PDB Short entry for 2NOI HEADER HYDROLASE, LYASE/DNA 25-OCT-06 2NOI TITLE STRUCTURE OF G42A HUMAN 8-OXOGUANINE GLYCOSYLASE CROSSLINKED TO TITLE 2 UNDAMAGED G-CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*CP*GP*TP*C*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3'; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: 8-OXOGUANINE DNA GLYCOSYLASE, DNA-(APURINIC OR APYRIMIDINIC COMPND 13 SITE) LYASE; COMPND 14 SYNONYM: AP LYASE; COMPND 15 EC: 3.2.2.-, 4.2.99.18; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: OGG1, MMH, MUTM, OGH1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS N-GLYCOSYLASE/DNA LYASE, DNA REPAIR, 8-OXOGUANINE, HYDROLASE, LYASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.T.RADOM,A.BANERJEE,G.L.VERDINE REVDAT 6 27-DEC-23 2NOI 1 REMARK REVDAT 5 20-OCT-21 2NOI 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2NOI 1 REMARK REVDAT 3 24-FEB-09 2NOI 1 VERSN REVDAT 2 27-MAR-07 2NOI 1 JRNL REVDAT 1 21-NOV-06 2NOI 0 JRNL AUTH C.T.RADOM,A.BANERJEE,G.L.VERDINE JRNL TITL STRUCTURAL CHARACTERIZATION OF HUMAN 8-OXOGUANINE DNA JRNL TITL 2 GLYCOSYLASE VARIANTS BEARING ACTIVE SITE MUTATIONS. JRNL REF J.BIOL.CHEM. V. 282 9182 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17114185 JRNL DOI 10.1074/JBC.M608989200 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 21739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1615 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2454 REMARK 3 NUCLEIC ACID ATOMS : 388 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.80500 REMARK 3 B22 (A**2) : -6.80500 REMARK 3 B33 (A**2) : 13.61100 REMARK 3 B12 (A**2) : -7.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.253 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 48.26 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CACL2, NA CACODYLATE, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.22333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.61167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.91750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.30583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 176.52917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 141.22333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.61167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.30583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 105.91750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 176.52917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG B 1 REMARK 465 DA B 12 REMARK 465 DC B 13 REMARK 465 DG B 14 REMARK 465 DC B 15 REMARK 465 DG C 16 REMARK 465 DC C 17 REMARK 465 DG C 18 REMARK 465 DT C 19 REMARK 465 DC C 20 REMARK 465 DC C 30 REMARK 465 ALA A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 ILE A 7 REMARK 465 GLY A 80 REMARK 465 ASP A 81 REMARK 465 LYS A 82 REMARK 465 ARG A 324 REMARK 465 GLN A 325 REMARK 465 SER A 