PDB Short entry for 2NV0 HEADER TRANSFERASE 10-NOV-06 2NV0 TITLE STRUCTURE OF THE GLUTAMINASE SUBUNIT PDX2 (YAAE) OF PLP SYNTHASE FROM TITLE 2 BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE AMIDOTRANSFERASE SUBUNIT PDXT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTAMINE AMIDOTRANSFERASE GLUTAMINASE SUBUNIT PDXT; COMPND 5 EC: 2.6.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: STRAIN 168; SOURCE 5 GENE: PDXT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 [DE3]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET24B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-BSPDX2, PET-BSYAAE KEYWDS 3-LAYER(ABA) SANDWICH, ROSSMANN FOLD, GLUTAMINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.STROHMEIER,I.TEWS,I.SINNING REVDAT 5 25-OCT-23 2NV0 1 REMARK REVDAT 4 13-JUL-11 2NV0 1 VERSN REVDAT 3 24-FEB-09 2NV0 1 VERSN REVDAT 2 19-DEC-06 2NV0 1 JRNL REVDAT 1 05-DEC-06 2NV0 0 JRNL AUTH M.STROHMEIER,T.RASCHLE,J.MAZURKIEWICZ,K.RIPPE,I.SINNING, JRNL AUTH 2 T.B.FITZPATRICK,I.TEWS JRNL TITL STRUCTURE OF A BACTERIAL PYRIDOXAL 5'-PHOSPHATE SYNTHASE JRNL TITL 2 COMPLEX JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 19284 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17159152 JRNL DOI 10.1073/PNAS.0604950103 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 43316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2310 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3171 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3042 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2083 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4111 ; 1.706 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5094 ; 2.007 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 5.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;35.867 ;24.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;14.578 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3354 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 642 ; 0.249 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2224 ; 0.239 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1482 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1670 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 294 ; 0.296 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.360 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.363 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2054 ; 1.712 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 775 ; 0.188 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3042 ; 2.093 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1210 ; 3.017 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 4.556 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9574 12.5209 -23.8593 REMARK 3 T TENSOR REMARK 3 T11: -0.0522 T22: -0.0094 REMARK 3 T33: -0.0323 T12: 0.0011 REMARK 3 T13: -0.0025 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.6526 L22: 1.0797 REMARK 3 L33: 1.1104 L12: -0.1929 REMARK 3 L13: 0.1790 L23: -0.2387 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: -0.0011 S13: -0.0100 REMARK 3 S21: 0.0516 S22: 0.0159 S23: 0.0547 REMARK 3 S31: -0.0529 S32: -0.1104 S33: -0.0119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 