PDB Short entry for 2N42 HEADER SIGNALING PROTEIN 16-JUN-15 2N42 TITLE EC-NMR STRUCTURE OF HUMAN H-RAST35S MUTANT PROTEIN DETERMINED BY TITLE 2 COMBINING EVOLUTIONARY COUPLINGS (EC) AND SPARSE NMR DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P KEYWDS EC-NMR, SIGNALING PROTEIN, STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, NESG, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.MARKS,G.T.MONTELIONE,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2N42 1 REMARK SEQADV REVDAT 3 12-AUG-15 2N42 1 JRNL REVDAT 2 22-JUL-15 2N42 1 JRNL REVDAT 1 01-JUL-15 2N42 0 JRNL AUTH Y.TANG,Y.J.HUANG,T.A.HOPF,C.SANDER,D.S.MARKS,G.T.MONTELIONE JRNL TITL PROTEIN STRUCTURE DETERMINATION BY COMBINING SPARSE NMR DATA JRNL TITL 2 WITH EVOLUTIONARY COUPLINGS. JRNL REF NAT.METHODS V. 12 751 2015 JRNL REFN ISSN 1548-7091 JRNL PMID 26121406 JRNL DOI 10.1038/NMETH.3455 REMARK 0 REMARK 0 THIS ENTRY 2N42 REFLECTS AN ALTERNATIVE MODELING OF THE ORIGINAL REMARK 0 STRUCTURAL DATA IN 2LCF DETERMINED BY AUTHORS: M.ARAKI,F.SHIMA, REMARK 0 Y.YOSHIKAWA,S.MURAOKA,Y.IJIRI,Y.NAGAHARA,T.SHIRONO,T.KATAOKA, REMARK 0 A.TAMURA REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 2LCF REMARK 0 AUTH M.ARAKI,F.SHIMA,Y.YOSHIKAWA,S.MURAOKA,Y.IJIRI,Y.NAGAHARA, REMARK 0 AUTH 2 T.SHIRONO,T.KATAOKA,A.TAMURA REMARK 0 TITL SOLUTION STRUCTURE OF THE STATE 1 CONFORMER OF GTP-BOUND REMARK 0 TITL 2 H-RAS PROTEIN AND DISTINCT DYNAMIC PROPERTIES BETWEEN THE REMARK 0 TITL 3 STATE 1 AND STATE 2 CONFORMERS. REMARK 0 REF J.BIOL.CHEM. V. 286 39644 2011 REMARK 0 REFN ISSN 0021-9258 REMARK 0 PMID 21930707 REMARK 0 DOI 10.1074/JBC.M111.227074 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EVFOLD-PLM, ROSETTA, REDUCE REMARK 3 AUTHORS : BAKER, D. ET AL. (ROSETTA), RICHARDSON, J. & REMARK 3 RICHARDSON, D. (REDUCE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROTONS FROM THE ROSETTA MODELS WERE REMARK 3 REMOVED AND ADDED BACK USING REDUCE. REMARK 4 REMARK 4 2N42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-15. REMARK 100 THE DEPOSITION ID IS D_1000104395. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ASDP (EC-NMR), CYANA, TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: AUTHORS USED THE CS AND NOE DISTANCE RESTRAINT DATA FROM REMARK 210 ENTRY 2LCF. NOESY PEAK LISTS WERE BACK-CALCULATED FROM THE REMARK 210 EXPERIMENTAL NMR CONSTRAINT LIST (2LCF) AND CHEMICAL SHIFT DATA REMARK 210 (BMRB ID 17610). REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 LEU A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 148 -44.95 -138.03 REMARK 500 2 VAL A 14 -69.63 -97.47 REMARK 500 2 SER A 106 77.96 -118.98 REMARK 500 2 GLU A 126 151.83 -48.56 REMARK 500 2 THR A 148 -44.94 -139.78 REMARK 500 3 VAL A 14 -77.98 -95.01 REMARK 500 3 THR A 148 -44.83 -138.91 REMARK 500 4 VAL A 14 -71.64 -96.40 REMARK 500 4 GLU A 31 108.00 -57.90 REMARK 500 4 ARG A 68 -61.02 -93.57 REMARK 500 4 THR A 124 -168.34 -78.52 REMARK 500 4 VAL A 125 152.60 -48.60 REMARK 500 4 THR A 148 -44.19 -138.17 REMARK 500 5 VAL A 14 -79.04 -94.98 REMARK 500 5 ASP A 30 24.94 -147.30 REMARK 500 5 GLU A 37 38.46 -96.82 REMARK 500 5 THR A 148 -44.88 -142.24 REMARK 500 6 VAL A 14 -84.95 -75.68 REMARK 500 6 ASP A 30 24.97 -145.07 REMARK 500 6 TYR A 64 77.73 -111.38 REMARK 500 6 THR A 148 -44.96 -144.77 REMARK 500 7 VAL A 14 -84.97 -75.03 REMARK 500 7 ASP A 30 23.61 -145.07 REMARK 500 7 GLU A 31 40.02 -109.12 REMARK 500 7 LYS A 147 -68.73 -94.92 REMARK 500 7 THR A 148 -38.04 -138.66 REMARK 500 