326 REMARK 465 ARG A 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC C 21 P OP1 OP2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLN A 125 CG CD OE1 NE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ARG A 206 NE CZ NH1 NH2 REMARK 470 SER A 286 OG REMARK 470 GLN A 287 CG CD OE1 NE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LYS A 297 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 19 51.76 -150.46 REMARK 500 CYS A 28 116.73 -165.54 REMARK 500 ALA A 42 30.06 74.21 REMARK 500 GLN A 43 -68.68 -99.40 REMARK 500 THR A 69 -169.38 -110.11 REMARK 500 GLN A 84 94.24 99.63 REMARK 500 CYS A 149 51.25 37.26 REMARK 500 LEU A 170 -80.20 -100.53 REMARK 500 ASP A 174 -132.19 55.68 REMARK 500 GLU A 218 -31.02 -144.10 REMARK 500 LYS A 261 73.85 -114.90 REMARK 500 THR A 285 -84.80 -75.65 REMARK 500 ASP A 322 58.00 -97.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC C 26 OP1 REMARK 620 2 DC C 26 OP2 50.9 REMARK 620 3 CYS A 241 O 172.9 132.4 REMARK 620 4 LEU A 243 O 85.0 128.7 94.7 REMARK 620 5 VAL A 246 O 104.4 86.1 82.5 80.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EBM RELATED DB: PDB REMARK 900 HOGG1 COMPLEXED WITH OXOG CONTAINING DNA REMARK 900 RELATED ID: 1YQK RELATED DB: PDB REMARK 900 HOGG1 CROSSLINKED TO DNA SAMPLING AN UNDAMAGED G REMARK 900 RELATED ID: 1YQR RELATED DB: PDB REMARK 900 CATALYTICALLY INACTIVE HOGG1 CROSSLINKED TO OXOG CONTAINING DNA REMARK 900 RELATED ID: 2NOB RELATED DB: PDB REMARK 900 RELATED ID: 2NOE RELATED DB: PDB REMARK 900 RELATED ID: 2NOF RELATED DB: PDB REMARK 900 RELATED ID: 2NOH RELATED DB: PDB REMARK 900 RELATED ID: 2NOL RELATED DB: PDB REMARK 900 RELATED ID: 2NOZ RELATED DB: PDB DBREF 2NOI A 12 327 UNP O15527 OGG1_HUMAN 12 327 DBREF 2NOI B 1 15 PDB 2NOI 2NOI 1 15 DBREF 2NOI C 16 30 PDB 2NOI 2NOI 16 30 SEQADV 2NOI ALA A 3 UNP O15527 CLONING ARTIFACT SEQADV 2NOI MET A 4 UNP O15527 CLONING ARTIFACT SEQADV 2NOI ALA A 5 UNP O15527 CLONING ARTIFACT SEQADV 2NOI ASP A 6 UNP O15527 CLONING ARTIFACT SEQADV 2NOI ILE A 7 UNP O15527 CLONING ARTIFACT SEQADV 2NOI GLY A 8 UNP O15527 CLONING ARTIFACT SEQADV 2NOI SER A 9 UNP O15527 CLONING ARTIFACT SEQADV 2NOI GLU A 10 UNP O15527 CLONING ARTIFACT SEQADV 2NOI PHE A 11 UNP O15527 CLONING ARTIFACT SEQADV 2NOI ALA A 42 UNP O15527 GLY 42 ENGINEERED MUTATION SEQADV 2NOI CYS A 149 UNP O15527 ASN 149 ENGINEERED MUTATION SEQADV 2NOI GLN A 249 UNP O15527 LYS 249 ENGINEERED MUTATION SEQRES 1 B 15 DG DG DT DA DG DA DC DC DT DG DG DA DC SEQRES 2 B 15 DG DC SEQRES 1 C 15 DG DC DG DT DC DC DA DG DG DT DC DT DA SEQRES 2 C 15 DC DC SEQRES 1 A 325 ALA MET ALA ASP ILE GLY SER GLU PHE GLY HIS ARG THR SEQRES 2 A 325 LEU ALA SER THR PRO ALA LEU TRP ALA SER ILE PRO CYS SEQRES 3 A 325 PRO ARG SER GLU LEU ARG LEU ASP LEU VAL LEU PRO SER SEQRES 4 A 325 ALA GLN SER PHE ARG TRP ARG GLU GLN SER PRO ALA HIS SEQRES 5 A 325 TRP SER GLY VAL LEU ALA ASP GLN VAL