PDB Short entry for 2MZ0 HEADER ANTIMICROBIAL PROTEIN 05-FEB-15 2MZ0 TITLE SOLUTION NMR STRUCTURE OF PDFL2.1 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN-LIKE PROTEIN 32; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-81; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G35537, F15O4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETTRX_1A KEYWDS CSALPHABETA MOTIF, DEFENSIN, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.OMIDVAR,H.BOHLMANN,Y.XIA,G.VEGLIA REVDAT 2 14-JUN-23 2MZ0 1 REMARK REVDAT 1 17-FEB-16 2MZ0 0 JRNL AUTH R.OMIDVAR,H.BOHLMANN,Y.XIA,G.VEGLIA JRNL TITL SOLUTION NMR STRUCTURE OF PDFL2.1 FROM ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.37, X-PLOR NIH 2.37 REMARK 3 AUTHORS : SCHWIETERS, C. ET AL. (X-PLOR NIH), SCHWIETERS, C. REMARK 3 ET AL. (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-15. REMARK 100 THE DEPOSITION ID IS D_1000104213. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.16 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PROTEIN, REMARK 210 0.04 MM POTASSIUM CHLORIDE, 0.02 REMARK 210 MM POTASSIUM PHOSPHATE, 1 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HCCH- REMARK 210 TOCSY; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 7.5, SPARKY 3.113, TALOS REMARK 210 3.80F1, TOPSPIN 3.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 14 -12.29 -46.93 REMARK 500 1 PRO A 18 -177.00 -53.08 REMARK 500 1 ALA A 32 32.85 -69.65 REMARK 500 1 LEU A 43 29.62 47.12 REMARK 500 1 LYS A 52 -43.60 -143.52 REMARK 500 2 ASP A 2 -2.73 -55.92 REMARK 500 2 CYS A 14 -5.56 -56.12 REMARK 500 2 PRO A 18 179.33 -53.00 REMARK 500 2 SER A 29 5.80 -69.07 REMARK 500 2 ASN A 30 50.89 71.47 REMARK 500 2 ALA A 32 23.06 -69.17 REMARK 500 2 LEU A 43 27.99 34.65 REMARK 500 2 LYS A 52 -83.51 -57.56 REMARK 500 3 CYS A 14 4.66 -63.63 REMARK 500 3 SER A 29 5.15 -69.49 REMARK 500 3 ASN A 30 54.85 70.86 REMARK 500 3 ALA A 32 28.28 -69.47 REMARK 500 3 LEU A 43 29.41 40.02 REMARK 500 3 LYS A 52 -81.50 -65.54 REMARK 500 4 CYS A 14 6.60 -69.35 REMARK 500 4 PRO A 18 -172.72 -65.95 REMARK 500 4 GLU A 20 -72.20 -47.91 REMARK 500 4 ASN A 30 52.98 74.51 REMARK 500 4 ALA A 32 30.24 -69.79 REMARK 500 4 GLN A 41 36.18 72.61 REMARK 500 4 LYS A 52 -70.02 -93.44 REMARK 500 5 ILE A 3 -0.87 -59.11 REMARK 500 5 PRO A 18 -178.63 -49.64 REMARK 500 5 ASN A 30 14.81 80.90 REMARK 500 5 LEU A 43 29.17 49.56 REMARK 500 6 PRO A 18 165.99 -48.88 REMARK 500 6 SER A 29 1.65 -67.86 REMARK 500 6 GLN A 41 -57.49 -174.63 REMARK 500 6 LEU A 43 28.28 46.88 REMARK 500 7 ILE A 3 -25.99 62.25 REMARK 500 7 PRO A 18 179.87 -47.61 REMARK 500 7 SER A 29 7.15 -68.96 REMARK 500 7 ASN A 30 47.86 72.73 REMARK 500 7 ALA A 32 23.30 -69.32 REMARK 500 7 LYS A 52 -86.00 -41.55 REMARK 500 8 CYS A 14 -2.96 -58.17 REMARK 500 8 GLU A 16 -30.76 -134.51 REMARK 500 8 GLU A 20 -70.72 -52.55 REMARK 500 8 SER A 29 2.36 -67.57 REMARK 500 8 ASN A 30 43.32 75.14 REMARK 500 8 ALA A 32 31.19 -69.48 REMARK 500 8 GLN A 41 30.44 -143.90 REMARK 500 8 LEU A 43 28.37 45.14 REMARK 500 9 CYS A 14 -5.60 -58.60 REMARK 500 9 THR A 19 -70.61 -46.73 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25468 RELATED DB: BMRB DBREF 2MZ0 A 1 55 UNP Q2V4I8 DEF32_ARATH 27 81 SEQRES 1 A 55 LYS ASP ILE ASP GLY ARG LYS PRO LEU LEU ILE GLY THR SEQRES 2 A 55 CYS ILE GLU PHE PRO THR GLU LYS CYS ASN LYS THR CYS SEQRES 3 A 55 ILE GLU SER ASN PHE ALA GLY GLY LYS CYS VAL HIS ILE SEQRES 4 A 55 GLY GLN SER LEU ASP PHE VAL CYS VAL CYS PHE PRO LYS SEQRES 5 A 55 TYR TYR ILE HELIX 1 1 PRO A 18 SER A 29 1 12 SHEET 1 A 3 LEU A 9 THR A 13 0 SHEET 2 A 3 VAL A 46 CYS A 49 -1 O CYS A 49 N LEU A 9 SHEET 3 A 3 GLY A 34 VAL A 37 -1 N VAL A 37 O VAL A 46 SSBOND 1 CYS A 14 CYS A 36 1555 1555 2.02 SSBOND 2 CYS A 22 CYS A 47 1555 1555 2.02 SSBOND 3 CYS A 26 CYS A 49 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000