PDB Short entry for 2N8Z HEADER CALCIUM BINDING PROTEIN 28-OCT-15 2N8Z TITLE APO FORM OF CALMODULIN-LIKE DOMAIN OF HUMAN NON-MUSCLE ALPHA-ACTININ 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACTININ-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EF-HAND DOMAINS 1 AND 2, RESIDUES 743-892; COMPND 5 SYNONYM: ALPHA-ACTININ CYTOSKELETAL ISOFORM, F-ACTIN CROSS-LINKING COMPND 6 PROTEIN, NON-MUSCLE ALPHA-ACTININ-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACTN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-3D KEYWDS CALCIUM BINDING PROTEIN, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.DRMOTA PREBIL,U.SLAPSAK,E.DE ALMEIDA RIBEIRO,M.PAVSIC,G.ILC, AUTHOR 2 K.ZIELINSKA,M.HARTL,L.BACKMAN,J.PLAVEC,B.LENARCIC,K.DJINOVIC-CARUGO REVDAT 2 14-JUN-23 2N8Z 1 REMARK SEQADV REVDAT 1 29-JUN-16 2N8Z 0 JRNL AUTH S.DRMOTA PREBIL,U.SLAPSAK,M.PAVSIC,G.ILC,V.PUZ, JRNL AUTH 2 E.DE ALMEIDA RIBEIRO,D.ANRATHER,M.HARTL,L.BACKMAN,J.PLAVEC, JRNL AUTH 3 B.LENARCIC,K.DJINOVIC-CARUGO JRNL TITL STRUCTURE AND CALCIUM-BINDING STUDIES OF CALMODULIN-LIKE JRNL TITL 2 DOMAIN OF HUMAN NON-MUSCLE ALPHA-ACTININ-1. JRNL REF SCI REP V. 6 27383 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27272015 JRNL DOI 10.1038/SREP27383 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, YASARA, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 KRIEGER, KORAIMANN, VRIEND (YASARA), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-15. REMARK 100 THE DEPOSITION ID IS D_1000104572. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 CALMODULIN-LIKE DOMAIN OF ALPHA- REMARK 210 ACTININ 1, 20 MM HEPES, 100 MM REMARK 210 SODIUM CHLORIDE, 1.5 MM DTT, REMARK 210 0.05 MM EGTA, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, TALOS + REMARK 210 METHOD USED : SIMULATED ANNEALING, WATER REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 ARG A 794 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 794 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 760 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 794 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 794 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 LEU A 804 CD1 - CG - CD2 ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 781 47.91 -81.72 REMARK 500 1 ASP A 800 67.32 -150.81 REMARK 500 1 PRO A 854 -161.20 -77.08 REMARK 500 2 ASP A 800 68.53 -154.08 REMARK 500 2 ALA A 821 -70.66 -61.86 REMARK 500 2 PRO A 854 -166.74 -77.03 REMARK 500 3 ASP A 781 49.76 -85.78 REMARK 500 3 ASP A 800 65.10 -150.19 REMARK 500 3 THR A 823 18.29 -162.39 REMARK 500 3 LYS A 840 -162.65 -129.82 REMARK 500 3 PRO A 854 -162.62 -77.54 REMARK 500 4 ASP A 781 48.74 -85.08 REMARK 500 4 ASP A 800 68.71 -153.04 REMARK 500 4 LYS A 840 -156.94 -132.60 REMARK 500 4 PRO A 854 -165.03 -75.71 REMARK 500 4 SER A 890 43.11 -158.31 REMARK 500 5 ASP A 781 46.90 -83.97 REMARK 500 5 ILE A 782 71.23 -118.56 REMARK 500 5 ASP