PDB Short entry for 2N03 HEADER STRUCTURAL PROTEIN 04-MAR-15 2N03 TITLE SOLUTION NMR STRUCTURE PLECTIN REPEAT DOMAIN 6 (4403-4606) OF PLECTIN TITLE 2 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TITLE 3 TARGET HR6354E COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 4403-4606; COMPND 5 SYNONYM: PCN, PLTN, HEMIDESMOSOMAL PROTEIN 1, HD1, PLECTIN-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEC, PLEC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS CYTOSKELETAL-LINKER PROTEIN, PSI-BIOLOGY, NESG, STRUCTURAL PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.PULAVARTI,A.ELETSKY,Y.HUANG,H.JANJUA,R.XIAO,T.ACTON,J.EVERETT, AUTHOR 2 G.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 2 14-JUN-23 2N03 1 REMARK SEQADV REVDAT 1 13-MAY-15 2N03 0 JRNL AUTH S.PULAVARTI,A.ELETSKY,Y.HUANG,H.JANJUA,R.XIAO,T.ACTON, JRNL AUTH 2 J.EVERETT,G.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE PLECTIN REPEAT DOMAIN 6 (4403-4606) JRNL TITL 2 OF PLECTIN FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM (NESG) TARGET HR6354E JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, ROSETTA, CYANA REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE (AUTOASSIGN), REMARK 3 (ROSETTA) -BAKER DAVID (ROSETTA), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000104252. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N; U REMARK 210 -2H; ILV-1H] PROTEIN, 20 MM MES, REMARK 210 100 MM NACL, 5 MM CACL2, 10 MM REMARK 210 DTT, 0.02 MM NAN3, 50 UM DSS, 1 REMARK 210 RATIO PROTEASE INHIBITOR, 90/10 % REMARK 210 H2O/D2O, 90% H2O/10% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 20 MM MES, 100 MM NACL, 5 MM REMARK 210 CACL2, 10 MM DTT, 0.02 MM NAN3, REMARK 210 50 UM DSS, 1 RATIO PROTEASE REMARK 210 INHIBITOR, 90/10 % H2O/D2O, 90% REMARK 210 H2O/10% D2O; 1 MM [U-5% 13C; U- REMARK 210 100% 15N] PROTEIN, 20 MM MES, REMARK 210 100 MM NACL, 5 MM CACL2, 10 MM REMARK 210 DTT, 0.02 MM NAN3, 50 UM DSS, 1 REMARK 210 RATIO PROTEASE INHIBITOR, 90/10 % REMARK 210 H2O/D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D TROSY-HNCO; 3D REMARK 210 TROSY-HNCA; 3D TROSY-HN(CO)CA; REMARK 210 3D TROSY-HNCACB; 3D HMCM[CG]CBCA; REMARK 210 3D HMCMCBCA; 3D [H]-NOESY-[NH/ REMARK 210 CH] ( MIX= 250 MS); 3D [(H)C]- REMARK 210 NOESY-[CH], ( MIX = 250 MS); 3D REMARK 210 (H)CCH-COSY, ALIPHATIC; 3D (H) REMARK 210 CCH-TOCSY, ALIPHATIC; 3D [H]- REMARK 210 NOESY-[NH/CH] ( MIX = 70 MS) #; REMARK 210 2D CT [13C,1H] HSQC (CT DELAY 28 REMARK 210 MS); 2D CT [13C,1H] HSQC (CT REMARK 210 DELAY 42 MS); 2D CT [13C,1H] REMARK 210 HSQC (CT DELAY 56 MS) REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DDR2; AMX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TALOS, CARA, PROSA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 PRO A4575 CD PRO A4575 N 0.134 REMARK 500 17 PRO A4410 CD PRO A4410 N 0.111 REMARK 500 17 PRO A4575 CD PRO A4575 N 0.117 REMARK 500 20 PRO A4410 CD PRO A4410 N 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A4394 -101.38 -103.86 REMARK 500 1 HIS A4395 -60.77 -100.50 REMARK 500 1 HIS A4397 -73.53 -101.34 REMARK 500 1 HIS A4398 -164.37 -104.47 REMARK 500 1 SER A4400 -74.30 -136.71 REMARK 500 1 ALA A4405 -64.00 -135.05 REMARK 500 1 ASP A4409 85.06 68.08 REMARK 500 1 PRO A4410 171.40 -56.20 REMARK 500 1 ARG A4437 -76.56 -80.78 REMARK 500 1 ASN A4438 25.39 169.24 REMARK 500 1 THR A4455 35.02 -93.54 REMARK 500 1 SER A4462 -47.97 175.63 REMARK 500 1 THR A4463 25.02 -174.35 REMARK 500 1 LYS A4475 54.30 -158.95 REMARK 500 1 LEU A4477 38.30 -142.00 REMARK 500 1 CYS A4494 85.50 -175.35 REMARK 500 1 ARG A4500 -54.80 -165.08 REMARK 500 1 LYS A4504 78.88 49.90 REMARK 500 1 LEU A4516 -95.01 -95.53 REMARK 500 1 TYR A4517 125.90 -177.56 REMARK 500 1 ASP A4538 -55.06 76.73 REMARK 500 1 ASP A4564 74.60 -103.80 REMARK 500 1 TYR A4571 -30.86 -130.33 REMARK 500 1 THR A4577 -25.27 175.67 