PDB Short entry for 2NTZ HEADER CELL CYCLE/DNA 08-NOV-06 2NTZ TITLE STRUCTURE OF A PARB-DNA COMPLEX REVEALS A DOUBLE B-BOX INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*GP*TP*GP*AP*AP*AP*TP*CP*GP*CP*CP*AP*CP*GP*A)-3'; COMPND 3 CHAIN: Y, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*CP*GP*TP*GP*GP*CP*GP*AP*TP*TP*TP*CP*AP*CP*G)-3'; COMPND 7 CHAIN: W, U; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PARB; COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: RESIDUES 142-333; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 7 ORGANISM_TAXID: 10678; SOURCE 8 GENE: PARB; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PARTITION, SEGREGATION, PARB, PARA, CELL CYCLE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,A.MANSOOR,B.E.FUNNELL REVDAT 4 15-NOV-23 2NTZ 1 REMARK REVDAT 3 30-AUG-23 2NTZ 1 SEQADV LINK REVDAT 2 09-DEC-08 2NTZ 1 JRNL VERSN REVDAT 1 20-FEB-07 2NTZ 0 JRNL AUTH M.A.SCHUMACHER,A.MANSOOR,B.E.FUNNELL JRNL TITL STRUCTURE OF A FOUR-WAY BRIDGED PARB-DNA COMPLEX PROVIDES JRNL TITL 2 INSIGHT INTO P1 SEGROSOME ASSEMBLY. JRNL REF J.BIOL.CHEM. V. 282 10456 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17293348 JRNL DOI 10.1074/JBC.M610603200 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5132409.060 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.288 REMARK 3 FREE R VALUE : 0.336 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2172 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 109 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2844 REMARK 3 NUCLEIC ACID ATOMS : 1300 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 145.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.10000 REMARK 3 B22 (A**2) : 4.10000 REMARK 3 B33 (A**2) : -8.21000 REMARK 3 B12 (A**2) : 13.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.61 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 32.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.940 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.18 REMARK 3 BSOL : 65.65 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.989 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15703 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 129.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1ZX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, MES 6.5, MAGNESIUM CHLORIDE, REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.29333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.58667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.58667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.29333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y, W, E, U, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 142 REMARK 465 VAL A 143 REMARK 465 LYS A 223 REMARK 465 ASN A 224 REMARK 465 GLY A 271 REMARK 465 SER A 272 REMARK 465 LYS A 273 REMARK 465 ASP A 274 REMARK 465 PRO A 333 REMARK 465 ASP B 142 REMARK 465 VAL B 143 REMARK 465 GLN B 144 REMARK 465 THR B 145 REMARK 465 ALA B 146 REMARK 465 LEU B 147 REMARK 465 GLN B 148 REMARK 465 HIS B 149 REMARK 465 LYS B 270 REMARK 465 GLY B 271 REMARK 465 SER B 272 REMARK 465 LYS B 273 REMARK 465 ASP B 274 REMARK 465 LEU