PDB Short entry for 2OB1 HEADER TRANSFERASE 18-DEC-06 2OB1 TITLE PPM1 WITH 1,8-ANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE CARBOXYL METHYLTRANSFERASE 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PROTEIN PHOSPHATASE METHYLTRANSFERASE 1; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PPM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS PPM1 IN THE PRESENCE OF 1, 8-ANS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.GROVES REVDAT 4 30-AUG-23 2OB1 1 REMARK REVDAT 3 24-FEB-09 2OB1 1 VERSN REVDAT 2 22-MAY-07 2OB1 1 JRNL REVDAT 1 30-JAN-07 2OB1 0 JRNL AUTH M.R.GROVES,I.B.MULLER,X.KREPLIN,J.MULLER-DIECKMANN JRNL TITL A METHOD FOR THE GENERAL IDENTIFICATION OF PROTEIN CRYSTALS JRNL TITL 2 IN CRYSTALLIZATION EXPERIMENTS USING A NONCOVALENT JRNL TITL 3 FLUORESCENT DYE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 526 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17372358 JRNL DOI 10.1107/S0907444906056137 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 88060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4404 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6162 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 325 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 913 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.194 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8044 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10920 ; 1.524 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1015 ; 5.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 349 ;33.399 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1522 ;14.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;16.850 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1236 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5964 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4662 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5708 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 995 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5057 ; 1.009 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7995 ; 1.619 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3411 ; 2.534 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2905 ; 3.871 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 10 B 328 6 REMARK 3 1 A 10 A 328 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 B (A): 2520 ; 0.380 ; 5.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 2520 ; 2.140 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 10 C 328 6 REMARK 3 1 A 10 A 328 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 C (A): 2536 ; 0.390 ; 5.000 REMARK 3 LOOSE THERMAL 2 C (A**2): 2536 ; 4.950 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : SI(111) MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 83.045 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1RJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M MES, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.96000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.98000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.97000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.99000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER IS BIOLOGICAL UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2352 O HOH A 2353 1.98 REMARK 500 O HOH A 2357 O HOH A 2362 2.01 REMARK 500 O PRO B 161 O HOH B 2297 2.04 REMARK 500 CG2 VAL C 73 O HOH C 2198 2.05 REMARK 500 O HOH A 2127 O HOH A 2348 2.07 REMARK 500 OG SER A 149 O HOH A 2320 2.08 REMARK 500 OG SER C 149 O HOH C 2185 2.08 REMARK 500 O HOH B 2272 O HOH