PDB Short entry for 2O38 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-NOV-06 2O38 TITLE PUTATIVE XRE FAMILY TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCHARACTERIZED CONSERVED SMALL PROTEIN COG560; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 GENE: RPA3824; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET KEYWDS ALPHA-BETA, HELIX-TURN-HELIX, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,O.KAGAN,A.EDWARDS,A.SAVCHENKO,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 18-OCT-17 2O38 1 REMARK REVDAT 3 13-JUL-11 2O38 1 VERSN REVDAT 2 24-FEB-09 2O38 1 VERSN REVDAT 1 02-JAN-07 2O38 0 JRNL AUTH Y.KIM,E.EVDOKIMOVA,O.KAGAN,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF PUTATIVE XRE FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 13593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1511 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 924 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.406 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1472 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1989 ; 1.505 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 6.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;34.302 ;22.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 278 ;18.352 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;21.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1109 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 795 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1034 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 132 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 973 ; 1.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1507 ; 1.416 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 544 ; 2.514 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 482 ; 3.876 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2920 30.0860 22.8850 REMARK 3 T TENSOR REMARK 3 T11: -0.0572 T22: -0.0991 REMARK 3 T33: -0.0726 T12: -0.0145 REMARK 3 T13: 0.0086 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 1.6297 L22: 2.1395 REMARK 3 L33: 5.5477 L12: 0.6464 REMARK 3 L13: -0.3190 L23: 0.0741 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: 0.1201 S13: -0.0103 REMARK 3 S21: -0.0470 S22: 0.1273 S23: 0.2103 REMARK 3 S31: 0.0670 S32: -0.3883 S33: -0.0447 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0140 27.5570 39.7090 REMARK 3 T TENSOR REMARK 3 T11: -0.0577 T22: -0.1024 REMARK 3 T33: -0.0961 T12: 0.0076 REMARK 3 T13: -0.0057 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.4291 L22: 1.8583 REMARK 3 L33: 5.0668 L12: 0.5011 REMARK 3 L13: -0.5370 L23: -1.9288 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: -0.1058 S13: 0.0022 REMARK 3 S21: 0.0308 S22: -0.0660 S23: -0.1503 REMARK 3 S31: -0.0969 S32: 0.1290 S33: 0.0556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2O38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 27.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXCD, SHELXD, MLPHARE, SOLVE, RESOLVE, REMARK 200 PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 21.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 4.6, 0.3M PPS, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.99700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.72950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.13800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.72950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.99700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.13800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ILE A 14 REMARK 465 THR A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 ILE A 18 REMARK 465 GLY A 19 REMARK 465 ASN A 20 REMARK 465 VAL A 21 REMARK 465 PHE A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 GLY A 26 REMARK 465 MSE A 27 REMARK 465 GLY A 117 REMARK 465 SER A 118 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 3 REMARK 465 LYS B 4 REMARK 465 SER B 5 REMARK 465 ILE B 6 REMARK 465 ASP B 7 REMARK 465 ARG B 8 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 ILE B 14 REMARK 465 THR B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 17 REMARK 465 ILE B 18 REMARK 465 GLY B 19 REMARK 465 ASN B 20 REMARK 465 VAL B 21 REMARK 465 PHE B 22 REMARK 465 ALA B 23 REMARK 465 ASP B 24 REMARK 465 LEU B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 117 REMARK 465 SER B 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 224 O HOH A 266 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 105 46.36 -97.