194 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2143 -9.0814 -5.0789 REMARK 3 T TENSOR REMARK 3 T11: -0.0051 T22: -0.0549 REMARK 3 T33: -0.0331 T12: 0.0130 REMARK 3 T13: 0.0005 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.6582 L22: 1.0345 REMARK 3 L33: 0.8695 L12: -0.0013 REMARK 3 L13: -0.0610 L23: 0.1561 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0145 S13: -0.0014 REMARK 3 S21: 0.1242 S22: 0.0057 S23: -0.0348 REMARK 3 S31: -0.0268 S32: 0.0074 S33: 0.0140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9340 REMARK 200 MONOCHROMATOR : ESRF REMARK 200 OPTICS : ESRF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1R9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.4% PEG 8000, 6% ETHYLENE GLYCOL, REMARK 280 100MM CACODYLIC ACID, PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.72000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.64250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.80300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.64250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.80300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 91 REMARK 465 SER A 92 REMARK 465 ASP A 93 REMARK 465 ASN A 94 REMARK 465 VAL A 196 REMARK 465 LEU B 9 REMARK 465 GLN B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 90 REMARK 465 GLY B 91 REMARK 465 SER B 92 REMARK 465 ASP B 93 REMARK 465 LEU B 195 REMARK 465 VAL B 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 ASN B 94 CB CG OD1 ND2 REMARK 470 GLN B 192 CG CD OE1 NE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 127 O HOH A 380 1.52 REMARK 500 SG CYS B 79 O HOH B 264 1.53 REMARK 500 OE2 GLU B 188 O HOH B 340 1.73 REMARK 500 NH2 ARG A 14 O HOH A 306 1.76 REMARK 500 OE2 GLU A 63 O HOH A 339 1.87 REMARK 500 SG CYS B 79 O HOH B 264 2.09 REMARK 500 O HOH B 218 O HOH B 286 2.13 REMARK 500 O HOH A 215 O HOH A 347 2.17 REMARK 500 O HOH B 235 O HOH B 284 2.19 REMARK 500 OE2 GLU A 63 O HOH A 339 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 90 OE1 GLN B 112 3554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS B 79 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 45 -122.50 -97.92 REMARK 500 CYS A 79 -120.78 53.22 REMARK 500 ALA A 86 -153.77 -111.23 REMARK 500 HIS A 96 -161.80 63.99 REMARK 500 LEU A 173 44.88 -88.93 REMARK 500 SER B 49 -30.17 -28.95 REMARK 500 CYS B 79 -130.46 49.42 REMARK 500 ALA B 86 -140.67 -110.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R9G RELATED DB: PDB REMARK 900 RELATED ID: 2NV1 RELATED DB: PDB REMARK 900 RELATED ID: 2NV2 RELATED DB: PDB DBREF 2NV0 A 1 196 UNP P37528 PDXT_BACSU 1 196 DBREF 2NV0 B 1 196 UNP P37528 PDXT_BACSU 1 196 SEQRES 1 A 196 MET LEU THR ILE GLY VAL LEU GLY LEU GLN GLY ALA VAL SEQRES 2 A 196 ARG GLU HIS ILE HIS ALA ILE GLU ALA CYS GLY ALA ALA SEQRES 3 A 196 GLY LEU VAL VAL LYS ARG PRO GLU GLN LEU ASN GLU VAL SEQRES 4 A 196 ASP GLY LEU ILE LEU PRO GLY GLY GLU SER THR THR MET SEQRES 5 A 196 ARG ARG LEU ILE ASP THR TYR GLN PHE MET GLU PRO LEU SEQRES 6 A 196 ARG GLU PHE ALA ALA GLN GLY LYS PRO MET PHE GLY THR SEQRES 7 A 196 CYS ALA GLY LEU ILE ILE LEU ALA LYS GLU ILE ALA GLY SEQRES 8 A 196 SER ASP ASN PRO HIS LEU GLY LEU LEU ASN