PDB Short entry for 2NA6 HEADER APOPTOSIS 21-DEC-15 2NA6 TITLE TRANSMEMBRANE DOMAIN OF MOUSE FAS/CD95 DEATH RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HELICAL TRANSMEMBRANE RESIDUES 167-193; COMPND 5 SYNONYM: APO-1 ANTIGEN, APOPTOSIS-MEDIATING SURFACE ANTIGEN FAS, COMPND 6 FASLG RECEPTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FAS, APT1, TNFRSF6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PMM-LR6 KEYWDS TRANSMEMBRANE HELIX TRIMER, TRANSMEMBRANE DOMAIN, PROLINE-BASED KEYWDS 2 MOTIF, APOPTOSIS, STRUCTURAL GENOMICS, PSI-BIOLOGY, MEMBRANE PROTEIN KEYWDS 3 STRUCTURES BY SOLUTION NMR, MPSBYNMR EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Q.FU,J.J.CHOU,H.WU,T.FU,MEMBRANE PROTEIN STRUCTURES BY SOLUTION NMR AUTHOR 2 (MPSBYNMR) REVDAT 3 14-JUN-23 2NA6 1 REMARK SEQADV REVDAT 2 02-MAR-16 2NA6 1 JRNL REVDAT 1 27-JAN-16 2NA6 0 JRNL AUTH Q.FU,T.M.FU,A.C.CRUZ,P.SENGUPTA,S.K.THOMAS,S.WANG, JRNL AUTH 2 R.M.SIEGEL,H.WU,J.J.CHOU JRNL TITL STRUCTURAL BASIS AND FUNCTIONAL ROLE OF INTRAMEMBRANE JRNL TITL 2 TRIMERIZATION OF THE FAS/CD95 DEATH RECEPTOR. JRNL REF MOL.CELL V. 61 602 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 26853147 JRNL DOI 10.1016/J.MOLCEL.2016.01.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-15. REMARK 100 THE DEPOSITION ID IS D_1000104615. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 MOUSE FAS TRANSMEMBRANE DOMAIN, REMARK 210 60 MM [U-100% 2H] ACYL CHAINS REMARK 210 DMPC, 120 MM [U-100% 2H] ACYL REMARK 210 CHAINS DHPC, 20 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N; U-85% REMARK 210 2H] MOUSE FAS TRANSMEMBRANE REMARK 210 DOMAIN, 60 MM DMPC, 120 MM DHPC, REMARK 210 20 MM SODIUM PHOSPHATE, 95% H2O/ REMARK 210 5% D2O; 0.5 MM [U-100% 15N; U- REMARK 210 100% 2H] MOUSE FAS TRANSMEMBRANE REMARK 210 DOMAIN, 0.5 MM [U-15% 13C] MOUSE REMARK 210 FAS TRANSMEMBRANE DOMAIN, 60 MM REMARK 210 [U-100% 2H] ACYL CHAINS DMPC, REMARK 210 120 MM [U-100% 2H] ACYL CHAINS REMARK 210 DHPC, 20 MM SODIUM PHOSPHATE, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY HSQC; 3D TROSY REMARK 210 HNCA; 3D TROSY HN(CO)CA; 3D REMARK 210 TROSY HN(CA)CO; 3D TROSY HNCO; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 75 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 ARG A 167 H ASN A 168 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 181 -9.96 -58.93 REMARK 500 1 LYS A 191 46.87 -73.12 REMARK 500 1 ARG A 192 -125.44 41.07 REMARK 500 1 ASN B 168 100.52 -160.96 REMARK 500 1 ARG B 190 -142.81 87.93 REMARK 500 1 ARG B 192 -94.48 -115.45 REMARK 500 1 LYS B 193 -70.90 69.28 REMARK 500 1 ASN C 168 -168.03 -173.87 REMARK 500 1 ARG C 169 -82.91 60.75 REMARK 