PDB Short entry for 2NPT HEADER TRANSFERASE 30-OCT-06 2NPT TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN MITOGEN ACTIVATED PROTEIN TITLE 2 KINASE KINASE 5 PHOX DOMAIN (MAP2K5-PHOX) WITH HUMAN MITOGEN TITLE 3 ACTIVATED PROTEIN KINASE KINASE KINASE 2 PHOX DOMAIN (MAP3K2-PHOX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: MAP2K5-PHOX; COMPND 5 SYNONYM: MAP KINASE KINASE 5, MAPKK 5, MAPK/ERK KINASE 5; COMPND 6 EC: 2.7.12.2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 2; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: MAP3K2-PHOX; COMPND 12 SYNONYM: MAPK/ERK KINASE KINASE 2, MEK KINASE 2, MEKK 2; COMPND 13 EC: 2.7.11.25; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP2K5, MEK5, MKK5, PRKMK5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: MAP3K2, MAPKKK2, MEKK2; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3)-R3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS MITOGEN ACTIVATED PROTEIN KINASE KINASE 5, MAP2K5, MEK5, MKK5, KEYWDS 2 PRKMK5, MAP KINASE KINASE 5, PHOX, PHOX-DOMAIN, MITOGEN ACTIVATED KEYWDS 3 PROTEIN KINASE KINASE KINASE 2, MAP3K2, MAPK/ERK KINASE KINASE 2, KEYWDS 4 MAPKKK2, MEK KINASE 2, MEKK2, MEKK2B, STRUCTURAL GENOMICS, KEYWDS 5 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,J.DEBRECZENI,V.PAPAGRIGORIOU,A.TURNBULL,A.EDWARDS, AUTHOR 2 C.ARROWSMITH,M.SUNDSTROM,F.VON DELFT,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2NPT 1 SEQADV REVDAT 3 13-JUL-11 2NPT 1 VERSN REVDAT 2 24-FEB-09 2NPT 1 VERSN REVDAT 1 28-NOV-06 2NPT 0 JRNL AUTH P.FILIPPAKOPOULOS,J.DEBRECZENI,V.PAPAGRIGORIOU,A.TURNBULL, JRNL AUTH 2 A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,F.VON DELFT,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN MITOGEN ACTIVATED JRNL TITL 2 PROTEIN KINASE KINASE 5 PHOX DOMAIN (MAP2K5-PHOX) WITH HUMAN JRNL TITL 3 MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 2 PHOX DOMAIN JRNL TITL 4 (MAP3K2-PHOX) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3002 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2013 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4072 ; 1.519 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4949 ; 0.974 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 5.831 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;33.856 ;24.963 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;13.416 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 480 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3287 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 557 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 525 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2031 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1409 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1634 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 214 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.295 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 1.191 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 746 ; 0.284 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3058 ; 1.859 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1182 ; 2.733 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1010 ; 4.033 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3934 73.7697 44.0691 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: -0.0296 REMARK 3 T33: -0.0132 T12: -0.0322 REMARK 3 T13: -0.0105 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 2.5004 L22: 45.3325 REMARK 3 L33: 5.3472 L12: 8.5876 REMARK 