B 2302 2.09 REMARK 500 OD2 ASP B 241 O HOH B 2154 2.10 REMARK 500 OH TYR B 76 O HOH B 2294 2.10 REMARK 500 O HOH A 2051 O HOH A 2121 2.11 REMARK 500 OG SER B 221 O HOH B 2087 2.12 REMARK 500 O HOH A 2091 O HOH A 2204 2.13 REMARK 500 O HOH B 2170 O HOH B 2314 2.15 REMARK 500 O HOH B 2232 O HOH B 2278 2.17 REMARK 500 O HOH B 2172 O HOH B 2289 2.18 REMARK 500 O HOH A 2067 O HOH A 2354 2.18 REMARK 500 O GLY A 105 O HOH A 2112 2.18 REMARK 500 O HOH A 2125 O HOH A 2208 2.19 REMARK 500 O HOH A 2051 O HOH A 2310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2280 O HOH B 2065 3565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 179 CG1 - CB - CG2 ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 156 53.57 -65.70 REMARK 500 THR A 157 -53.82 -25.19 REMARK 500 TYR A 265 70.91 -105.82 REMARK 500 SER B 69 31.75 -98.60 REMARK 500 ASP B 156 103.16 -38.84 REMARK 500 ASN B 240 40.75 37.57 REMARK 500 TYR B 265 74.65 -105.07 REMARK 500 GLN B 306 106.82 -163.22 REMARK 500 GLU B 310 71.26 -117.86 REMARK 500 SER C 34 171.04 -52.20 REMARK 500 SER C 160 145.15 -38.57 REMARK 500 ASN C 240 -11.61 92.06 REMARK 500 SER C 254 -45.79 59.06 REMARK 500 ASN C 256 64.55 20.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OB2 RELATED DB: PDB REMARK 900 PPM1 IN THE ABSENCE OF 1,8-ANS (CF 1JD) DBREF 2OB1 A 10 328 UNP Q04081 LCMT1_YEAST 10 328 DBREF 2OB1 B 10 328 UNP Q04081 LCMT1_YEAST 10 328 DBREF 2OB1 C 10 328 UNP Q04081 LCMT1_YEAST 10 328 SEQRES 1 A 319 TYR ASP ALA LEU SER CYS LYS LEU ALA ALA ILE SER VAL SEQRES 2 A 319 GLY TYR LEU PRO SER SER GLY LEU GLN ARG LEU SER VAL SEQRES 3 A 319 ASP LEU SER LYS LYS TYR THR GLU TRP HIS ARG SER TYR SEQRES 4 A 319 LEU ILE THR LEU LYS LYS PHE SER ARG ARG ALA PHE GLY SEQRES 5 A 319 LYS VAL ASP LYS ALA MET ARG SER SER PHE PRO VAL MET SEQRES 6 A 319 ASN TYR GLY THR TYR LEU ARG THR VAL GLY ILE ASP ALA SEQRES 7 A 319 ALA ILE LEU GLU PHE LEU VAL ALA ASN GLU LYS VAL GLN SEQRES 8 A 319 VAL VAL ASN LEU GLY CYS GLY SER ASP LEU ARG MET LEU SEQRES 9 A 319 PRO LEU LEU GLN MET PHE PRO HIS LEU ALA TYR VAL ASP SEQRES 10 A 319 ILE ASP TYR ASN GLU SER VAL GLU LEU LYS ASN SER ILE SEQRES 11 A 319 LEU ARG GLU SER GLU ILE LEU ARG ILE SER LEU GLY LEU SEQRES 12 A 319 SER LYS GLU ASP THR ALA LYS SER PRO PHE LEU ILE ASP SEQRES 13 A 319 GLN GLY ARG TYR LYS LEU ALA ALA CYS ASP LEU ASN ASP SEQRES 14 A 319 ILE THR GLU THR THR ARG LEU LEU ASP VAL CYS THR LYS SEQRES 15 A 319 ARG GLU ILE PRO THR ILE VAL ILE SER GLU CYS LEU LEU SEQRES 16 A 319 CYS TYR MET HIS ASN ASN GLU SER GLN LEU LEU ILE ASN SEQRES 17 A 319 THR ILE MET SER LYS PHE SER HIS GLY LEU TRP ILE SER SEQRES 18 A 319 TYR ASP PRO ILE GLY GLY SER GLN PRO ASN ASP ARG PHE SEQRES 19 A 319 GLY ALA ILE MET GLN SER ASN LEU LYS GLU SER ARG ASN SEQRES 20 A 319 LEU GLU MET PRO THR LEU MET THR TYR ASN SER LYS GLU SEQRES 21 A 319 LYS TYR ALA SER ARG TRP SER ALA ALA PRO ASN VAL ILE SEQRES 22 A 319 VAL ASN ASP MET TRP GLU ILE PHE ASN ALA GLN ILE PRO SEQRES 23 A 319 GLU SER GLU ARG LYS ARG LEU ARG SER LEU GLN PHE LEU SEQRES 24 A 319 ASP GLU LEU GLU GLU LEU LYS VAL MET GLN THR HIS TYR SEQRES 25 A 319 ILE LEU MET LYS ALA GLN TRP SEQRES 1 B 319 TYR ASP ALA LEU SER CYS LYS LEU ALA ALA ILE SER VAL SEQRES 2 B 319 GLY TYR LEU PRO SER SER GLY LEU GLN ARG LEU SER VAL SEQRES 3 B 319 ASP LEU SER LYS LYS TYR THR GLU TRP HIS ARG SER TYR SEQRES 4 B 319 LEU ILE THR LEU LYS LYS PHE SER ARG ARG ALA PHE GLY SEQRES 5 B 319 LYS VAL ASP LYS ALA MET ARG SER SER PHE PRO VAL MET SEQRES 6 B 319 ASN TYR GLY THR TYR LEU ARG THR VAL GLY ILE ASP ALA SEQRES 7 B 319 ALA ILE LEU GLU PHE LEU VAL ALA ASN GLU LYS VAL GLN SEQRES 