN REMARK 500 7 ARG A 148 0.20 SIDE CHAIN REMARK 500 7 ARG A 150 0.18 SIDE CHAIN REMARK 500 8 ARG A 148 0.29 SIDE CHAIN REMARK 500 8 ARG A 150 0.21 SIDE CHAIN REMARK 500 9 ARG A 150 0.13 SIDE CHAIN REMARK 500 10 ARG A 148 0.31 SIDE CHAIN REMARK 500 10 ARG A 150 0.27 SIDE CHAIN REMARK 500 11 ARG A 148 0.32 SIDE CHAIN REMARK 500 11 ARG A 150 0.31 SIDE CHAIN REMARK 500 12 ARG A 150 0.30 SIDE CHAIN REMARK 500 13 ARG A 148 0.31 SIDE CHAIN REMARK 500 13 ARG A 150 0.20 SIDE CHAIN REMARK 500 14 ARG A 148 0.31 SIDE CHAIN REMARK 500 14 ARG A 150 0.25 SIDE CHAIN REMARK 500 15 ARG A 148 0.25 SIDE CHAIN REMARK 500 16 ARG A 148 0.22 SIDE CHAIN REMARK 500 16 ARG A 150 0.28 SIDE CHAIN REMARK 500 17 ARG A 148 0.10 SIDE CHAIN REMARK 500 17 ARG A 150 0.28 SIDE CHAIN REMARK 500 18 ARG A 148 0.26 SIDE CHAIN REMARK 500 18 ARG A 150 0.18 SIDE CHAIN REMARK 500 19 ARG A 148 0.12 SIDE CHAIN REMARK 500 19 ARG A 150 0.20 SIDE CHAIN REMARK 500 20 ARG A 148 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MSS RELATED DB: PDB DBREF 2MST A 110 184 UNP Q61474 MSI1H_MOUSE 110 184 SEQRES 1 A 75 LYS ILE PHE VAL GLY GLY LEU SER VAL ASN THR THR VAL SEQRES 2 A 75 GLU ASP VAL LYS HIS TYR PHE GLU GLN PHE GLY LYS VAL SEQRES 3 A 75 ASP ASP ALA MET LEU MET PHE ASP LYS THR THR ASN ARG SEQRES 4 A 75 HIS ARG GLY PHE GLY PHE VAL THR PHE GLU SER GLU ASP SEQRES 5 A 75 ILE VAL GLU LYS VAL CYS GLU ILE HIS PHE HIS GLU ILE SEQRES 6 A 75 ASN ASN LYS MET VAL GLU CYS LYS LYS ALA HELIX 1 H1 VAL A 122 PHE A 132 5 11 HELIX 2 H2 GLU A 160 CYS A 167 5 8 SHEET 1 S1 1 LYS A 110 GLY A 114 0 SHEET 1 S2 1 VAL A 135 MET A 141 0 SHEET 1 S3 1 PHE A 152 PHE A 157 0 SHEET 1 S4 1 GLU A 180 ALA A 184 0 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000