3 L13: 3.0583 L23: 15.2758 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.0337 S13: -0.2559 REMARK 3 S21: -1.1548 S22: 0.6175 S23: -0.7002 REMARK 3 S31: -0.4295 S32: -0.2132 S33: -0.6459 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8183 50.9094 32.0605 REMARK 3 T TENSOR REMARK 3 T11: -0.0301 T22: -0.0295 REMARK 3 T33: -0.0084 T12: 0.0115 REMARK 3 T13: 0.0048 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.5843 L22: 0.4946 REMARK 3 L33: 0.6343 L12: -0.3448 REMARK 3 L13: -0.1473 L23: 0.1897 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.0306 S13: -0.0178 REMARK 3 S21: -0.0718 S22: 0.0380 S23: -0.0714 REMARK 3 S31: -0.0080 S32: -0.0517 S33: -0.0682 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 42 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1072 50.1647 -11.9921 REMARK 3 T TENSOR REMARK 3 T11: -0.0372 T22: -0.0161 REMARK 3 T33: -0.0279 T12: -0.0182 REMARK 3 T13: -0.0022 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 0.6072 L22: 1.9728 REMARK 3 L33: 1.7315 L12: 0.6673 REMARK 3 L13: 0.6881 L23: 0.8565 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.0667 S13: -0.1185 REMARK 3 S21: 0.0037 S22: 0.0705 S23: -0.0300 REMARK 3 S31: -0.0187 S32: 0.1534 S33: -0.1417 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7408 74.5604 -11.7236 REMARK 3 T TENSOR REMARK 3 T11: -0.0152 T22: -0.0342 REMARK 3 T33: -0.0242 T12: -0.0107 REMARK 3 T13: 0.0162 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 9.3871 L22: 3.7016 REMARK 3 L33: 5.4395 L12: 4.7586 REMARK 3 L13: -3.8023 L23: 0.3147 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.3047 S13: -0.0848 REMARK 3 S21: -0.3300 S22: -0.0780 S23: 0.0516 REMARK 3 S31: 0.2320 S32: 0.0708 S33: 0.1330 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 108 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4542 67.0577 3.2750 REMARK 3 T TENSOR REMARK 3 T11: -0.0087 T22: -0.0179 REMARK 3 T33: -0.0393 T12: 0.0004 REMARK 3 T13: 0.0054 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.4923 L22: 0.5793 REMARK 3 L33: 1.4517 L12: -0.1135 REMARK 3 L13: -0.3565 L23: 0.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0219 S13: 0.0124 REMARK 3 S21: 0.0251 S22: 0.0525 S23: -0.0211 REMARK 3 S31: 0.0179 S32: 0.0059 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 35 D 42 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6144 73.5028 46.4321 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: -0.0227 REMARK 3 T33: -0.0156 T12: -0.0273 REMARK 3 T13: -0.0977 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 5.7411 L22: 3.5378 REMARK 3 L33: 1.5181 L12: -4.1399 REMARK 3 L13: 1.8897 L23: -2.0664 REMARK 3 S TENSOR REMARK 3 S11: 0.4714 S12: -0.0369 S13: 0.0472 REMARK 3 S21: 1.1322 S22: -0.9419 S23: -0.3011 REMARK 3 S31: 0.0534 S32: -0.5018 S33: 0.4704 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 43 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8992 50.3500 45.2021 REMARK 3 T TENSOR REMARK 3 T11: -0.0649 T22: 0.0020 REMARK 3 T33: -0.0150 T12: -0.0110 REMARK 3 T13: -0.0202 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.6518 L22: 1.2429 REMARK 3 L33: 1.6366 L12: 0.2449 REMARK 3 L13: -0.6795 L23: -0.0849 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.0031 S13: -0.0421 REMARK 3 S21: 0.0267 S22: -0.0866 S23: -0.0207 REMARK 3 S31: -0.0336 S32: -0.0361 S33: 0.1133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42219 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 61.