PDB Short entry for 2N9Y HEADER MEMBRANE PROTEIN/CELL ADHESION 14-DEC-15 2N9Y TITLE STRUCTURE OF THE INTEGRIN ALPHAIIB-BETA3(A711P) TRANSMEMBRANE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-IIB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICAL TRANSMEMBRANE RESIDUES 989-1029; COMPND 5 SYNONYM: GPALPHA IIB, GPIIB, PLATELET MEMBRANE GLYCOPROTEIN IIB, COMPND 6 INTEGRIN ALPHA-IIB HEAVY CHAIN, INTEGRIN ALPHA-IIB LIGHT CHAIN, FORM COMPND 7 1, INTEGRIN ALPHA-IIB LIGHT CHAIN, FORM 2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: INTEGRIN BETA-3; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: HELICAL TRANSMEMBRANE RESIDUES 712-753; COMPND 14 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIIA, GPIIIA; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGA2B, GP2B, ITGAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET44-GB3-AIIB; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: ITGB3, GP3A; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET44-GB3-B3(A711P) KEYWDS TRANSMEMBRANE COMPLEX, INTEGRIN RECEPTOR, CELL ADHESION, HELIX KINK, KEYWDS 2 MEMBRANE PROTEIN-CELL ADHESION COMPLEX EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR T.SCHMIDT,A.J.SITU,T.S.ULMER REVDAT 1 03-AUG-16 2N9Y 0 JRNL AUTH T.SCHMIDT,A.J.SITU,T.S.ULMER JRNL TITL STRUCTURAL AND THERMODYNAMIC BASIS OF PROLINE-INDUCED JRNL TITL 2 TRANSMEMBRANE COMPLEX STABILIZATION. JRNL REF SCI REP V. 6 29809 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27436065 JRNL DOI 10.1038/SREP29809 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2N9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-15. REMARK 100 THE RCSB ID CODE IS RCSB104607. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-15N; U-2H] ALPHAIIB, REMARK 210 0.8 MM BETA3, 93% H2O/7% D2O; 0.8 REMARK 210 MM ALPHAIIB, 0.8 MM [U-15N; U-2H] REMARK 210 BETA3, 93% H2O/7% D2O; 0.8 MM [U- REMARK 210 99% 13C; U-99% 15N; 80% 2H] REMARK 210 ALPHAIIB, 0.8 MM [U-99% 13C; U- REMARK 210 99% 15N; 80% 2H] BETA3, 93% H2O/ REMARK 210 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D HNCA; 3D REMARK 210 HNCACB; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 21 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 720 H ARG B 724 1.34 REMARK 500 O GLY A 991 H ARG A 995 1.45 REMARK 500 O SER B 687 H LYS B 689 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 958 -87.62 173.14 REMARK 500 1 GLU A 960 -6.96 -54.88 REMARK 500 1 GLU A 961 93.74 61.30 REMARK 500 1 ILE A 964 64.71 -157.46 REMARK 500 1 ARG A 997 154.78 163.30 REMARK 500 1 SER B 687 -58.38 172.95 REMARK 500 1 LYS B 689 -18.35 -46.29 REMARK 500 1 LYS B 725 109.11 -43.06 REMARK 500 2 GLU A 961 98.81 51.44 REMARK 500 2 ARG