500 1 ARG C 190 88.14 -27.47 REMARK 500 2 ARG A 190 -69.99 62.81 REMARK 500 2 ARG A 192 -62.94 -151.44 REMARK 500 2 ASN B 168 42.16 -100.01 REMARK 500 2 ARG B 190 40.31 33.60 REMARK 500 2 LYS B 191 -113.24 -91.88 REMARK 500 2 LYS B 193 -55.75 -171.36 REMARK 500 2 ARG C 190 169.78 -46.70 REMARK 500 3 ASN A 168 115.92 57.92 REMARK 500 3 ARG A 169 -21.39 -148.85 REMARK 500 3 ARG A 190 -80.68 55.60 REMARK 500 3 LYS A 191 172.63 -46.18 REMARK 500 3 ARG A 192 135.51 96.91 REMARK 500 3 LYS A 193 -78.74 55.77 REMARK 500 3 ASN B 168 55.62 -175.05 REMARK 500 3 ARG B 169 43.71 -175.25 REMARK 500 3 ARG B 190 -84.62 32.79 REMARK 500 3 LYS B 193 -16.86 -150.21 REMARK 500 3 ASN C 168 -179.27 -68.37 REMARK 500 3 ARG C 190 157.23 66.41 REMARK 500 3 LYS C 191 84.10 -152.42 REMARK 500 3 ARG C 192 166.70 -48.48 REMARK 500 3 LYS C 193 -45.57 -153.01 REMARK 500 4 ASN A 168 -177.07 -49.20 REMARK 500 4 ARG A 169 31.55 -141.33 REMARK 500 4 ARG A 190 -111.36 11.22 REMARK 500 4 LYS A 191 -164.99 78.51 REMARK 500 4 ASN B 168 166.97 -43.57 REMARK 500 4 ARG B 169 0.99 -162.05 REMARK 500 4 ARG B 190 -84.14 40.47 REMARK 500 4 LYS B 191 -172.47 -53.59 REMARK 500 4 ARG B 192 -132.19 -149.36 REMARK 500 4 LYS B 193 -57.06 -148.53 REMARK 500 4 ASN C 168 175.11 61.51 REMARK 500 4 ARG C 169 89.38 54.34 REMARK 500 4 PRO C 181 -9.68 -59.74 REMARK 500 4 ARG C 190 -114.56 23.10 REMARK 500 4 LYS C 191 136.47 56.81 REMARK 500 4 ARG C 192 122.37 -172.89 REMARK 500 5 ILE A 180 -19.84 -48.68 REMARK 500 5 PRO A 181 -9.64 -59.49 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NA7 RELATED DB: PDB REMARK 900 RELATED ID: 25929 RELATED DB: BMRB DBREF 2NA6 A 167 193 UNP P25446 TNR6_MOUSE 167 193 DBREF 2NA6 B 167 193 UNP P25446 TNR6_MOUSE 167 193 DBREF 2NA6 C 167 193 UNP P25446 TNR6_MOUSE 167 193 SEQADV 2NA6 SER A 194 UNP P25446 EXPRESSION TAG SEQADV 2NA6 SER B 194 UNP P25446 EXPRESSION TAG SEQADV 2NA6 SER C 194 UNP P25446 EXPRESSION TAG SEQRES 1 A 28 ARG ASN ARG LEU TRP LEU LEU THR ILE LEU VAL LEU LEU SEQRES 2 A 28 ILE PRO LEU VAL PHE ILE TYR ARG LYS TYR ARG LYS ARG SEQRES 3 A 28 LYS SER SEQRES 1 B 28 ARG ASN ARG LEU TRP LEU LEU THR ILE LEU VAL LEU LEU SEQRES 2 B 28 ILE PRO LEU VAL PHE ILE TYR ARG LYS TYR ARG LYS ARG SEQRES 3 B 28 LYS SER SEQRES 1 C 28 ARG ASN ARG LEU TRP LEU LEU THR ILE LEU VAL LEU LEU SEQRES 2 C 28 ILE PRO LEU VAL PHE ILE TYR ARG LYS TYR ARG LYS ARG SEQRES 3 C 28 LYS SER HELIX 1 1 ARG A 169 ILE A 180 1 12 HELIX 2 2 ILE A 180 ARG A 190 1 11 HELIX 3 3 ARG B 169 LEU B 179 1 11 HELIX 4 4 PRO B 181 ARG B 190 1 10 HELIX 5 5 ARG C 169 ILE C 180 1 12 HELIX 6 6 ILE C 180 ARG C 190 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000