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87600 REMARK 200 R SYM FOR SHELL (I) : 0.87600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2CU1, 2C60, 1WI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4(CH3COO), 0.1M TRIS, 25% PEG REMARK 280 3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.16650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.82550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.82550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.16650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 GLY A 36 REMARK 465 PRO A 37 REMARK 465 SER B 24 REMARK 465 MET B 25 REMARK 465 SER B 26 REMARK 465 LEU B 27 REMARK 465 GLN B 28 REMARK 465 GLU B 29 REMARK 465 THR B 30 REMARK 465 ARG B 31 REMARK 465 LYS B 32 REMARK 465 ALA B 33 REMARK 465 LYS B 34 REMARK 465 SER B 35 REMARK 465 SER B 36 REMARK 465 SER B 37 REMARK 465 PRO B 38 REMARK 465 LYS B 39 REMARK 465 LYS B 40 REMARK 465 GLN B 41 REMARK 465 SER C 35 REMARK 465 GLY C 36 REMARK 465 PRO C 37 REMARK 465 SER D 24 REMARK 465 MET D 25 REMARK 465 SER D 26 REMARK 465 LEU D 27 REMARK 465 GLN D 28 REMARK 465 GLU D 29 REMARK 465 THR D 30 REMARK 465 ARG D 31 REMARK 465 LYS D 32 REMARK 465 ALA D 33 REMARK 465 LYS D 34 REMARK 465 GLY D 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 HIS A 34 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 35 OG REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 GLU A 91 OE1 OE2 REMARK 470 LEU A 98 CG CD1 CD2 REMARK 470 LYS B 64 CE NZ REMARK 470 LYS B 73 NZ REMARK 470 ASP B 97 OD1 OD2 REMARK 470 LYS B 113 CE NZ REMARK 470 LYS C 22 CE NZ REMARK 470 HIS C 34 CG ND1 CD2 CE1 NE2 REMARK 470 GLN C 38 CG CD OE1 NE2 REMARK 470 ARG C 42 NE CZ NH1 NH2 REMARK 470 LYS C 79 CE NZ REMARK 470 GLU C 91 OE1 OE2 REMARK 470 GLN C 97 CD OE1 NE2 REMARK 470 LEU C 98 CG CD1 CD2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 LYS D 40 CG CD CE NZ REMARK 470 ARG D 51 NH1 NH2 REMARK 470 LYS D 64 NZ REMARK 470 ARG D 69 CD NE CZ NH1 NH2 REMARK 470 LYS D 71 CE NZ REMARK 470 ARG D 108 NE CZ NH1 NH2 REMARK 470 SER D 109 OG REMARK 470 MET D 112 CG SD CE REMARK 470 LYS D 113 CE NZ REMARK 470 LYS D 116 CE NZ REMARK 470 ASN D 122 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR D 85 O HOH D 148 2.13 REMARK 500 OD2 ASP A 46 O HOH A 183 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG C 69 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 69 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG D 55 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG D 55 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -25.05 -140.15 REMARK 500 ASN B 87 -105.26 48.89 REMARK 500 SER C 26 -14.17 -140.22 REMARK 500 LYS D 39 72.16 -101.71 REMARK 500 ASN D 87 -107.79 51.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NPT A 5 108 UNP Q13163 MP2K5_HUMAN 5 108 DBREF 2NPT C 5 108 UNP Q13163 MP2K5_HUMAN 5 108 DBREF 2NPT B 26 123 UNP Q9Y2U5 M3K2_HUMAN 26 123 DBREF 2NPT D 26 123 UNP Q9Y2U5 M3K2_HUMAN 26 123 SEQADV 2NPT SER A 3 UNP Q13163 CLONING ARTIFACT SEQADV 2NPT MET A 4 UNP Q13163 CLONING ARTIFACT SEQADV 2NPT SER C 3 UNP Q13163 CLONING ARTIFACT SEQADV 2NPT MET C 4 UNP Q13163 CLONING ARTIFACT SEQADV 2NPT SER B 24 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2NPT MET B 25 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2NPT SER D 24 UNP Q9Y2U5 CLONING ARTIFACT SEQADV 2NPT MET D 25 UNP Q9Y2U5 CLONING ARTIFACT SEQRES 1 A 106 SER MET ALA LEU GLY PRO PHE PRO ALA MET GLU ASN GLN SEQRES 2 A 106 VAL LEU VAL ILE ARG ILE LYS ILE PRO ASN SER GLY ALA SEQRES 3 A 106 VAL ASP TRP THR VAL HIS SER GLY