PDB Short entry for 2NR9 HEADER MEMBRANE PROTEIN 01-NOV-06 2NR9 TITLE CRYSTAL STRUCTURE OF GLPG, RHOMBOID PEPTIDASE FROM HAEMOPHILUS TITLE 2 INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN GLPG HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLPG, RHOMBOID PEPTIDASE; COMPND 5 EC: 3.4.21.105; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 281310; SOURCE 4 STRAIN: 86-028NP; SOURCE 5 GENE: GLPG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD-MYCHISA KEYWDS INTRAMEMBRANE PEPTIDASE, RHOMBOID PROTEASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.LEMIEUX,S.J.FISCHER,M.M.CHERNEY,K.S.BATEMAN,M.N.G.JAMES REVDAT 6 30-AUG-23 2NR9 1 REMARK REVDAT 5 20-OCT-21 2NR9 1 REMARK SEQADV REVDAT 4 13-JUL-11 2NR9 1 VERSN REVDAT 3 24-FEB-09 2NR9 1 VERSN REVDAT 2 16-JAN-07 2NR9 1 JRNL REVDAT 1 14-NOV-06 2NR9 0 JRNL AUTH M.J.LEMIEUX,S.J.FISCHER,M.M.CHERNEY,K.S.BATEMAN,M.N.G.JAMES JRNL TITL THE CRYSTAL STRUCTURE OF THE RHOMBOID PEPTIDASE FROM JRNL TITL 2 HAEMOPHILUS INFLUENZAE PROVIDES INSIGHT INTO INTRAMEMBRANE JRNL TITL 3 PROTEOLYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 750 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17210913 JRNL DOI 10.1073/PNAS.0609981104 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 10147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 733 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.397 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1732 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2318 ; 0.992 ; 2.018 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 191 ; 2.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;23.219 ;23.284 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 264 ;11.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 8.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1190 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 939 ; 0.288 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1183 ; 0.344 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.229 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.406 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.327 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 978 ; 1.269 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1543 ; 1.960 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 851 ; 1.071 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 775 ; 1.199 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2760 -10.2910 28.5210 REMARK 3 T TENSOR REMARK 3 T11: -0.0255 T22: -0.1125 REMARK 3 T33: 0.0312 T12: -0.0236 REMARK 3 T13: 0.0305 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 4.1486 L22: 2.4504 REMARK 3 L33: 11.6729 L12: 1.8451 REMARK 3 L13: 3.8275 L23: 4.4817 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.3133 S13: -0.2653 REMARK 3 S21: 0.2537 S22: -0.1574 S23: 0.2586 REMARK 3 S31: 0.2963 S32: -0.6221 S33: 0.1962 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7400 -2.5050 12.2450 REMARK 3 T TENSOR REMARK 3 T11: -0.0243 T22: -0.0258 REMARK 3 T33: -0.1319 T12: -0.0138 REMARK 3 T13: -0.0444 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 5.4564 L22: 4.7541 REMARK 3 L33: 4.2152 L12: 2.5565 REMARK 3 L13: -2.3288 L23: -1.1500 REMARK 3 S TENSOR REMARK 3 S11: -0.1341 S12: 0.6366 S13: 0.1683 REMARK 3 S21: -0.2496 S22: 0.1446 S23: -0.0456 REMARK 3 S31: -0.2296 S32: -0.2895 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5880 -13.9090 31.