8 GLU A 37 109.81 -48.93 REMARK 500 8 TYR A 64 125.03 -27.10 REMARK 500 8 ALA A 121 85.06 49.53 REMARK 500 9 GLU A 63 33.94 -99.96 REMARK 500 9 TYR A 64 108.48 -20.90 REMARK 500 9 ALA A 121 84.08 54.96 REMARK 500 10 VAL A 14 -63.79 -104.74 REMARK 500 10 TYR A 64 77.93 -109.96 REMARK 500 10 SER A 106 145.07 -176.70 REMARK 500 11 VAL A 14 -70.86 -101.79 REMARK 500 11 ASN A 26 36.82 80.04 REMARK 500 11 SER A 106 147.04 -179.10 REMARK 500 12 VAL A 14 -65.96 -92.13 REMARK 500 12 SER A 106 143.06 -174.98 REMARK 500 13 ALA A 59 141.14 -170.30 REMARK 500 13 GLU A 63 -60.06 -109.39 REMARK 500 14 ASN A 26 40.62 70.11 REMARK 500 14 GLU A 37 108.63 -54.97 REMARK 500 14 GLU A 126 150.65 -47.01 REMARK 500 15 SER A 35 77.94 -63.30 REMARK 500 15 GLU A 37 103.89 -56.29 REMARK 500 15 ARG A 68 -62.37 -91.18 REMARK 500 16 SER A 35 76.76 -64.28 REMARK 500 16 GLU A 37 99.98 -58.10 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17610 RELATED DB: BMRB REMARK 900 RELATED ID: 2LCF RELATED DB: PDB REMARK 900 RELATED ID: 2N44 RELATED DB: PDB REMARK 900 RELATED ID: 2N45 RELATED DB: PDB REMARK 900 RELATED ID: 2N46 RELATED DB: PDB REMARK 900 RELATED ID: 2N47 RELATED DB: PDB REMARK 900 RELATED ID: 2N48 RELATED DB: PDB REMARK 900 RELATED ID: 2N49 RELATED DB: PDB REMARK 900 RELATED ID: 2N4A RELATED DB: PDB REMARK 900 RELATED ID: 2N4B RELATED DB: PDB REMARK 900 RELATED ID: 2N4C RELATED DB: PDB REMARK 900 RELATED ID: 2N4D RELATED DB: PDB REMARK 900 RELATED ID: 2N4F RELATED DB: PDB REMARK 900 RELATED ID: NESG-HR9664 RELATED DB: TARGETTRACK DBREF 2N42 A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 2N42 GLY A -5 UNP P01112 EXPRESSION TAG SEQADV 2N42 PRO A -4 UNP P01112 EXPRESSION TAG SEQADV 2N42 LEU A -3 UNP P01112 EXPRESSION TAG SEQADV 2N42 GLY A -2 UNP P01112 EXPRESSION TAG SEQADV 2N42 SER A -1 UNP P01112 EXPRESSION TAG SEQADV 2N42 ASP A 0 UNP P01112 EXPRESSION TAG SEQADV 2N42 SER A 35 UNP P01112 THR 35 ENGINEERED MUTATION SEQRES 1 A 172 GLY PRO LEU GLY SER ASP MET THR GLU TYR LYS LEU VAL SEQRES 2 A 172 VAL VAL GLY ALA GLY GLY VAL GLY LYS SER ALA LEU THR SEQRES 3 A 172 ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP SEQRES 4 A 172 PRO SER ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE SEQRES 5 A 172 ASP GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA SEQRES 6 A 172 GLY GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET SEQRES 7 A 172 ARG THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN SEQRES 8 A 172 ASN THR LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU SEQRES 9 A 172 GLN ILE LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET SEQRES 10 A 172 VAL LEU VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR SEQRES 11 A 172 VAL GLU SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR SEQRES 12 A 172 GLY ILE PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN SEQRES 13 A 172 GLY VAL GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE SEQRES 14 A 172 ARG GLN HIS HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 SER A 65 GLY A 75 1 11 HELIX 3 3 LYS A 88 LYS A 104 1 17 HELIX 4 4 ASP A 105 ASP A 107 5 3 HELIX 5 5 GLU A 126 TYR A 137 1 12 HELIX 6 6 GLY A 151 HIS A 166 1 16 SHEET 1 A 6 TYR A 40 ILE A 46 0 SHEET 2 A 6 GLU A 49 LEU A 56 -1 O CYS A 51 N VAL A 44 SHEET 3 A 6 GLU A 3 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 A 6 PHE A 78 PHE A 82 1 O LEU A 79 N VAL A 9 SHEET 5 A 6 MET A 111 GLY A 115 1 O VAL A 114 N CYS A 80 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000