A 800 68.15 -154.14 REMARK 500 5 PRO A 854 -167.29 -77.07 REMARK 500 5 PRO A 874 0.98 -60.44 REMARK 500 6 ASP A 781 49.86 -84.93 REMARK 500 6 ASP A 800 65.20 -150.63 REMARK 500 6 ALA A 821 14.32 59.27 REMARK 500 6 ASP A 822 32.76 -98.87 REMARK 500 6 LYS A 840 -157.00 -137.21 REMARK 500 6 PRO A 854 -167.79 -78.43 REMARK 500 6 PRO A 874 3.03 -69.50 REMARK 500 7 ASP A 781 46.37 -83.91 REMARK 500 7 ILE A 782 76.43 -119.14 REMARK 500 7 ASP A 800 68.42 -153.18 REMARK 500 7 ALA A 821 142.00 64.03 REMARK 500 7 PRO A 854 -164.81 -77.17 REMARK 500 8 ASP A 781 44.13 -84.07 REMARK 500 8 ASP A 800 69.74 -151.99 REMARK 500 8 ALA A 821 145.68 168.39 REMARK 500 8 LYS A 840 -155.96 -139.63 REMARK 500 8 PRO A 854 -166.89 -75.60 REMARK 500 9 HIS A 762 41.19 39.99 REMARK 500 9 ASP A 800 66.18 -152.73 REMARK 500 9 PRO A 854 -162.00 -77.12 REMARK 500 10 ASP A 781 35.01 -96.17 REMARK 500 10 ASP A 800 70.25 -150.93 REMARK 500 10 PRO A 854 -164.58 -75.77 REMARK 500 11 ASP A 800 70.65 -156.25 REMARK 500 11 LYS A 840 -155.34 -123.12 REMARK 500 11 PRO A 854 -167.32 -77.40 REMARK 500 11 ASP A 871 38.42 -99.27 REMARK 500 11 PRO A 874 46.08 -74.99 REMARK 500 12 ASP A 800 70.69 -150.56 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25871 RELATED DB: BMRB REMARK 900 RELATED ID: 2N8Y RELATED DB: PDB DBREF 2N8Z A 743 892 UNP P12814 ACTN1_HUMAN 743 892 SEQADV 2N8Z GLY A 740 UNP P12814 EXPRESSION TAG SEQADV 2N8Z SER A 741 UNP P12814 EXPRESSION TAG SEQADV 2N8Z SER A 742 UNP P12814 EXPRESSION TAG SEQRES 1 A 153 GLY SER SER ILE SER GLN GLU GLN MET ASN GLU PHE ARG SEQRES 2 A 153 ALA SER PHE ASN HIS PHE ASP ARG ASP HIS SER GLY THR SEQRES 3 A 153 LEU GLY PRO GLU GLU PHE LYS ALA CYS LEU ILE SER LEU SEQRES 4 A 153 GLY TYR ASP ILE GLY ASN ASP PRO GLN GLY GLU ALA GLU SEQRES 5 A 153 PHE ALA ARG ILE MET SER ILE VAL ASP PRO ASN ARG LEU SEQRES 6 A 153 GLY VAL VAL THR PHE GLN ALA PHE ILE ASP PHE MET SER SEQRES 7 A 153 ARG GLU THR ALA ASP THR ASP THR ALA ASP GLN VAL MET SEQRES 8 A 153 ALA SER PHE LYS ILE LEU ALA GLY ASP LYS ASN TYR ILE SEQRES 9 A 153 THR MET ASP GLU LEU ARG ARG GLU LEU PRO PRO ASP GLN SEQRES 10 A 153 ALA GLU TYR CYS ILE ALA ARG MET ALA PRO TYR THR GLY SEQRES 11 A 153 PRO ASP SER VAL PRO GLY ALA LEU ASP TYR MET SER PHE SEQRES 12 A 153 SER THR ALA LEU TYR GLY GLU SER ASP LEU HELIX 1 1 SER A 744 ASP A 759 1 16 HELIX 2 2 GLY A 767 SER A 777 1 11 HELIX 3 3 ASP A 785 ASP A 800 1 16 HELIX 4 4 PHE A 809 THR A 820 1 12 HELIX 5 5 ALA A 821 THR A 823 5 3 HELIX 6 6 THR A 825 ALA A 837 1 13 HELIX 7 7 MET A 845 LEU A 852 1 8 HELIX 8 8 ASP A 855 ALA A 862 1 8 HELIX 9 9 TYR A 879 SER A 883 1 5 SHEET 1 A 2 THR A 765 LEU A 766 0 SHEET 2 A 2 VAL A 807 THR A 808 -1 O VAL A 807 N LEU A 766 SHEET 1 B 3 ILE A 843 THR A 844 0 SHEET 2 B 3 ALA A 876 ASP A 878 -1 O LEU A 877 N ILE A 843 SHEET 3 B 3 ALA A 865 PRO A 866 -1 N ALA A 865 O ASP A 878 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000