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: -0.1780 REMARK 3 T33: 0.0365 T12: 0.0152 REMARK 3 T13: 0.0362 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 3.6377 L22: 2.5037 REMARK 3 L33: 6.8685 L12: 2.0293 REMARK 3 L13: 2.3760 L23: 3.9955 REMARK 3 S TENSOR REMARK 3 S11: -0.2552 S12: -0.3108 S13: -0.5959 REMARK 3 S21: 0.2959 S22: -0.0150 S23: 0.1070 REMARK 3 S31: 0.4585 S32: 0.2481 S33: 0.2702 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9410 -2.8830 21.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.0216 T22: -0.1150 REMARK 3 T33: -0.0396 T12: -0.0249 REMARK 3 T13: -0.0281 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.0282 L22: 0.0276 REMARK 3 L33: 8.8908 L12: -0.3076 REMARK 3 L13: -3.1272 L23: 0.4389 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: 0.1939 S13: 0.0389 REMARK 3 S21: 0.0210 S22: -0.0171 S23: 0.0837 REMARK 3 S31: -0.1817 S32: 0.0697 S33: 0.1381 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3410 -10.1600 30.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: -0.0622 REMARK 3 T33: -0.0398 T12: 0.0100 REMARK 3 T13: 0.0129 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 4.0287 L22: 0.0046 REMARK 3 L33: 4.3305 L12: -0.0248 REMARK 3 L13: 0.1343 L23: -0.1402 REMARK 3 S TENSOR REMARK 3 S11: -0.1485 S12: -0.1444 S13: -0.4135 REMARK 3 S21: -0.2576 S22: -0.1058 S23: 0.1335 REMARK 3 S31: 0.2063 S32: 0.4415 S33: 0.2543 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4000 -19.3270 29.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.4052 T22: 0.4096 REMARK 3 T33: 0.1306 T12: -0.0648 REMARK 3 T13: 0.0924 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 5.1081 L22: 4.8456 REMARK 3 L33: 4.4923 L12: -2.1035 REMARK 3 L13: -4.7405 L23: 2.5601 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0294 S13: -0.3984 REMARK 3 S21: 0.9527 S22: 0.2432 S23: 0.4797 REMARK 3 S31: 2.4730 S32: 1.1238 S33: -0.2721 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0310 -2.3060 36.8150 REMARK 3 T TENSOR REMARK 3 T11: -0.0900 T22: 0.1023 REMARK 3 T33: -0.1398 T12: -0.0194 REMARK 3 T13: 0.0180 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.5679 L22: 2.3769 REMARK 3 L33: 7.5816 L12: 0.8179 REMARK 3 L13: 0.5753 L23: 2.6269 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.2711 S13: -0.2835 REMARK 3 S21: -0.0259 S22: -0.0168 S23: 0.0743 REMARK 3 S31: -0.2463 S32: 0.5048 S33: 0.0632 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NR9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 0.1M CITRATE, PH 6.0, REMARK 280 0.8M AMMONIUM ACETATE, 15% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.64400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.52350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.64400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.52350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -12.82309 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.35425 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 196 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 -107.45 -94.67 REMARK 500 ALA A 6 1.09 54.94 REMARK 500 GLN A 7 -57.79 -163.07 REMARK 500 LEU A 28 53.58 -116.20 REMARK 500 PHE A 30 129.76 -173.26 REMARK 500 LEU A 132 -96.98 -84.52 REMARK 500 ASN A 133 32.50 -66.41 REMARK 500 HIS A 134 99.71 -30.50 REMARK 500 HIS A 135 -61.99 -173.25 REMARK 500 LEU A 136 -1.57 -52.05 REMARK 500 LEU A 139 143.21 73.98 REMARK 500 PRO A 140 -83.43 -60.25 REMARK 500 GLU A 141 -31.85 -160.41 REMARK 500 LEU A 147 33.62 -56.62 REMARK 500 PHE A 155 -31.14 -143.25 REMARK 500 PRO A 158 111.05 -20.80 REMARK 500 PHE A 160 -92.89 -137.16 REMARK 500 GLU A 163 66.72 0.28 REMARK 500 MET A 164 -63.82 -165.18 REMARK 500 LEU A 193 43.02 -107.