B 327 REMARK 465 ASP B 328 REMARK 465 LYS B 329 REMARK 465 LYS B 330 REMARK 465 PRO B 331 REMARK 465 LYS B 332 REMARK 465 PRO B 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 295 N GLY A 297 2.05 REMARK 500 O ASP A 218 N MSE A 220 2.05 REMARK 500 O LYS A 211 N LEU A 213 2.10 REMARK 500 O THR B 279 N LEU B 281 2.11 REMARK 500 O ALA A 197 N PHE A 199 2.17 REMARK 500 O ASP B 240 OG SER B 243 2.18 REMARK 500 O LEU A 257 N LEU A 259 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 282 CB TRP B 282 CG -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT Y 31 O3' - P - OP1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DT Y 31 C5' - C4' - O4' ANGL. DEV. = -12.6 DEGREES REMARK 500 SER A 150 N - CA - C ANGL. DEV. = -28.0 DEGREES REMARK 500 LEU A 327 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO A 331 C - N - CA ANGL. DEV. = 28.7 DEGREES REMARK 500 PRO A 331 C - N - CD ANGL. DEV. = -34.0 DEGREES REMARK 500 PRO B 200 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 292 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 146 143.37 175.93 REMARK 500 LEU A 147 130.03 91.89 REMARK 500 GLN A 148 -135.34 -121.20 REMARK 500 HIS A 149 -12.28 154.23 REMARK 500 LEU A 156 -58.19 -27.08 REMARK 500 ALA A 172 -5.23 -52.24 REMARK 500 GLN A 179 -43.17 -28.97 REMARK 500 ALA A 180 -75.76 -52.76 REMARK 500 ALA A 185 -86.24 -53.33 REMARK 500 LEU A 186 -47.43 -27.91 REMARK 500 PRO A 192 109.07 -42.18 REMARK 500 LEU A 198 -25.18 -26.36 REMARK 500 PRO A 200 -70.80 -77.55 REMARK 500 GLN A 202 -1.86 -55.31 REMARK 500 SER A 208 -39.57 -26.90 REMARK 500 LYS A 211 -77.60 -54.48 REMARK 500 THR A 212 0.31 -40.72 REMARK 500 GLU A 219 -0.22 -35.09 REMARK 500 GLN A 232 -77.08 -79.37 REMARK 500 ASN A 233 -32.92 -29.52 REMARK 500 SER A 235 -45.61 -24.86 REMARK 500 PRO A 236 -72.55 -64.47 REMARK 500 ASP A 240 3.40 -58.06 REMARK 500 SER A 243 -85.32 -61.24 REMARK 500 ILE A 244 97.94 -6.06 REMARK 500 GLU A 245 -83.48 -31.29 REMARK 500 MSE A 247 117.04 156.17 REMARK 500 ALA A 248 -152.53 -111.13 REMARK 500 GLU A 249 70.82 -69.47 REMARK 500 ASP A 250 -49.74 -142.84 REMARK 500 LYS A 253 -71.15 -45.24 REMARK 500 ASN A 254 -7.77 -48.43 REMARK 500 LEU A 257 -72.17 -63.76 REMARK 500 ARG A 258 -9.24 -35.70 REMARK 500 LEU A 259 -61.62 -106.69 REMARK 500 SER A 276 153.78 -43.19 REMARK 500 ASP A 286 168.54 -44.28 REMARK 500 LYS A 296 26.56 -27.69 REMARK 500 ARG A 298 33.03 -96.88 REMARK 500 SER A 301 149.55 -174.70 REMARK 500 ARG A 306 91.05 56.04 REMARK 500 LYS A 309 -13.18 -49.06 REMARK 500 GLN A 312 -80.85 -47.83 REMARK 500 HIS A 321 -71.51 -56.34 REMARK 500 LEU A 327 129.43 -176.76 REMARK 500 LYS A 330 -163.11 -114.02 REMARK 500 LYS B 169 -78.01 -39.85 REMARK 500 GLU B 175 -9.46 -143.97 REMARK 500 PRO B 192 101.97 -58.19 REMARK 500 GLN B 202 -15.12 -46.96 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC Y 32 0.07 SIDE CHAIN REMARK 500 DA Y 36 0.06 SIDE CHAIN REMARK 500 DG W 6 0.09 SIDE CHAIN REMARK 500 DT W 13 0.09 SIDE CHAIN REMARK 500 DG W 17 0.06 SIDE CHAIN REMARK 500 DG E 27 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZX4 RELATED DB: PDB REMARK 900 PARB-DNA DBREF 2NTZ A 142 333 UNP Q38420 