PDB Short entry for 2NV3 HEADER VIRAL PROTEIN 10-NOV-06 2NV3 TITLE SOLUTION STRUCTURE OF L8A MUTANT OF HIV-1 MYRISTOYLATED MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAG POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATRIX DOMAIN, RESIDUES 2-132; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS L8A MUTANT OF HIV-1 MYRISTOYLATED MATRIX PROTEIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.S.SAAD,E.LOELIGER,P.LUNCSFORD,M.LIRIANO,J.TAI,A.KIM,J.MILLER, AUTHOR 2 A.JOSHI,E.O.FREED,M.F.SUMMERS REVDAT 4 27-DEC-23 2NV3 1 REMARK REVDAT 3 20-OCT-21 2NV3 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2NV3 1 VERSN REVDAT 1 06-FEB-07 2NV3 0 JRNL AUTH J.S.SAAD,E.LOELIGER,P.LUNCSFORD,M.LIRIANO,J.TAI,A.KIM, JRNL AUTH 2 J.MILLER,A.JOSHI,E.O.FREED,M.F.SUMMERS JRNL TITL POINT MUTATIONS IN THE HIV-1 MATRIX PROTEIN TURN OFF THE JRNL TITL 2 MYRISTYL SWITCH. JRNL REF J.MOL.BIOL. V. 366 574 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17188710 JRNL DOI 10.1016/J.JMB.2006.11.068 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NV3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040337. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C, U-100% 15N] REMARK 210 HIV-1 L8A-MYRMA, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM NACL, 5 MM DTT, REMARK 210 90% H2O, 10% D2O; 1 MM [U-100% REMARK 210 15N] HIV-1 L8A-MYRMA, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM NACL, 5 REMARK 210 MM DTT, 90% H2O, 10% D2O; 1 MM REMARK 210 HIV-1 L8A-MYRMA, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM NACL, 5 MM DTT, REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 38.43 -167.68 REMARK 500 1 ALA A 8 -66.96 -179.58 REMARK 500 1 SER A 9 60.68 68.59 REMARK 500 1 PRO A 66 0.03 -69.75 REMARK 500 1 ARG A 91 47.39 70.86 REMARK 500 1 ALA A 115 35.65 -148.18 REMARK 500 1 VAL A 128 -176.26 -68.28 REMARK 500 1 GLN A 130 71.70 -157.60 REMARK 500 2 ARG A 4 71.27 47.47 REMARK 500 2 SER A 6 96.52 59.39 REMARK 500 2 ALA A 8 -71.06 -85.02 REMARK 500 2 SER A 9 61.59 65.16 REMARK 500 2 PRO A 66 0.06 -69.79 REMARK 500 2 THR A 70 39.16 -94.49 REMARK 500 2 SER A 72 -165.97 -79.61 REMARK 500 2 ARG A 91 -0.70 73.19 REMARK 500 2 ASP A 121 -61.47 -174.08 REMARK 500 3 SER A 6 30.50 -167.39 REMARK 500 3 VAL A 7 -49.49 -132.32 REMARK 500 3 ALA A 8 -70.89 -172.34 REMARK 500 3 SER A 9 63.87 68.67 REMARK 500 3 ILE A 34 -70.45 -69.07 REMARK 500 3 GLU A 105 -71.41 -71.36 REMARK 500 3 LYS A 114 -72.16 -95.15 REMARK 500 3 ALA A 119 46.84 -151.72 REMARK 500 3 ALA A 120 -42.64 -145.27 REMARK 500 4 ARG A 4 -168.52 50.06 REMARK 500 4 SER A 6 37.11 -172.40 REMARK 500 4 VAL A 7 -51.85 -123.87 REMARK 500 4 ALA A 8 -67.41 -179.58 REMARK 500 4 GLU A 52 48.75 -107.72 REMARK 500 4 THR A 53 107.42 179.40 REMARK 500 4 THR A 70 35.39 -143.19 REMARK 500 4 SER A 72 -174.15 -65.06 REMARK 500 4 GLU A 105 -71.61 -78.30 REMARK 500 4 GLN A 117 -47.29 -146.83 REMARK 500 4 ALA A 120 51.45 -109.72 REMARK 500 4 ASP A 121 -58.59 -150.51 REMARK 500 4 SER A 126 -179.00 -177.50 REMARK 500 4 GLN A 130 39.19 -173.84 REMARK 500 5 SER A 6 157.58 63.86 REMARK 500 5 VAL A 7 -73.12 -96.55 REMARK 500 5 GLU A 52 47.77 -98.93 REMARK 500 5 THR A 53 111.46 179.74 REMARK 500 5 SER A 72 -176.54 -59.48 REMARK 500 5 ALA A 120 41.01 -155.96 REMARK 500 5 ASN A 124 129.17 -173.46 REMARK 500 5 ASN A 131 174.53 61.21 REMARK 500 6 ALA A 3 -170.44 -60.60 REMARK 500 6 ARG A 4 -74.84 -52.53 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H3I RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN REMARK 900 RELATED ID: 2JMG RELATED DB: PDB REMARK 900 V7R MUTANT OF HIV-1 MYRMA DBREF 2NV3 A 2 132 UNP Q72497 Q72497_9HIV1 2 132 SEQADV 2NV3 ALA A 8 UNP Q72497 LEU 8 ENGINEERED MUTATION SEQRES 1 A 131 GLY ALA ARG ALA SER VAL ALA SER GLY GLY GLU LEU ASP SEQRES 2 A 131 LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 A 131 GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER ARG GLU SEQRES 4 A 131 LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU GLU THR SEQRES 5 A 131 SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU GLN PRO SEQRES 6 A 131 SER LEU GLN THR GLY SER GLU GLU LEU ARG SER LEU TYR SEQRES 7 A 131 ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN ARG ILE SEQRES 8 A 131 ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS ILE GLU SEQRES 9 A 131 GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN GLN ALA SEQRES 10 A 131 ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER GLN ASN SEQRES 11 A 131 TYR HET MYR A 1 42 HETNAM MYR MYRISTIC ACID FORMUL 2 MYR C14 H28 O2 HELIX 1 1 GLY A 10 GLU A 17 1 8 HELIX 2 2 LYS A 30 PHE A 44 1 15 HELIX 3 3 ASN A 47 GLU A 52 5 6 HELIX 4 4 THR A 53 GLN A 65 1 13 HELIX 5 5 PRO A 66 LEU A 68 5 3 HELIX 6 6 SER A 72 GLN A 90 1 19 HELIX 7 7 ASP A 96 LYS A 114 1 19 HELIX 8 8 ALA A 115 THR A 122 1 8 LINK C1 MYR A 1 N GLY A 2 1555 1555 1.33 SITE 1 AC1 7 GLY A 2 ARG A 4 TRP A 16 ILE A 34 SITE 2 AC1 7 LEU A 51 GLU A 52 LEU A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000