REMARK 500 1 LYS A4578 -37.72 172.99 REMARK 500 1 LEU A4579 -58.33 71.64 REMARK 500 1 GLU A4594 -56.98 -156.32 REMARK 500 1 LEU A4598 -164.89 52.69 REMARK 500 1 ALA A4605 -80.15 72.60 REMARK 500 2 HIS A4394 -138.40 -147.86 REMARK 500 2 HIS A4397 84.96 165.50 REMARK 500 2 HIS A4398 156.04 175.86 REMARK 500 2 HIS A4399 38.96 -96.05 REMARK 500 2 PRO A4410 -179.54 -63.91 REMARK 500 2 THR A4414 -129.87 44.87 REMARK 500 2 ARG A4437 30.87 175.24 REMARK 500 2 LEU A4439 -14.11 -166.76 REMARK 500 2 SER A4462 -47.79 175.10 REMARK 500 2 THR A4463 25.37 -175.20 REMARK 500 2 LYS A4475 55.43 -159.93 REMARK 500 2 ARG A4500 -34.76 175.00 REMARK 500 2 LYS A4504 126.10 66.60 REMARK 500 2 ASP A4538 -70.05 -74.04 REMARK 500 2 PRO A4540 79.95 -66.24 REMARK 500 2 TYR A4571 54.93 -177.22 REMARK 500 2 CYS A4574 -48.92 -162.35 REMARK 500 2 LEU A4579 -76.71 53.46 REMARK 500 2 LEU A4598 -158.10 48.91 REMARK 500 2 ALA A4605 -81.19 74.60 REMARK 500 3 HIS A4395 172.77 177.84 REMARK 500 REMARK 500 THIS ENTRY HAS 431 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 4392 GLY A 4393 10 -148.12 REMARK 500 GLY A 4476 LEU A 4477 10 -147.29 REMARK 500 MET A 4392 GLY A 4393 16 143.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19753 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-HR6354E RELATED DB: TARGETTRACK DBREF 2N03 A 4403 4606 UNP Q15149 PLEC_HUMAN 4403 4606 SEQADV 2N03 MET A 4392 UNP Q15149 EXPRESSION TAG SEQADV 2N03 GLY A 4393 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4394 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4395 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4396 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4397 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4398 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4399 UNP Q15149 EXPRESSION TAG SEQADV 2N03 SER A 4400 UNP Q15149 EXPRESSION TAG SEQADV 2N03 HIS A 4401 UNP Q15149 EXPRESSION TAG SEQADV 2N03 MET A 4402 UNP Q15149 EXPRESSION TAG SEQRES 1 A 215 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET GLN LEU SEQRES 2 A 215 ALA SER TRP SER ASP PRO THR GLU GLU THR GLY PRO VAL SEQRES 3 A 215 ALA GLY ILE LEU ASP THR GLU THR LEU GLU LYS VAL SER SEQRES 4 A 215 ILE THR GLU ALA MET HIS ARG ASN LEU VAL ASP ASN ILE SEQRES 5 A 215 THR GLY GLN ARG LEU LEU GLU ALA GLN ALA CYS THR GLY SEQRES 6 A 215 GLY ILE ILE ASP PRO SER THR GLY GLU ARG PHE PRO VAL SEQRES 7 A 215 THR ASP ALA VAL ASN LYS GLY LEU VAL ASP LYS ILE MET SEQRES 8 A 215 VAL ASP ARG ILE ASN LEU ALA GLN LYS ALA PHE CYS GLY SEQRES 9 A 215 PHE GLU ASP PRO ARG THR LYS THR LYS MET SER ALA ALA SEQRES 10 A 215 GLN ALA LEU LYS LYS GLY TRP LEU TYR TYR GLU ALA GLY SEQRES 11 A 215 GLN ARG PHE LEU GLU VAL GLN TYR LEU THR GLY GLY LEU SEQRES 12 A 215 ILE GLU PRO ASP THR PRO GLY ARG VAL PRO LEU ASP GLU SEQRES 13 A 215 ALA LEU GLN ARG GLY THR VAL ASP ALA ARG THR ALA GLN SEQRES 14 A 215 LYS LEU ARG ASP VAL GLY ALA TYR SER LYS TYR LEU THR SEQRES 15 A 215 CYS PRO LYS THR LYS LEU LYS ILE SER TYR LYS ASP ALA SEQRES 16 A 215 LEU ASP ARG SER MET VAL GLU GLU GLY THR GLY LEU ARG SEQRES 17 A 215 LEU LEU GLU ALA ALA ALA GLN HELIX 1 1 SER A 4430 ASN A 4438 1 9 HELIX 2 2 ASP A 4441 THR A 4455 1 15 HELIX 3 3 PRO A 4468 GLY A 4476 1 9 HELIX 4 4 ASP A 4479 ILE A 4481 5 3 HELIX 5 5 MET A 4482 GLY A 4495 1 14 HELIX 6 6 SER A 4506 GLY A 4514 1 9 HELIX 7 7 TYR A 4517 GLY A 4532 1 16 HELIX 8 8 PRO A 4544 GLY A 4552 1 9 HELIX 9 9 ASP A 4555 ASP A 4564 1 10 HELIX 10 10 VAL A 4565 TYR A 4568 5 4 HELIX 11 11 SER A 4582 SER A 4590 1 9 SHEET 1 A 4 LYS A4428 VAL A4429 0 SHEET 2 A 4 VAL A4417 ASP A4422 -1 N ILE A4420 O VAL A4429 SHEET 3 A 4 ARG A4599 ALA A4603 1 O LEU A4601 N LEU A4421 SHEET 4 A 4 MET A4591 VAL A4592 -1 N MET A4591 O LEU A4600 SHEET 1 B 2 LEU A4534 ILE A4535 0 SHEET 2 B 2 ARG A4542 VAL A4543 -1 O VAL A4543 N LEU A4534 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000