VAL VAL VAL SEQRES 9 A 196 GLU ARG ASN SER PHE GLY ARG GLN VAL ASP SER PHE GLU SEQRES 10 A 196 ALA ASP LEU THR ILE LYS GLY LEU ASP GLU PRO PHE THR SEQRES 11 A 196 GLY VAL PHE ILE ARG ALA PRO HIS ILE LEU GLU ALA GLY SEQRES 12 A 196 GLU ASN VAL GLU VAL LEU SER GLU HIS ASN GLY ARG ILE SEQRES 13 A 196 VAL ALA ALA LYS GLN GLY GLN PHE LEU GLY CYS SER PHE SEQRES 14 A 196 HIS PRO GLU LEU THR GLU ASP HIS ARG VAL THR GLN LEU SEQRES 15 A 196 PHE VAL GLU MET VAL GLU GLU TYR LYS GLN LYS ALA LEU SEQRES 16 A 196 VAL SEQRES 1 B 196 MET LEU THR ILE GLY VAL LEU GLY LEU GLN GLY ALA VAL SEQRES 2 B 196 ARG GLU HIS ILE HIS ALA ILE GLU ALA CYS GLY ALA ALA SEQRES 3 B 196 GLY LEU VAL VAL LYS ARG PRO GLU GLN LEU ASN GLU VAL SEQRES 4 B 196 ASP GLY LEU ILE LEU PRO GLY GLY GLU SER THR THR MET SEQRES 5 B 196 ARG ARG LEU ILE ASP THR TYR GLN PHE MET GLU PRO LEU SEQRES 6 B 196 ARG GLU PHE ALA ALA GLN GLY LYS PRO MET PHE GLY THR SEQRES 7 B 196 CYS ALA GLY LEU ILE ILE LEU ALA LYS GLU ILE ALA GLY SEQRES 8 B 196 SER ASP ASN PRO HIS LEU GLY LEU LEU ASN VAL VAL VAL SEQRES 9 B 196 GLU ARG ASN SER PHE GLY ARG GLN VAL ASP SER PHE GLU SEQRES 10 B 196 ALA ASP LEU THR ILE LYS GLY LEU ASP GLU PRO PHE THR SEQRES 11 B 196 GLY VAL PHE ILE ARG ALA PRO HIS ILE LEU GLU ALA GLY SEQRES 12 B 196 GLU ASN VAL GLU VAL LEU SER GLU HIS ASN GLY ARG ILE SEQRES 13 B 196 VAL ALA ALA LYS GLN GLY GLN PHE LEU GLY CYS SER PHE SEQRES 14 B 196 HIS PRO GLU LEU THR GLU ASP HIS ARG VAL THR GLN LEU SEQRES 15 B 196 PHE VAL GLU MET VAL GLU GLU TYR LYS GLN LYS ALA LEU SEQRES 16 B 196 VAL FORMUL 3 HOH *405(H2 O) HELIX 1 1 VAL A 13 CYS A 23 1 11 HELIX 2 2 ARG A 32 VAL A 39 5 8 HELIX 3 3 GLU A 48 TYR A 59 1 12 HELIX 4 4 PHE A 61 GLN A 71 1 11 HELIX 5 5 CYS A 79 ALA A 86 1 8 HELIX 6 6 HIS A 177 ALA A 194 1 18 HELIX 7 7 ALA B 12 CYS B 23 1 12 HELIX 8 8 ARG B 32 VAL B 39 5 8 HELIX 9 9 GLU B 48 GLN B 60 1 13 HELIX 10 10 PHE B 61 GLN B 71 1 11 HELIX 11 11 ALA B 80 ALA B 86 1 7 HELIX 12 12 HIS B 177 ALA B 194 1 18 SHEET 1 A 7 ALA A 26 VAL A 30 0 SHEET 2 A 7 THR A 3 LEU A 7 1 N ILE A 4 O ALA A 26 SHEET 3 A 7 GLY A 41 LEU A 44 1 O ILE A 43 N GLY A 5 SHEET 4 A 7 MET A 75 THR A 78 1 O PHE A 76 N LEU A 44 SHEET 5 A 7 PHE A 164 CYS A 167 1 O LEU A 165 N MET A 75 SHEET 6 A 7 ARG A 155 GLN A 161 -1 N GLN A 161 O PHE A 164 SHEET 7 A 7 GLU A 147 HIS A 152 -1 N GLU A 147 O LYS A 160 SHEET 1 B 2 VAL A 102 GLU A 105 0 SHEET 2 B 2 HIS A 138 ALA A 142 -1 O LEU A 140 N VAL A 103 SHEET 1 C 2 SER A 115 LEU A 120 0 SHEET 2 C 2 PHE A 129 ILE A 134 -1 O PHE A 129 N LEU A 120 SHEET 1 D 7 ALA B 26 VAL B 30 0 SHEET 2 D 7 THR B 3 LEU B 7 1 N ILE B 4 O ALA B 26 SHEET 3 D 7 GLY B 41 LEU B 44 1 O GLY B 41 N GLY B 5 SHEET 4 D 7 MET B 75 THR B 78 1 O PHE B 76 N LEU B 44 SHEET 5 D 7 PHE B 164 CYS B 167 1 O LEU B 165 N MET B 75 SHEET 6 D 7 ARG B 155 GLN B 161 -1 N GLN B 161 O PHE B 164 SHEET 7 D 7 GLU B 147 HIS B 152 -1 N GLU B 147 O LYS B 160 SHEET 1 E 2 VAL B 102 GLU B 105 0 SHEET 2 E 2 HIS B 138 ALA B 142 -1 O HIS B 138 N GLU B 105 SHEET 1 F 2 SER B 115 LEU B 120 0 SHEET 2 F 2 PHE B 129 ILE B 134 -1 O PHE B 133 N PHE B 116 CISPEP 1 ILE A 89 ALA A 90 0 25.21 CRYST1 45.440 81.606 117.285 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008526 0.00000