PDB Short entry for 2NPL HEADER CELL ADHESION 27-OCT-06 2NPL TITLE NMR STRUCTURE OF CARD D2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: DOMAIN CAR 2; COMPND 5 SYNONYM: COXSACKIEVIRUS B- ADENOVIRUS RECEPTOR; HCAR; CVB3-BINDING COMPND 6 PROTEIN; HCVADR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CXADR, CAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS COXSAKIEVIRUS AND ADENOVIRUS RECEPTOR, CELL ADHESION EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR S.JIANG,M.CAFFREY REVDAT 4 27-DEC-23 2NPL 1 REMARK REVDAT 3 16-MAR-22 2NPL 1 REMARK SEQADV REVDAT 2 24-FEB-09 2NPL 1 VERSN REVDAT 1 13-MAR-07 2NPL 0 JRNL AUTH S.JIANG,M.CAFFREY JRNL TITL SOLUTION STRUCTURE OF THE COXSACKIEVIRUS AND ADENOVIRUS JRNL TITL 2 RECEPTOR DOMAIN 2 JRNL REF PROTEIN SCI. V. 16 539 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17322536 JRNL DOI 10.1110/PS.062643507 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ET AL (CNS), BRUNGER, ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE IS BASED ON THE AVERAGE REMARK 3 STRUCTURE OF THE 30 LOWEST ENERGY STRUCTURES WITH 488 DISTANCE REMARK 3 RESTRAINTS, 234 DIHEDRAL RESTRAINTS AND 47 HODROGEN BOND REMARK 3 RESTRAINTS. REMARK 4 REMARK 4 2NPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040147. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; HNHA; 3D_13C-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU X 27 H SER X 29 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE X 19 CB - CG - CD2 ANGL. DEV. = 14.0 DEGREES REMARK 500 PHE X 19 CD1 - CG - CD2 ANGL. DEV. = -63.0 DEGREES REMARK 500 PHE X 19 CB - CG - CD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 PHE X 19 CG - CD1 - CE1 ANGL. DEV. = -42.0 DEGREES REMARK 500 PHE X 19 CG - CD2 - CE2 ANGL. DEV. = -41.1 DEGREES REMARK 500 PHE X 19 CD1 - CE1 - CZ ANGL. DEV. = -41.0 DEGREES REMARK 500 PHE X 19 CE1 - CZ - CE2 ANGL. DEV. = -74.5 DEGREES REMARK 500 PHE X 19 CZ - CE2 - CD2 ANGL. DEV. = -43.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE X 15 96.76 -58.62 REMARK 500 LYS X 20 136.86 -176.00 REMARK 500 LEU X 32 -60.70 -98.68 REMARK 500 GLN X 43 -12.09 -34.56 REMARK 500 MET X 45 74.25 -153.06 REMARK 500 SER X 55 -72.44 -108.02 REMARK 500 SER X 56 -44.78 94.32 REMARK 500 VAL X 79 55.98 -106.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE X 19 0.46 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RSF RELATED DB: PDB REMARK 900 NMR STRUCTURE OF MONOMERIC CAR D1 DOMAIN DBREF 2NPL X 3 96 UNP P78310 CXAR_HUMAN 142 235 SEQADV 2NPL GLY X 1 UNP P78310 CLONING ARTIFACT SEQADV 2NPL SER X 2 UNP P78310 CLONING ARTIFACT SEQRES 1 X 96 GLY SER SER GLY ALA ARG CYS TYR VAL ASP GLY SER GLU SEQRES 2 X 96 GLU ILE GLY SER ASP PHE LYS ILE LYS CYS GLU PRO LYS SEQRES 3 X 96 GLU GLY SER LEU PRO LEU GLN TYR GLU TRP GLN LYS LEU SEQRES 4 X 96 SER ASP SER GLN LYS MET PRO THR SER TRP LEU ALA GLU SEQRES 5 X 96 MET THR SER SER VAL ILE SER VAL LYS ASN ALA SER SER SEQRES 6 X 96 GLU TYR SER GLY THR TYR SER CYS THR VAL ARG ASN ARG SEQRES 7 X 96 VAL GLY SER ASP GLN CYS LEU LEU ARG LEU ASN VAL VAL SEQRES 8 X 96 PRO PRO SER ASN LYS HELIX 1 1 MET X 45 THR X 54 1 10 SHEET 1 A 3 ARG X 6 VAL X 9 0 SHEET 2 A 3 SER X 17 GLU X 24 -1 O LYS X 22 N TYR X 8 SHEET 3 A 3 ILE X 58 ASN X 62 -1 O ILE X 58 N ILE X 21 SHEET 1 B 3 GLN X 33 LEU X 39 0 SHEET 2 B 3 GLY X 69 ARG X 76 -1 O ARG X 76 N GLN X 33 SHEET 3 B 3 ASP X 82 LEU X 88 -1 O ASP X 82 N VAL X 75 SSBOND 1 CYS X 7 CYS X 84 1555 1555 2.03 SSBOND 2 CYS X 23 CYS X 73 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000