PDB Short entry for 2N7O HEADER DE NOVO PROTEIN 16-SEP-15 2N7O TITLE NMR STRUCTURE OF PEPTIDE PG-990 IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE PG-990; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.CAROTENUTO,F.MERLINO,M.CHAI,D.BRANCACCIO,A.YOUSIF,E.NOVELLINO, AUTHOR 2 V.HRUBY,P.GRIECO REVDAT 3 11-OCT-17 2N7O 1 SOURCE REVDAT 2 06-JAN-16 2N7O 1 JRNL REVDAT 1 16-DEC-15 2N7O 0 JRNL AUTH A.CAROTENUTO,F.MERLINO,M.CAI,D.BRANCACCIO,A.M.YOUSIF, JRNL AUTH 2 E.NOVELLINO,V.J.HRUBY,P.GRIECO JRNL TITL DISCOVERY OF NOVEL POTENT AND SELECTIVE AGONISTS AT THE JRNL TITL 2 MELANOCORTIN-3 RECEPTOR. JRNL REF J.MED.CHEM. V. 58 9773 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26599352 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01285 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-15. REMARK 100 THE DEPOSITION ID IS D_1000104525. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM PG, 200 MM [U-2H] DPC, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 2 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 3 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 6 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 6 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 9 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 10 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 4J2 A 8 56.50 125.56 REMARK 500 2 4J2 A 8 52.01 127.39 REMARK 500 4 4J2 A 8 55.61 130.65 REMARK 500 5 PRO A 7 57.98 -92.23 REMARK 500 6 4J2 A 8 53.53 132.18 REMARK 500 7 4J2 A 8 54.64 133.89 REMARK 500 8 4J2 A 8 64.37 103.86 REMARK 500 9 4J2 A 8 54.12 125.87 REMARK 500 10 PRO A 7 45.81 -91.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25814 RELATED DB: BMRB REMARK 900 RELATED ID: 2N7N RELATED DB: PDB DBREF 2N7O A 3 12 PDB 2N7O 2N7O 3 12 SEQRES 1 A 10 ACE NLE ASP PRO PRO 4J2 ARG TRP LYS NH2 MODRES 2N7O NLE A 4 LEU NORLEUCINE HET ACE A 3 6 HET NLE A 4 19 HET 4J2 A 8 26 HET NH2 A 12 3 HETNAM ACE ACETYL GROUP HETNAM NLE NORLEUCINE HETNAM 4J2 (2R)-2-AMINO-3-(NAPHTHALEN-2-YL)PROPANOIC ACID HETNAM NH2 AMINO GROUP FORMUL 1 ACE C2 H4 O FORMUL 1 NLE C6 H13 N O2 FORMUL 1 4J2 C13 H13 N O2 FORMUL 1 NH2 H2 N LINK C ACE A 3 N NLE A 4 1555 1555 1.34 LINK C NLE A 4 N ASP A 5 1555 1555 1.34 LINK C LYS A 11 N NH2 A 12 1555 1555 1.32 LINK C 4J2 A 8 N ARG A 9 1555 1555 1.35 LINK C PRO A 7 N 4J2 A 8 1555 1555 1.34 LINK CG ASP A 5 NZ LYS A 11 1555 1555 1.34 CISPEP 1 PRO A 6 PRO A 7 1 12.39 CISPEP 2 PRO A 6 PRO A 7 2 9.42 CISPEP 3 PRO A 6 PRO A 7 3 6.11 CISPEP 4 PRO A 6 PRO A 7 4 11.69 CISPEP 5 PRO A 6 PRO A 7 5 6.62 CISPEP 6 PRO A 6 PRO A 7 6 0.07 CISPEP 7 PRO A 6 PRO A 7 7 9.11 CISPEP 8 PRO A 6 PRO A 7 8 6.02 CISPEP 9 PRO A 6 PRO A 7 9 4.47 CISPEP 10 PRO A 6 PRO A 7 10 10.96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000