PDB Short entry for 2N02 HEADER MEMBRANE PROTEIN 04-MAR-15 2N02 TITLE SOLUTION STRUCTURE OF THE A147T VARIANT OF THE MITOCHONDRIAL TITLE 2 TRANSLOCATOR PROTEIN (TSPO) IN COMPLEX WITH PK11195 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLOCATOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BZRP, TSPO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15PBR KEYWDS MEMBRANE PROTEIN, TRANSLOCATOR PROTEIN (TSPO), PROTEIN-LIGAND KEYWDS 2 COMPLEX, MITOCHONDRIA, PK11195, PERIPHERAL BENZODIAZEPINE RECEPTOR, KEYWDS 3 A147T EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.JAREMKO,L.JAREMKO,K.GILLER,S.BECKER,M.ZWECKSTETTER REVDAT 4 14-JUN-23 2N02 1 REMARK SEQADV REVDAT 3 31-JAN-18 2N02 1 JRNL REVDAT 2 15-JUL-15 2N02 1 JRNL REVDAT 1 10-JUN-15 2N02 0 JRNL AUTH M.JAREMKO,M.JAREMKO,K.GILLER,S.BECKER,M.ZWECKSTETTER JRNL TITL STRUCTURAL INTEGRITY OF THE A147T POLYMORPH OF MAMMALIAN JRNL TITL 2 TSPO. JRNL REF CHEMBIOCHEM V. 16 1483 2015 JRNL REFN ISSN 1439-4227 JRNL PMID 25974690 JRNL DOI 10.1002/CBIC.201500217 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA_3.0, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA_3.0) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104251. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 315 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.7 MM [U-100% 13C; U-100% REMARK 210 15N] TRANSLOCATOR PROTEIN A147T, REMARK 210 0.3-0.7 MM [U-100% 13C; U-100% REMARK 210 15N; U-80% 2H] TRANSLOCATOR REMARK 210 PROTEIN A147T, 90% H2O/10% D2O; REMARK 210 0.3-0.7 MM [U-100% 13C; U-100% REMARK 210 15N] TRANSLOCATOR PROTEIN A147T, REMARK 210 0.3-0.7 MM [U-100% 13C; U-100% REMARK 210 15N; U-80% 2H] TRANSLOCATOR REMARK 210 PROTEIN A147T, 90% H2O/10% D2O; REMARK 210 0.3-0.7 MM [U-100% 13C; U-100% REMARK 210 15N] TRANSLOCATOR PROTEIN A147T, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, X-PLOR NIH, NMRDRAW, REMARK 210 CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 105 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 137 H TYR A 140 1.40 REMARK 500 O LEU A 49 H ILE A 52 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 96 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 5 PRO A 96 C - N - CD ANGL. DEV. = -13.8 DEGREES REMARK 500 6 PRO A 96 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 8 PRO A 96 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 10 PRO A 51 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 11 PRO A 96 C - N - CD ANGL. DEV. = -19.2 DEGREES REMARK 500 13 PRO A 96 C - N - CD ANGL. DEV. = -14.6 DEGREES REMARK 500 14 PRO A 96 C - N - CD ANGL. DEV. = -19.7 DEGREES REMARK 500 15 PRO A 96 C - N - CD ANGL. DEV. = -20.2 DEGREES REMARK 500 17 PRO A 96 C - N - CD ANGL. DEV. = -17.2 DEGREES REMARK 500 18 PRO A 96 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 20 PRO A 96 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 102 -3.66 75.53 REMARK 500 1 TYR A 138 -67.33 -2.81 REMARK 500 2 THR A 48 -76.40 -76.79 REMARK 500 2 PRO A 96 81.65 -38.49 REMARK 500 2 ALA A 102 -1.32 59.79 REMARK 500 2 TYR A 138 -72.62 9.91 REMARK 500 3 PRO A 96 82.28 -42.79 REMARK 500 3 ALA A 102 3.53 57.14 REMARK 500 3 TYR A 138 -74.41 9.28 REMARK 500 3 ASN A 158 -60.91 -103.80 REMARK 500 4 PRO A 96 79.68 -40.37 REMARK 500 