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MSE B 27 PRO B 28 -34.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6187 RELATED DB: TARGETDB DBREF 2O38 A 1 116 UNP Q6N370 Q6N370_RHOPA 1 116 DBREF 2O38 B 1 116 UNP Q6N370 Q6N370_RHOPA 1 116 SEQADV 2O38 GLY A -1 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 HIS A 0 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 MSE A 1 UNP Q6N370 MET 1 MODIFIED RESIDUE SEQADV 2O38 MSE A 27 UNP Q6N370 MET 27 MODIFIED RESIDUE SEQADV 2O38 MSE A 85 UNP Q6N370 MET 85 MODIFIED RESIDUE SEQADV 2O38 GLY A 117 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 SER A 118 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 GLY B -1 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 HIS B 0 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 MSE B 1 UNP Q6N370 MET 1 MODIFIED RESIDUE SEQADV 2O38 MSE B 27 UNP Q6N370 MET 27 MODIFIED RESIDUE SEQADV 2O38 MSE B 85 UNP Q6N370 MET 85 MODIFIED RESIDUE SEQADV 2O38 GLY B 117 UNP Q6N370 CLONING ARTIFACT SEQADV 2O38 SER B 118 UNP Q6N370 CLONING ARTIFACT SEQRES 1 A 120 GLY HIS MSE VAL ARG LYS SER ILE ASP ARG SER THR ALA SEQRES 2 A 120 ALA GLU ILE THR ARG GLY ILE GLY ASN VAL PHE ALA ASP SEQRES 3 A 120 LEU GLY MSE PRO ASP ALA GLU GLU ARG GLN THR LYS LEU SEQRES 4 A 120 ARG LEU ALA TYR ALA LEU ASN ALA VAL ILE ASP ARG ALA SEQRES 5 A 120 ARG LEU SER GLN ALA ALA ALA ALA ALA ARG LEU GLY ILE SEQRES 6 A 120 ASN GLN PRO LYS VAL SER ALA LEU ARG ASN TYR LYS LEU SEQRES 7 A 120 GLU GLY PHE SER VAL GLU ARG LEU MSE THR LEU LEU ASN SEQRES 8 A 120 ALA LEU ASP GLN ASP VAL GLU ILE VAL ILE ARG LYS LYS SEQRES 9 A 120 PRO ARG SER ARG ALA ALA ALA ARG ILE SER VAL VAL ALA SEQRES 10 A 120 ALA GLY SER SEQRES 1 B 120 GLY HIS MSE VAL ARG LYS SER ILE ASP ARG SER THR ALA SEQRES 2 B 120 ALA GLU ILE THR ARG GLY ILE GLY ASN VAL PHE ALA ASP SEQRES 3 B 120 LEU GLY MSE PRO ASP ALA GLU GLU ARG GLN THR LYS LEU SEQRES 4 B 120 ARG LEU ALA TYR ALA LEU ASN ALA VAL ILE ASP ARG ALA SEQRES 5 B 120 ARG LEU SER GLN ALA ALA ALA ALA ALA ARG LEU GLY ILE SEQRES 6 B 120 ASN GLN PRO LYS VAL SER ALA LEU ARG ASN TYR LYS LEU SEQRES 7 B 120 GLU GLY PHE SER VAL GLU ARG LEU MSE THR LEU LEU ASN SEQRES 8 B 120 ALA LEU ASP GLN ASP VAL GLU ILE VAL ILE ARG LYS LYS SEQRES 9 B 120 PRO ARG SER ARG ALA ALA ALA ARG ILE SER VAL VAL ALA SEQRES 10 B 120 ALA GLY SER MODRES 2O38 MSE A 85 MET SELENOMETHIONINE MODRES 2O38 MSE B 27 MET SELENOMETHIONINE MODRES 2O38 MSE B 85 MET SELENOMETHIONINE HET MSE A 85 8 HET MSE B 27 8 HET MSE B 85 8 HET ACY A 201 4 HET ACY B 201 4 HET ACY B 202 4 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 ACY 3(C2 H4 O2) FORMUL 6 HOH *150(H2 O) HELIX 1 1 PRO A 28 ALA A 50 1 23 HELIX 2 2 SER A 53 GLY A 62 1 10 HELIX 3 3 ASN A 64 ASN A 73 1 10 HELIX 4 4 SER A 80 LEU A 91 1 12 HELIX 5 5 PRO B 28 ARG B 51 1 24 HELIX 6 6 SER B 53 GLY B 62 1 10 HELIX 7 7 ASN B 64 ASN B 73 1 10 HELIX 8 8 SER B 80 LEU B 91 1 12 SHEET 1 A 4 ILE A 111 ALA A 116 0 SHEET 2 A 4 GLN B 93 LYS B 101 1 O ILE B 99 N VAL A 114 SHEET 3 A 4 GLN A 93 LYS A 101 -1 N GLU A 96 O VAL B 98 SHEET 4 A 4 ILE B 111 ALA B 115 1 O SER B 112 N ILE A 97 LINK C LEU A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N THR A 86 1555 1555 1.31 LINK C MSE B 27 N PRO B 28 1555 1555 1.34 LINK C LEU B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N BTHR B 86 1555 1555 1.33 LINK C MSE B 85 N ATHR B 86 1555 1555 1.34 SITE 1 AC1 4 ASN A 44 ASP A 48 TYR A 74 ARG B 60 SITE 1 AC2 7 ALA A 56 ALA A 59 ARG A 60 TYR B 41 SITE 2 AC2 7 ASN B 44 ASP B 48 TYR B 74 SITE 1 AC3 7 ILE A 99 ALA B 42 VAL B 46 ARG B 49 SITE 2 AC3 7 GLN B 93 ALA B 115 HOH B 226 CRYST1 33.994 58.276 83.459 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029417 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011982 0.00000