Q38420_BPP1 142 333 DBREF 2NTZ B 142 333 UNP Q38420 Q38420_BPP1 142 333 DBREF 2NTZ Y 24 39 PDB 2NTZ 2NTZ 24 39 DBREF 2NTZ W 2 17 PDB 2NTZ 2NTZ 2 17 DBREF 2NTZ E 24 39 PDB 2NTZ 2NTZ 24 39 DBREF 2NTZ U 2 17 PDB 2NTZ 2NTZ 2 17 SEQADV 2NTZ MSE A 159 UNP Q38420 MET 159 MODIFIED RESIDUE SEQADV 2NTZ MSE A 161 UNP Q38420 MET 161 MODIFIED RESIDUE SEQADV 2NTZ MSE A 166 UNP Q38420 MET 166 MODIFIED RESIDUE SEQADV 2NTZ MSE A 220 UNP Q38420 MET 220 MODIFIED RESIDUE SEQADV 2NTZ MSE A 247 UNP Q38420 MET 247 MODIFIED RESIDUE SEQADV 2NTZ MSE A 318 UNP Q38420 MET 318 MODIFIED RESIDUE SEQADV 2NTZ MSE B 159 UNP Q38420 MET 159 MODIFIED RESIDUE SEQADV 2NTZ MSE B 161 UNP Q38420 MET 161 MODIFIED RESIDUE SEQADV 2NTZ MSE B 166 UNP Q38420 MET 166 MODIFIED RESIDUE SEQADV 2NTZ MSE B 220 UNP Q38420 MET 220 MODIFIED RESIDUE SEQADV 2NTZ MSE B 247 UNP Q38420 MET 247 MODIFIED RESIDUE SEQADV 2NTZ MSE B 318 UNP Q38420 MET 318 MODIFIED RESIDUE SEQRES 1 Y 16 DC DG DT DG DA DA DA DT DC DG DC DC DA SEQRES 2 Y 16 DC DG DA SEQRES 1 W 16 DT DC DG DT DG DG DC DG DA DT DT DT DC SEQRES 2 W 16 DA DC DG SEQRES 1 E 16 DC DG DT DG DA DA DA DT DC DG DC DC DA SEQRES 2 E 16 DC DG DA SEQRES 1 U 16 DT DC DG DT DG DG DC DG DA DT DT DT DC SEQRES 2 U 16 DA DC DG SEQRES 1 A 192 ASP VAL GLN THR ALA LEU GLN HIS SER ILE ARG GLU ILE SEQRES 2 A 192 GLY LEU ARG LEU MSE ARG MSE LYS ASN ASP GLY MSE SER SEQRES 3 A 192 GLN LYS ASP ILE ALA ALA LYS GLU GLY LEU SER GLN ALA SEQRES 4 A 192 LYS VAL THR ARG ALA LEU GLN ALA ALA SER ALA PRO GLU SEQRES 5 A 192 GLU LEU VAL ALA LEU PHE PRO VAL GLN SER GLU LEU THR SEQRES 6 A 192 PHE SER ASP TYR LYS THR LEU CYS ALA VAL GLY ASP GLU SEQRES 7 A 192 MSE GLY ASN LYS ASN LEU GLU PHE ASP GLN LEU ILE GLN SEQRES 8 A 192 ASN ILE SER PRO GLU ILE ASN ASP ILE LEU SER ILE GLU SEQRES 9 A 192 GLU MSE ALA GLU ASP GLU VAL LYS ASN LYS ILE LEU ARG SEQRES 10 A 192 LEU ILE THR LYS GLU ALA SER LEU LEU THR ASP LYS GLY SEQRES 11 A 192 SER LYS ASP LYS SER VAL VAL THR GLU LEU TRP LYS PHE SEQRES 12 A 192 GLU ASP LYS ASP ARG PHE ALA ARG LYS ARG VAL LYS GLY SEQRES 13 A 192 ARG ALA PHE SER TYR GLU PHE ASN ARG LEU SER LYS GLU SEQRES 14 A 192 LEU GLN GLU GLU LEU ASP ARG MSE ILE GLY HIS ILE LEU SEQRES 15 A 192 ARG LYS SER LEU ASP LYS LYS PRO LYS PRO SEQRES 1 B 192 ASP VAL GLN THR ALA LEU GLN HIS SER ILE ARG GLU ILE SEQRES 2 B 192 GLY LEU ARG LEU MSE ARG MSE LYS ASN ASP GLY MSE SER SEQRES 3 B 192 GLN LYS ASP ILE ALA ALA LYS GLU GLY LEU SER GLN ALA SEQRES 4 B 192 LYS VAL THR ARG ALA LEU GLN ALA ALA SER ALA PRO GLU SEQRES 5 B 192 GLU LEU VAL ALA LEU PHE PRO VAL GLN SER GLU LEU THR SEQRES 6 B 192 PHE SER ASP TYR LYS THR LEU CYS ALA VAL GLY ASP GLU SEQRES 7 B 192 MSE GLY ASN LYS ASN LEU GLU PHE ASP GLN LEU ILE GLN SEQRES 8 B 192 ASN ILE SER PRO GLU ILE ASN ASP ILE LEU SER ILE GLU SEQRES 9 B 192 GLU MSE ALA GLU ASP GLU VAL LYS ASN LYS ILE LEU ARG SEQRES 10 B 192 LEU ILE THR LYS GLU ALA SER LEU LEU THR ASP LYS GLY SEQRES 11 B 192 SER LYS ASP LYS SER VAL VAL THR GLU LEU TRP LYS PHE SEQRES 12 B 192 GLU ASP LYS ASP ARG PHE ALA ARG LYS ARG VAL LYS GLY SEQRES 13 B 192 ARG ALA PHE SER TYR GLU PHE ASN ARG LEU SER LYS GLU SEQRES 14 B 192 LEU GLN GLU GLU LEU ASP ARG MSE ILE GLY HIS