4 ALA A 102 -2.30 60.98 REMARK 500 4 TYR A 138 -76.20 2.82 REMARK 500 5 THR A 48 -76.18 -74.30 REMARK 500 5 PHE A 74 82.72 -59.30 REMARK 500 5 ALA A 102 -1.00 60.86 REMARK 500 5 TYR A 138 -64.32 -6.20 REMARK 500 5 LEU A 167 -81.50 33.02 REMARK 500 6 THR A 48 -73.00 -75.57 REMARK 500 6 PRO A 96 82.93 -40.96 REMARK 500 6 TYR A 138 -59.99 -26.97 REMARK 500 6 ASN A 158 -60.34 -105.28 REMARK 500 7 THR A 48 -72.43 -77.02 REMARK 500 7 PHE A 74 84.54 -59.61 REMARK 500 7 PRO A 96 80.67 -41.05 REMARK 500 7 TYR A 138 -62.58 0.17 REMARK 500 8 PRO A 96 80.47 -43.35 REMARK 500 8 LEU A 137 12.42 -69.64 REMARK 500 8 ASN A 158 -61.12 -99.61 REMARK 500 9 PHE A 74 80.00 -59.14 REMARK 500 9 ALA A 102 -0.73 57.97 REMARK 500 9 TYR A 138 -63.77 1.83 REMARK 500 9 ASN A 158 -61.84 -104.46 REMARK 500 10 PRO A 96 87.50 -61.15 REMARK 500 10 TRP A 107 -18.27 -44.49 REMARK 500 10 TYR A 138 -53.57 -24.55 REMARK 500 11 PRO A 81 -71.93 -89.64 REMARK 500 11 PRO A 96 85.59 -45.21 REMARK 500 11 TRP A 107 -16.74 -45.31 REMARK 500 11 ALA A 108 -23.49 -39.46 REMARK 500 11 LEU A 137 13.25 -65.06 REMARK 500 12 ALA A 102 -1.93 61.19 REMARK 500 12 TYR A 138 -58.75 -25.30 REMARK 500 13 ALA A 102 -1.92 60.09 REMARK 500 13 TYR A 138 -65.43 4.42 REMARK 500 14 PHE A 74 80.43 -59.08 REMARK 500 14 TRP A 95 -70.92 -54.99 REMARK 500 14 PRO A 96 82.16 -43.32 REMARK 500 14 ALA A 108 -19.14 -39.39 REMARK 500 14 TYR A 138 -68.74 8.56 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PKA A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MGY RELATED DB: PDB REMARK 900 RELATED ID: 25513 RELATED DB: BMRB DBREF 2N02 A 1 169 UNP Q99M32 Q99M32_MOUSE 1 169 SEQADV 2N02 THR A 147 UNP Q99M32 ALA 147 ENGINEERED MUTATION SEQRES 1 A 169 MET PRO GLU SER TRP VAL PRO ALA VAL GLY LEU THR LEU SEQRES 2 A 169 VAL PRO SER LEU GLY GLY PHE MET GLY ALA TYR PHE VAL SEQRES 3 A 169 ARG GLY GLU GLY LEU ARG TRP TYR ALA GLY LEU GLN LYS SEQRES 4 A 169 PRO SER TRP HIS PRO PRO ARG TRP THR LEU ALA PRO ILE SEQRES 5 A 169 TRP GLY THR LEU TYR SER ALA MET GLY TYR GLY SER TYR SEQRES 6 A 169 ILE VAL TRP LYS GLU LEU GLY GLY PHE THR GLU ASP ALA SEQRES 7 A 169 MET VAL PRO LEU GLY LEU TYR THR GLY GLN LEU ALA LEU SEQRES 8 A 169 ASN TRP ALA TRP PRO PRO ILE PHE PHE GLY ALA ARG GLN SEQRES 9 A 169 MET GLY TRP ALA LEU ALA ASP LEU LEU LEU VAL SER GLY SEQRES 10 A 169 VAL ALA THR ALA THR THR LEU ALA TRP HIS ARG VAL SER SEQRES 11 A 169 PRO PRO ALA ALA ARG LEU LEU TYR PRO TYR LEU ALA TRP SEQRES 12 A 169 LEU ALA PHE THR THR VAL LEU ASN TYR TYR VAL TRP ARG SEQRES 13 A 169 ASP ASN SER GLY ARG ARG GLY GLY SER ARG LEU ALA GLU HET PKA A 201 46 HETNAM PKA N-[(2R)-BUTAN-2-YL]-1-(2-CHLOROPHENYL)-N- HETNAM 2 PKA METHYLISOQUINOLINE-3-CARBOXAMIDE FORMUL 2 PKA C21 H21 CL N2 O HELIX 1 1 TRP A 5 VAL A 26 1 22 HELIX 2 2 PRO A 45 ALA A 50 1 6 HELIX 3 3 PRO A 51 GLY A 72 1 22 HELIX 4 4 THR A 75 ALA A 94 1 20 HELIX 5 5 TRP A 95 PHE A 99 5 5 HELIX 6 6 GLN A 104 TRP A 107 5 4 HELIX 7 7 ALA A 108 TRP A 126 1 19 HELIX 8 8 SER A 130 TYR A 138 1 9 HELIX 9 9 TYR A 140 SER A 159 1 20 SITE 1 AC1 13 GLY A 19 GLY A 22 ALA A 23 LYS A 39 SITE 2 AC1 13 HIS A 43 ARG A 46 LEU A 49 ILE A 52 SITE 3 AC1 13 TRP A 53 TRP A 107 ALA A 110 TRP A 143 SITE 4 AC1 13 ASN A 151 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000