PRO GLN LEU LEU PHE SEQRES 4 A 106 ARG ASP VAL LEU ASP VAL ILE GLY GLN VAL LEU PRO GLU SEQRES 5 A 106 ALA THR THR THR ALA PHE GLU TYR GLU ASP GLU ASP GLY SEQRES 6 A 106 ASP ARG ILE THR VAL ARG SER ASP GLU GLU MET LYS ALA SEQRES 7 A 106 MET LEU SER TYR TYR TYR SER THR VAL MET GLU GLN GLN SEQRES 8 A 106 VAL ASN GLY GLN LEU ILE GLU PRO LEU GLN ILE PHE PRO SEQRES 9 A 106 ARG ALA SEQRES 1 B 100 SER MET SER LEU GLN GLU THR ARG LYS ALA LYS SER SER SEQRES 2 B 100 SER PRO LYS LYS GLN ASN ASP VAL ARG VAL LYS PHE GLU SEQRES 3 B 100 HIS ARG GLY GLU LYS ARG ILE LEU GLN PHE PRO ARG PRO SEQRES 4 B 100 VAL LYS LEU GLU ASP LEU ARG SER LYS ALA LYS ILE ALA SEQRES 5 B 100 PHE GLY GLN SER MET ASP LEU HIS TYR THR ASN ASN GLU SEQRES 6 B 100 LEU VAL ILE PRO LEU THR THR GLN ASP ASP LEU ASP LYS SEQRES 7 B 100 ALA VAL GLU LEU LEU ASP ARG SER ILE HIS MET LYS SER SEQRES 8 B 100 LEU LYS ILE LEU LEU VAL ILE ASN GLY SEQRES 1 C 106 SER MET ALA LEU GLY PRO PHE PRO ALA MET GLU ASN GLN SEQRES 2 C 106 VAL LEU VAL ILE ARG ILE LYS ILE PRO ASN SER GLY ALA SEQRES 3 C 106 VAL ASP TRP THR VAL HIS SER GLY PRO GLN LEU LEU PHE SEQRES 4 C 106 ARG ASP VAL LEU ASP VAL ILE GLY GLN VAL LEU PRO GLU SEQRES 5 C 106 ALA THR THR THR ALA PHE GLU TYR GLU ASP GLU ASP GLY SEQRES 6 C 106 ASP ARG ILE THR VAL ARG SER ASP GLU GLU MET LYS ALA SEQRES 7 C 106 MET LEU SER TYR TYR TYR SER THR VAL MET GLU GLN GLN SEQRES 8 C 106 VAL ASN GLY GLN LEU ILE GLU PRO LEU GLN ILE PHE PRO SEQRES 9 C 106 ARG ALA SEQRES 1 D 100 SER MET SER LEU GLN GLU THR ARG LYS ALA LYS SER SER SEQRES 2 D 100 SER PRO LYS LYS GLN ASN ASP VAL ARG VAL LYS PHE GLU SEQRES 3 D 100 HIS ARG GLY GLU LYS ARG ILE LEU GLN PHE PRO ARG PRO SEQRES 4 D 100 VAL LYS LEU GLU ASP LEU ARG SER LYS ALA LYS ILE ALA SEQRES 5 D 100 PHE GLY GLN SER MET ASP LEU HIS TYR THR ASN ASN GLU SEQRES 6 D 100 LEU VAL ILE PRO LEU THR THR GLN ASP ASP LEU ASP LYS SEQRES 7 D 100 ALA VAL GLU LEU LEU ASP ARG SER ILE HIS MET LYS SER SEQRES 8 D 100 LEU LYS ILE LEU LEU VAL ILE ASN GLY FORMUL 5 HOH *320(H2 O) HELIX 1 1 LEU A 40 LEU A 52 1 13 HELIX 2 2 SER A 74 VAL A 94 1 21 HELIX 3 3 LYS B 64 GLY B 77 1 14 HELIX 4 4 THR B 95 SER B 109 1 15 HELIX 5 5 LEU C 40 LEU C 52 1 13 HELIX 6 6 SER C 74 ASN C 95 1 22 HELIX 7 7 LYS D 64 GLY D 77 1 14 HELIX 8 8 THR D 95 SER D 109 1 15 SHEET 1 A 5 GLY A 27 VAL A 33 0 SHEET 2 A 5 LEU A 17 ILE A 23 -1 N ILE A 21 O VAL A 29 SHEET 3 A 5 LEU A 102 ARG A 107 1 O ILE A 104 N LYS A 22 SHEET 4 A 5 ALA A 59 GLU A 63 -1 N ALA A 59 O ARG A 107 SHEET 5 A 5 ARG A 69 VAL A 72 -1 O ILE A 70 N TYR A 62 SHEET 1 B 5 GLU B 53 PHE B 59 0 SHEET 2 B 5 VAL B 44 HIS B 50 -1 N VAL B 46 O LEU B 57 SHEET 3 B 5 LEU B 115 ILE B 121 1 O ILE B 117 N LYS B 47 SHEET 4 B 5 MET B 80 ASN B 86 -1 N ASP B 81 O VAL B 120 SHEET 5 B 5 LEU B 89 PRO B 92 -1 O ILE B 91 N TYR B 84 SHEET 1 C 5 GLY C 27 THR C 32 0 SHEET 2 C 5 VAL C 18 ILE C 23 -1 N ILE C 19 O TRP C 31 SHEET 3 C 5 LEU C 102 ARG C 107 1 O LEU C 102 N ARG C 20 SHEET 4 C 5 ALA C 59 GLU C 63 -1 N ALA C 59 O ARG C 107 SHEET 5 C 5 ARG C 69 VAL C 72 -1 O ILE C 70 N TYR C 62 SHEET 1 D 5 GLU D 53 PHE D 59 0 SHEET 2 D 5 VAL D 44 HIS D 50 -1 N VAL D 44 O PHE D 59 SHEET 3 D 5 LEU D 115 ILE D 121 1 O LEU D 115 N ARG D 45 SHEET 4 D 5 MET D 80 ASN D 86 -1 N ASP D 81 O VAL D 120 SHEET 5 D 5 LEU D 89 PRO D 92 -1 O ILE D 91 N TYR D 84 CISPEP 1 ARG B 61 PRO B 62 0 -1.20 CISPEP 2 ARG D 61 PRO D 62 0 -6.73 CRYST1 46.333 61.410 143.651 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021583 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006961 0.00000