PDB Short entry for 2N85 HEADER TOXIN 05-OCT-15 2N85 TITLE NMR STRUCTURE OF OTTX1A - AMP IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIDERINE-1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 59-99; COMPND 5 SYNONYM: OTTX1A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: OXYOPES TAKOBIUS; SOURCE 4 ORGANISM_COMMON: LYNX SPIDER; SOURCE 5 ORGANISM_TAXID: 666126 KEYWDS SPIDER VENOM, N-TERMINAL END, DPC MICELLES, TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NADEZHDIN,D.ROMANOVSKAYA,M.SACHKOVA,A.VASSILEVSKI,E.GRISHIN, AUTHOR 2 S.KOVALCHUK,A.ARSENIEV REVDAT 3 14-JUN-23 2N85 1 REMARK REVDAT 2 17-APR-19 2N85 1 JRNL REMARK REVDAT 1 05-OCT-16 2N85 0 JRNL AUTH K.D.NADEZHDIN,D.D.ROMANOVSKAIA,M.Y.SACHKOVA,P.B.OPARIN, JRNL AUTH 2 S.I.KOVALCHUK,E.V.GRISHIN,A.S.ARSENIEV,A.A.VASSILEVSKI JRNL TITL MODULAR TOXIN FROM THE LYNX SPIDER OXYOPES TAKOBIUS: JRNL TITL 2 STRUCTURE OF SPIDERINE DOMAINS IN SOLUTION AND JRNL TITL 3 MEMBRANE-MIMICKING ENVIRONMENT. JRNL REF PROTEIN SCI. V. 26 611 2017 JRNL REFN ESSN 1469-896X JRNL PMID 27997708 JRNL DOI 10.1002/PRO.3101 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MOLMOL, CYANA REMARK 3 AUTHORS : KORADI, BILLETER AND WUTHRICH (MOLMOL), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-15. REMARK 100 THE DEPOSITION ID IS D_1000104542. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 3.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM PROTEIN, 60 MM DPC, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA, TALOS, TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 24 -169.08 -69.26 REMARK 500 2 ASN A 24 105.53 -53.27 REMARK 500 3 ASN A 24 -173.65 -63.70 REMARK 500 5 LYS A 23 31.79 -142.84 REMARK 500 6 PHE A 2 104.47 62.92 REMARK 500 6 LYS A 23 33.36 -99.58 REMARK 500 6 ASN A 40 39.78 -143.01 REMARK 500 7 ASN A 24 106.13 -59.86 REMARK 500 9 ASN A 24 99.81 -60.08 REMARK 500 10 ASN A 24 -168.88 -61.82 REMARK 500 14 PHE A 2 99.77 61.20 REMARK 500 14 LYS A 23 -75.10 -67.48 REMARK 500 16 ASN A 24 -169.16 -67.16 REMARK 500 17 LYS A 23 -75.12 -68.57 REMARK 500 18 LYS A 23 -76.70 -52.31 REMARK 500 18 ASN A 24 19.93 -144.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25835 RELATED DB: BMRB REMARK 900 RELATED ID: 2N86 RELATED DB: PDB DBREF 2N85 A 1 41 UNP P86716 SPN1A_OXYTA 59 99 SEQRES 1 A 41 LYS PHE LYS TRP GLY LYS LEU PHE SER THR ALA LYS LYS SEQRES 2 A 41 LEU TYR LYS LYS GLY LYS LYS LEU SER LYS ASN LYS ASN SEQRES 3 A 41 PHE LYS LYS ALA LEU LYS PHE GLY LYS GLN LEU ALA LYS SEQRES 4 A 41 ASN LEU HELIX 1 1 LYS A 3 ASN A 24 1 22 HELIX 2 2 LYS A 25 ASN A 40 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000