ILE LEU SEQRES 15 B 192 ARG LYS SER LEU ASP LYS LYS PRO LYS PRO MODRES 2NTZ MSE A 159 MET SELENOMETHIONINE MODRES 2NTZ MSE A 161 MET SELENOMETHIONINE MODRES 2NTZ MSE A 166 MET SELENOMETHIONINE MODRES 2NTZ MSE A 220 MET SELENOMETHIONINE MODRES 2NTZ MSE A 247 MET SELENOMETHIONINE MODRES 2NTZ MSE A 318 MET SELENOMETHIONINE MODRES 2NTZ MSE B 159 MET SELENOMETHIONINE MODRES 2NTZ MSE B 161 MET SELENOMETHIONINE MODRES 2NTZ MSE B 166 MET SELENOMETHIONINE MODRES 2NTZ MSE B 220 MET SELENOMETHIONINE MODRES 2NTZ MSE B 247 MET SELENOMETHIONINE MODRES 2NTZ MSE B 318 MET SELENOMETHIONINE HET MSE A 159 8 HET MSE A 161 8 HET MSE A 166 8 HET MSE A 220 8 HET MSE A 247 8 HET MSE A 318 8 HET MSE B 159 8 HET MSE B 161 8 HET MSE B 166 8 HET MSE B 220 8 HET MSE B 247 8 HET MSE B 318 8 HETNAM MSE SELENOMETHIONINE FORMUL 5 MSE 12(C5 H11 N O2 SE) HELIX 1 1 SER A 150 ASP A 164 1 15 HELIX 2 2 SER A 167 GLU A 175 1 9 HELIX 3 3 SER A 178 SER A 190 1 13 HELIX 4 4 PRO A 192 LEU A 198 1 7 HELIX 5 5 VAL A 201 LEU A 205 5 5 HELIX 6 6 THR A 206 GLU A 219 1 14 HELIX 7 7 LEU A 225 ASP A 240 1 16 HELIX 8 8 VAL A 252 THR A 261 1 10 HELIX 9 9 ALA A 264 ASP A 269 1 6 HELIX 10 10 SER A 308 SER A 326 1 19 HELIX 11 11 SER B 150 ARG B 160 1 11 HELIX 12 12 SER B 167 GLU B 175 1 9 HELIX 13 13 SER B 178 ALA B 189 1 12 HELIX 14 14 PRO B 192 PHE B 199 1 8 HELIX 15 15 VAL B 201 LEU B 205 5 5 HELIX 16 16 THR B 206 GLU B 219 1 14 HELIX 17 17 LYS B 223 LEU B 242 1 20 HELIX 18 18 ALA B 248 LEU B 267 1 20 HELIX 19 19 SER B 308 LYS B 325 1 18 SHEET 1 A 6 VAL A 278 GLU A 280 0 SHEET 2 A 6 PHE A 290 ARG A 294 -1 O LYS A 293 N THR A 279 SHEET 3 A 6 SER A 301 ASN A 305 -1 O ASN A 305 N PHE A 290 SHEET 4 A 6 ALA B 299 ASN B 305 -1 O TYR B 302 N TYR A 302 SHEET 5 A 6 PHE B 290 LYS B 296 -1 N ARG B 292 O GLU B 303 SHEET 6 A 6 VAL B 277 VAL B 278 -1 N VAL B 277 O VAL B 295 LINK C LEU A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N ARG A 160 1555 1555 1.32 LINK C ARG A 160 N MSE A 161 1555 1555 1.33 LINK C MSE A 161 N LYS A 162 1555 1555 1.33 LINK C GLY A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N SER A 167 1555 1555 1.33 LINK C GLU A 219 N MSE A 220 1555 1555 1.32 LINK C MSE A 220 N GLY A 221 1555 1555 1.33 LINK C GLU A 246 N MSE A 247 1555 1555 1.33 LINK C MSE A 247 N ALA A 248 1555 1555 1.33 LINK C ARG A 317 N MSE A 318 1555 1555 1.32 LINK C MSE A 318 N ILE A 319 1555 1555 1.33 LINK C LEU B 158 N MSE B 159 1555 1555 1.33 LINK C MSE B 159 N ARG B 160 1555 1555 1.33 LINK C ARG B 160 N MSE B 161 1555 1555 1.33 LINK C MSE B 161 N LYS B 162 1555 1555 1.33 LINK C GLY B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N SER B 167 1555 1555 1.34 LINK C GLU B 219 N MSE B 220 1555 1555 1.33 LINK C MSE B 220 N GLY B 221 1555 1555 1.33 LINK C GLU B 246 N MSE B 247 1555 1555 1.33 LINK C MSE B 247 N ALA B 248 1555 1555 1.34 LINK C ARG B 317 N MSE B 318 1555 1555 1.33 LINK C MSE B 318 N ILE B 319 1555 1555 1.32 CISPEP 1 LYS A 330 PRO A 331 0 1.61 CRYST1 144.420 144.420 78.880 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006924 0.003998 0.000000 0.00000 SCALE2 0.000000 0.007995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012677 0.00000