A 997 74.17 41.25 REMARK 500 2 SER B 687 -62.98 -169.39 REMARK 500 3 ILE A 964 78.96 57.01 REMARK 500 3 ARG A 997 66.86 -160.48 REMARK 500 3 SER B 687 72.67 -172.72 REMARK 500 4 ILE A 964 79.69 56.15 REMARK 500 4 ASN A 996 -28.84 -146.51 REMARK 500 4 ARG A 997 74.49 -174.05 REMARK 500 4 SER B 687 70.38 42.51 REMARK 500 5 ILE A 964 70.36 -159.19 REMARK 500 5 ARG A 997 -49.25 178.76 REMARK 500 5 SER B 687 179.89 70.06 REMARK 500 6 ARG A 997 69.35 -170.61 REMARK 500 6 SER B 687 -179.95 -66.25 REMARK 500 7 ILE A 964 69.38 38.78 REMARK 500 7 LYS B 725 75.86 57.20 REMARK 500 8 ARG A 997 162.11 -42.11 REMARK 500 8 SER B 687 -44.73 178.00 REMARK 500 8 CYS B 690 151.06 58.34 REMARK 500 9 ARG A 997 151.86 166.25 REMARK 500 9 SER B 687 73.26 172.73 REMARK 500 9 CYS B 690 78.68 53.21 REMARK 500 10 ILE A 964 69.26 -178.72 REMARK 500 11 ILE A 964 75.97 32.99 REMARK 500 11 CYS B 690 -178.54 -59.82 REMARK 500 12 ALA A 958 22.02 40.75 REMARK 500 12 ARG A 997 75.92 51.18 REMARK 500 12 SER B 687 71.40 45.14 REMARK 500 13 ASN A 996 -60.31 -121.04 REMARK 500 13 ARG A 997 62.08 176.95 REMARK 500 13 SER B 687 61.97 60.52 REMARK 500 13 ARG B 724 -4.68 60.60 REMARK 500 14 ILE A 964 69.32 34.17 REMARK 500 15 ARG A 997 153.60 173.55 REMARK 500 16 ARG A 997 92.07 80.25 REMARK 500 16 SER B 687 74.44 -176.08 REMARK 500 17 GLU B 726 -88.77 47.68 REMARK 500 18 ILE A 964 72.00 -174.26 REMARK 500 18 ARG A 997 64.20 -178.91 REMARK 500 19 ILE A 964 70.12 27.73 REMARK 500 19 ARG A 997 78.94 26.85 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K9J RELATED DB: PDB REMARK 900 WILD-TYPE STRUCTURE REMARK 900 RELATED ID: 25920 RELATED DB: BMRB DBREF 2N9Y A 958 998 UNP P08514 ITA2B_HUMAN 989 1029 DBREF 2N9Y B 686 727 UNP P05106 ITB3_HUMAN 712 753 SEQADV 2N9Y GLY A 957 UNP P08514 EXPRESSION TAG SEQADV 2N9Y CYS A 963 UNP P08514 ALA 994 ENGINEERED MUTATION SEQADV 2N9Y GLY B 685 UNP P05106 EXPRESSION TAG SEQADV 2N9Y SER B 687 UNP P05106 CYS 713 ENGINEERED MUTATION SEQADV 2N9Y CYS B 690 UNP P05106 GLY 716 ENGINEERED MUTATION SEQADV 2N9Y PRO B 711 UNP P05106 ALA 737 ENGINEERED MUTATION SEQRES 1 A 42 GLY ALA LEU GLU GLU ARG CYS ILE PRO ILE TRP TRP VAL SEQRES 2 A 42 LEU VAL GLY VAL LEU GLY GLY LEU LEU LEU LEU THR ILE SEQRES 3 A 42 LEU VAL LEU ALA MET TRP LYS VAL GLY PHE PHE LYS ARG SEQRES 4 A 42 ASN ARG PRO SEQRES 1 B 43 GLY GLU SER PRO LYS CYS PRO ASP ILE LEU VAL VAL LEU SEQRES 2 B 43 LEU SER VAL MET GLY ALA ILE LEU LEU ILE GLY LEU ALA SEQRES 3 B 43 PRO LEU LEU ILE TRP LYS LEU LEU ILE THR ILE HIS ASP SEQRES 4 B 43 ARG LYS GLU PHE HELIX 1 1 PRO A 965 VAL A 990 1 26 HELIX 2 2 ASP B 692 LYS B 725 1 34 SSBOND 1 CYS A 963 CYS B 690 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000