PDB Short entry for 2MVL HEADER SIGNALING PROTEIN 08-OCT-14 2MVL TITLE SOLUTION STRUCTURE OF CYTOSOLIC PART OF TROP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR-ASSOCIATED CALCIUM SIGNAL TRANSDUCER 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 298-323; COMPND 5 SYNONYM: CELL SURFACE GLYCOPROTEIN TROP-2, MEMBRANE COMPONENT COMPND 6 CHROMOSOME 1 SURFACE MARKER 1, PANCREATIC CARCINOMA MARKER PROTEIN COMPND 7 GA733-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS TROPIC, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.ILC,J.PLAVEC,T.VIDMAR,M.PAVSIC,B.LENARCIC REVDAT 3 14-JUN-23 2MVL 1 REMARK REVDAT 2 18-APR-18 2MVL 1 JRNL REVDAT 1 06-MAY-15 2MVL 0 JRNL AUTH M.PAVSIC,G.ILC,T.VIDMAR,J.PLAVEC,B.LENARCIC JRNL TITL THE CYTOSOLIC TAIL OF THE TUMOR MARKER PROTEIN TROP2--A JRNL TITL 2 STRUCTURAL SWITCH TRIGGERED BY PHOSPHORYLATION. JRNL REF SCI REP V. 5 10324 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 25981199 JRNL DOI 10.1038/SREP10324 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, YASARA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), KRIEGER REMARK 3 (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000104099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM TROPIC, REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 TYR A 306 CB TYR A 306 CG -0.213 REMARK 500 10 TYR A 306 CG TYR A 306 CD1 -0.113 REMARK 500 10 TYR A 306 CD1 TYR A 306 CE1 -0.229 REMARK 500 10 TYR A 306 CE1 TYR A 306 CZ 0.087 REMARK 500 10 TYR A 306 CE2 TYR A 306 CD2 -0.137 REMARK 500 13 GLU A 310 CB GLU A 310 CG -0.160 REMARK 500 18 GLU A 310 CB GLU A 310 CG -0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 300 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 3 ARG A 300 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 4 ARG A 300 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 5 ARG A 300 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 6 ARG A 301 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 300 N - CA - CB ANGL. DEV. = -15.8 DEGREES REMARK 500 8 ARG A 300 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 9 ARG A 300 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 10 ARG A 300 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 10 TYR A 306 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 11 ARG A 300 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 13 ARG A 300 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 16 ARG A 300 N - CA - CB ANGL. DEV. = -11.4 DEGREES REMARK 500 17 SER A 303 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 17 TYR A 306 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 19 ARG A 300 N - CA - CB ANGL. DEV. = -16.2 DEGREES REMARK 500 20 ARG A 300 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ASN A 299 43.44 -146.20 REMARK 500 3 LYS A 302 1.19 -67.59 REMARK 500 4 LYS A 319 111.97 -29.55 REMARK 500 5 ARG A 301 -5.12 -56.19 REMARK 500 5 ARG A 318 -5.01 -58.83 REMARK 500 6 LYS A 319 -160.17 -126.43 REMARK 500 7 LYS A 319 108.04 -29.93 REMARK 500 8 LYS A 319 51.80 31.94 REMARK 500 9 LYS A 312 -60.92 -104.96 REMARK 500 9 LYS A 319 116.65 -38.87 REMARK 500 10 ARG A 301 47.28 -76.45 REMARK 500 10 SER A 322 93.18 -68.12 REMARK 500 11 ARG A 300 -6.69 -58.04 REMARK 500 12 ASN A 299 52.77 31.22 REMARK 500 12 LYS A 312 -61.29 -104.84 REMARK 500 13 LEU A 317 0.59 -50.31 REMARK 500 13 ARG A 318 8.58 -36.77 REMARK 500 14 ASN A 299 21.09 -147.71 REMARK 500 15 LYS A 319 54.74 30.91 REMARK 500 16 LYS A 302 4.46 -68.67 REMARK 500 16 LYS A 319 56.60 8.46 REMARK 500 17 LYS A 302 -76.10 -93.80 REMARK 500 18 ASN A 299 49.55 -96.69 REMARK 500 18 ARG A 301 31.68 -58.24 REMARK 500 18 LYS A 319 92.29 -16.83 REMARK 500 19 GLU A 313 -76.62 -113.04 REMARK 500 19 LYS A 319 -54.87 -19.02 REMARK 500 20 LYS A 319 111.55 58.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 10 TYR A 306 0.15 SIDE CHAIN REMARK 500 17 TYR A 306 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25274 RELATED DB: BMRB DBREF 2MVL A 298 323 UNP P09758 TACD2_HUMAN 298 323 SEQRES 1 A 26 THR ASN ARG ARG LYS SER GLY LYS TYR LYS LYS VAL GLU SEQRES 2 A 26 ILE LYS GLU LEU GLY GLU LEU ARG LYS GLU PRO SER LEU HELIX 1 1 ARG A 300 GLY A 304 5 5 HELIX 2 2 LYS A 305 GLU A 316 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000