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA6 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA6 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA6 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQE A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQE A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IC8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E.COLI GLPG DBREF 2NR9 A 1 192 UNP P44783 GLPG_HAEIN 1 192 SEQADV 2NR9 GLU A 2 UNP P44783 LYS 2 ENGINEERED MUTATION SEQADV 2NR9 ILE A 24 UNP P44783 LEU 24 ENGINEERED MUTATION SEQADV 2NR9 LEU A 193 UNP P44783 CLONING ARTIFACT SEQADV 2NR9 VAL A 194 UNP P44783 CLONING ARTIFACT SEQADV 2NR9 PRO A 195 UNP P44783 CLONING ARTIFACT SEQADV 2NR9 ARG A 196 UNP P44783 CLONING ARTIFACT SEQRES 1 A 196 MET GLU ASN PHE LEU ALA GLN GLN GLY LYS ILE THR LEU SEQRES 2 A 196 ILE LEU THR ALA LEU CYS VAL LEU ILE TYR ILE ALA GLN SEQRES 3 A 196 GLN LEU GLY PHE GLU ASP ASP ILE MET TYR LEU MET HIS SEQRES 4 A 196 TYR PRO ALA TYR GLU GLU GLN ASP SER GLU VAL TRP ARG SEQRES 5 A 196 TYR ILE SER HIS THR LEU VAL HIS LEU SER ASN LEU HIS SEQRES 6 A 196 ILE LEU PHE ASN LEU SER TRP PHE PHE ILE PHE GLY GLY SEQRES 7 A 196 MET ILE GLU ARG THR PHE GLY SER VAL LYS LEU LEU MET SEQRES 8 A 196 LEU TYR VAL VAL ALA SER ALA ILE THR GLY TYR VAL GLN SEQRES 9 A 196 ASN TYR VAL SER GLY PRO ALA PHE PHE GLY LEU SER GLY SEQRES 10 A 196 VAL VAL TYR ALA VAL LEU GLY TYR VAL PHE ILE ARG ASP SEQRES 11 A 196 LYS LEU ASN HIS HIS LEU PHE ASP LEU PRO GLU GLY PHE SEQRES 12 A 196 PHE THR MET LEU LEU VAL GLY ILE ALA LEU GLY PHE ILE SEQRES 13 A 196 SER PRO LEU PHE GLY VAL GLU MET GLY ASN ALA ALA HIS SEQRES 14 A 196 ILE SER GLY LEU ILE VAL GLY LEU ILE TRP GLY PHE ILE SEQRES 15 A 196 ASP SER LYS LEU ARG LYS ASN SER LEU GLU LEU VAL PRO SEQRES 16 A 196 ARG HET PA6 A 201 18 HET PA6 A 202 18 HET PA6 A 203 18 HET PQE A 204 37 HET PQE A 205 47 HETNAM PA6 (R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE HETNAM PQE 3,6,12,15,18,21,24-HEPTAOXAHEXATRIACONTAN-1-OL HETSYN PA6 PHOSPHATIDIC ACID HETSYN PQE ANAPOE-C12E8 FORMUL 2 PA6 3(C9 H17 O8 P) FORMUL 5 PQE 2(C29 H60 O8) FORMUL 7 HOH *62(H2 O) HELIX 1 1 GLY A 9 LEU A 28 1 20 HELIX 2 2 PHE A 30 HIS A 39 1 10 HELIX 3 3 TYR A 43 VAL A 50 5 8 HELIX 4 4 TRP A 51 HIS A 56 1 6 HELIX 5 5 THR A 57 VAL A 59 5 3 HELIX 6 6 SER A 62 GLY A 85 1 24 HELIX 7 7 GLY A 85 GLY A 109 1 25 HELIX 8 8 LEU A 115 LEU A 132 1 18 HELIX 9 9 ALA A 152 SER A 157 1 6 HELIX 10 10 GLY A 165 GLU A 192 1 28 SITE 1 AC1 3 MET A 38 SER A 55 PQE A 205 SITE 1 AC2 4 TYR A 102 LYS A 185 HOH A 264 HOH A 265 SITE 1 AC3 4 MET A 146 ILE A 182 LEU A 186 HOH A 261 SITE 1 AC4 9 LYS A 88 VAL A 103 PHE A 127 ILE A 128 SITE 2 AC4 9 ASN A 166 SER A 171 TRP A 179 ILE A 182 SITE 3 AC4 9 ASP A 183 SITE 1 AC5 14 LYS A 10 LEU A 13 ILE A 14 ALA A 17 SITE 2 AC5 14 LEU A 21 TRP A 51 ILE A 54 SER A 62 SITE 3 AC5 14 ASN A 63 ILE A 66 LEU A 67 ILE A 75 SITE 4 AC5 14 GLU A 141 PA6 A 201 CRYST1 121.288 35.047 52.931 90.00 104.02 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008245 0.000000 0.002059 0.00000 SCALE2 0.000000 0.028533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019473 0.00000