TRP THR LEU THR SEQRES 6 A 325 GLN THR GLU GLU GLN LEU HIS CYS THR VAL TYR ARG GLY SEQRES 7 A 325 ASP LYS SER GLN ALA SER ARG PRO THR PRO ASP GLU LEU SEQRES 8 A 325 GLU ALA VAL ARG LYS TYR PHE GLN LEU ASP VAL THR LEU SEQRES 9 A 325 ALA GLN LEU TYR HIS HIS TRP GLY SER VAL ASP SER HIS SEQRES 10 A 325 PHE GLN GLU VAL ALA GLN LYS PHE GLN GLY VAL ARG LEU SEQRES 11 A 325 LEU ARG GLN ASP PRO ILE GLU CYS LEU PHE SER PHE ILE SEQRES 12 A 325 CYS SER SER CYS ASN ASN ILE ALA ARG ILE THR GLY MET SEQRES 13 A 325 VAL GLU ARG LEU CYS GLN ALA PHE GLY PRO ARG LEU ILE SEQRES 14 A 325 GLN LEU ASP ASP VAL THR TYR HIS GLY PHE PRO SER LEU SEQRES 15 A 325 GLN ALA LEU ALA GLY PRO GLU VAL GLU ALA HIS LEU ARG SEQRES 16 A 325 LYS LEU GLY LEU GLY TYR ARG ALA ARG TYR VAL SER ALA SEQRES 17 A 325 SER ALA ARG ALA ILE LEU GLU GLU GLN GLY GLY LEU ALA SEQRES 18 A 325 TRP LEU GLN GLN LEU ARG GLU SER SER TYR GLU GLU ALA SEQRES 19 A 325 HIS LYS ALA LEU CYS ILE LEU PRO GLY VAL GLY THR GLN SEQRES 20 A 325 VAL ALA ASP CYS ILE CYS LEU MET ALA LEU ASP LYS PRO SEQRES 21 A 325 GLN ALA VAL PRO VAL ASP VAL HIS MET TRP HIS ILE ALA SEQRES 22 A 325 GLN ARG ASP TYR SER TRP HIS PRO THR THR SER GLN ALA SEQRES 23 A 325 LYS GLY PRO SER PRO GLN THR ASN LYS GLU LEU GLY ASN SEQRES 24 A 325 PHE PHE ARG SER LEU TRP GLY PRO TYR ALA GLY TRP ALA SEQRES 25 A 325 GLN ALA VAL LEU PHE SER ALA ASP LEU ARG GLN SER ARG HET CA C 301 1 HETNAM CA CALCIUM ION FORMUL 4 CA CA 2+ FORMUL 5 HOH *142(H2 O) HELIX 1 1 THR A 19 TRP A 23 5 5 HELIX 2 2 ARG A 34 LEU A 39 1 6 HELIX 3 3 THR A 89 PHE A 100 1 12 HELIX 4 4 THR A 105 ASP A 117 1 13 HELIX 5 5 ASP A 117 LYS A 126 1 10 HELIX 6 6 ASP A 136 CYS A 146 1 11 HELIX 7 7 ASN A 151 GLY A 167 1 17 HELIX 8 8 SER A 183 GLY A 189 1 7 HELIX 9 9 GLU A 191 LEU A 199 1 9 HELIX 10 10 TYR A 203 GLN A 219 1 17 HELIX 11 11 GLY A 221 GLN A 227 1 7 HELIX 12 12 LEU A 228 SER A 231 5 4 HELIX 13 13 SER A 232 CYS A 241 1 10 HELIX 14 14 GLY A 247 LEU A 259 1 13 HELIX 15 15 ASP A 268 SER A 280 1 13 HELIX 16 16 SER A 292 GLY A 308 1 17 HELIX 17 17 TYR A 310 ASP A 322 1 13 SHEET 1 A 5 ALA A 24 PRO A 27 0 SHEET 2 A 5 GLN A 72 TYR A 78 -1 O CYS A 75 N ALA A 24 SHEET 3 A 5 GLN A 62 GLN A 68 -1 N THR A 67 O HIS A 74 SHEET 4 A 5 HIS A 54 LEU A 59 -1 N LEU A 59 O GLN A 62 SHEET 5 A 5 ARG A 48 SER A 51 -1 N SER A 51 O HIS A 54 SHEET 1 B 2 ARG A 169 LEU A 173 0 SHEET 2 B 2 VAL A 176 HIS A 179 -1 O TYR A 178 N LEU A 170 LINK OP1 DC C 26 CA CA C 301 1555 1555 2.69 LINK OP2 DC C 26 CA CA C 301 1555 1555 3.19 LINK CA CA C 301 O CYS A 241 1555 1555 2.49 LINK CA CA C 301 O LEU A 243 1555 1555 2.72 LINK CA CA C 301 O VAL A 246 1555 1555 2.89 SITE 1 AC1 4 CYS A 241 LEU A 243 VAL A 246 DC C 26 CRYST1 91.888 91.888 211.835 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010883 0.006283 0.000000 0.00000 SCALE2 0.000000 0.012566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004721 0.00000