PDB Short entry for 2NQ1 HEADER DNA 30-OCT-06 2NQ1 TITLE SOLUTION STRUCTURES OF A DNA DODECAMER DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3'; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES KEYWDS DEOXYRIBONUCLEIC ACID, DUPLEX, DODECAMER, DNA EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR D.BHATTACHARYYA,Y.WU,S.CHANEY,S.CAMPBELL REVDAT 4 27-DEC-23 2NQ1 1 REMARK REVDAT 3 16-MAR-22 2NQ1 1 REMARK REVDAT 2 24-FEB-09 2NQ1 1 VERSN REVDAT 1 12-JUN-07 2NQ1 0 JRNL AUTH Y.WU,D.BHATTACHARYYA,C.L.KING,I.BASKERVILLE-ABRAHAM, JRNL AUTH 2 S.-H.HUH,G.BOYSEN,J.A.SWENBERG,B.TEMPLE,S.L.CAMPBELL, JRNL AUTH 3 S.G.CHANEY JRNL TITL SOLUTION STRUCTURES OF A DNA DODECAMER DUPLEX WITH AND JRNL TITL 2 WITHOUT A CISPLATIN 1,2-D(GG) INTRASTRAND CROSS-LINK: JRNL TITL 3 COMPARISON WITH THE SAME DNA DUPLEX CONTAINING AN JRNL TITL 4 OXALIPLATIN 1,2-D(GG) INTRASTRAND CROSS-LINK JRNL REF BIOCHEMISTRY V. 46 6477 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17497831 JRNL DOI 10.1021/BI062291F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : CAMPBELL (CNS), CAMPBELL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040162. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL, 5MM NAPI REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MM NACL, 5 MM PHOSPHATE REMARK 210 BUFFER, PH 7.0, 95% H2O, 5% D2O; REMARK 210 100 MM NACL, 5 MM PHOSPHATE REMARK 210 BUFFER, PH 7.0, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; 2D REMARK 210 1H 31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DC A 2 H21 DG B 23 1.50 REMARK 500 H21 DG A 7 O2 DC B 18 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NPW RELATED DB: PDB REMARK 900 RELATED ID: 2NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 2NQ4 RELATED DB: PDB DBREF 2NQ1 A 1 12 PDB 2NQ1 2NQ1 1 12 DBREF 2NQ1 B 13 24 PDB 2NQ1 2NQ1 13 24 SEQRES 1 A 12 DC DC DT DC DA DG DG DC DC DT DC DC SEQRES 1 B 12 DG DG DA DG DG DC DC DT DG DA DG DG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000