8 B 319 VAL VAL ASN LEU GLY CYS GLY SER ASP LEU ARG MET LEU SEQRES 9 B 319 PRO LEU LEU GLN MET PHE PRO HIS LEU ALA TYR VAL ASP SEQRES 10 B 319 ILE ASP TYR ASN GLU SER VAL GLU LEU LYS ASN SER ILE SEQRES 11 B 319 LEU ARG GLU SER GLU ILE LEU ARG ILE SER LEU GLY LEU SEQRES 12 B 319 SER LYS GLU ASP THR ALA LYS SER PRO PHE LEU ILE ASP SEQRES 13 B 319 GLN GLY ARG TYR LYS LEU ALA ALA CYS ASP LEU ASN ASP SEQRES 14 B 319 ILE THR GLU THR THR ARG LEU LEU ASP VAL CYS THR LYS SEQRES 15 B 319 ARG GLU ILE PRO THR ILE VAL ILE SER GLU CYS LEU LEU SEQRES 16 B 319 CYS TYR MET HIS ASN ASN GLU SER GLN LEU LEU ILE ASN SEQRES 17 B 319 THR ILE MET SER LYS PHE SER HIS GLY LEU TRP ILE SER SEQRES 18 B 319 TYR ASP PRO ILE GLY GLY SER GLN PRO ASN ASP ARG PHE SEQRES 19 B 319 GLY ALA ILE MET GLN SER ASN LEU LYS GLU SER ARG ASN SEQRES 20 B 319 LEU GLU MET PRO THR LEU MET THR TYR ASN SER LYS GLU SEQRES 21 B 319 LYS TYR ALA SER ARG TRP SER ALA ALA PRO ASN VAL ILE SEQRES 22 B 319 VAL ASN ASP MET TRP GLU ILE PHE ASN ALA GLN ILE PRO SEQRES 23 B 319 GLU SER GLU ARG LYS ARG LEU ARG SER LEU GLN PHE LEU SEQRES 24 B 319 ASP GLU LEU GLU GLU LEU LYS VAL MET GLN THR HIS TYR SEQRES 25 B 319 ILE LEU MET LYS ALA GLN TRP SEQRES 1 C 319 TYR ASP ALA LEU SER CYS LYS LEU ALA ALA ILE SER VAL SEQRES 2 C 319 GLY TYR LEU PRO SER SER GLY LEU GLN ARG LEU SER VAL SEQRES 3 C 319 ASP LEU SER LYS LYS TYR THR GLU TRP HIS ARG SER TYR SEQRES 4 C 319 LEU ILE THR LEU LYS LYS PHE SER ARG ARG ALA PHE GLY SEQRES 5 C 319 LYS VAL ASP LYS ALA MET ARG SER SER PHE PRO VAL MET SEQRES 6 C 319 ASN TYR GLY THR TYR LEU ARG THR VAL GLY ILE ASP ALA SEQRES 7 C 319 ALA ILE LEU GLU PHE LEU VAL ALA ASN GLU LYS VAL GLN SEQRES 8 C 319 VAL VAL ASN LEU GLY CYS GLY SER ASP LEU ARG MET LEU SEQRES 9 C 319 PRO LEU LEU GLN MET PHE PRO HIS LEU ALA TYR VAL ASP SEQRES 10 C 319 ILE ASP TYR ASN GLU SER VAL GLU LEU LYS ASN SER ILE SEQRES 11 C 319 LEU ARG GLU SER GLU ILE LEU ARG ILE SER LEU GLY LEU SEQRES 12 C 319 SER LYS GLU ASP THR ALA LYS SER PRO PHE LEU ILE ASP SEQRES 13 C 319 GLN GLY ARG TYR LYS LEU ALA ALA CYS ASP LEU ASN ASP SEQRES 14 C 319 ILE THR GLU THR THR ARG LEU LEU ASP VAL CYS THR LYS SEQRES 15 C 319 ARG GLU ILE PRO THR ILE VAL ILE SER GLU CYS LEU LEU SEQRES 16 C 319 CYS TYR MET HIS ASN ASN GLU SER GLN LEU LEU ILE ASN SEQRES 17 C 319 THR ILE MET SER LYS PHE SER HIS GLY LEU TRP ILE SER SEQRES 18 C 319 TYR ASP PRO ILE GLY GLY SER GLN PRO ASN ASP ARG PHE SEQRES 19 C 319 GLY ALA ILE MET GLN SER ASN LEU LYS GLU SER ARG ASN SEQRES 20 C 319 LEU GLU MET PRO THR LEU MET THR TYR ASN SER LYS GLU SEQRES 21 C 319 LYS TYR ALA SER ARG TRP SER ALA ALA PRO ASN VAL ILE SEQRES 22 C 319 VAL ASN ASP MET TRP GLU ILE PHE ASN ALA GLN ILE PRO SEQRES 23 C 319 GLU SER GLU ARG LYS ARG LEU ARG SER LEU GLN PHE LEU SEQRES 24 C 319 ASP GLU LEU GLU GLU LEU LYS VAL MET GLN THR HIS TYR SEQRES 25 C 319 ILE LEU MET LYS ALA GLN TRP HET PO4 A2001 5 HET PO4 B2003 5 HET PO4 C2004 5 HETNAM PO4 PHOSPHATE ION FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *913(H2 O) HELIX 1 1 TYR A 10 GLY A 23 1 14 HELIX 2 2 SER A 34 SER A 56 1 23 HELIX 3 3 SER A 56 SER A 69 1 14 HELIX 4 4 PHE A 71 ASN A 96 1 26 HELIX 5 5 ARG A 111 PHE A 119 1 9 HELIX 6 6 TYR A 129 SER A 143 1 15 HELIX 7 7 SER A 143 GLY A 151 1 9 HELIX 8 8 ASP A 178 THR A 190 1 13 HELIX 9 9 LEU A 203 MET A 207 5 5 HELIX 10 10 HIS A 208 PHE A 223 1 16 HELIX 11 11 ARG A 242 ARG A 255 1 14 HELIX 12 12 SER A 267 SER A 273 1 7 HELIX 13 13 ARG A 274 SER A 276 5 3 HELIX 14 14 MET A 286 GLN A 293 1 8 HELIX 15 15 PRO A 295 GLN A 306 1 12 HELIX 16 16 GLU A 310 THR A 319 1 10 HELIX 17 17 TYR B 10 VAL B 22 1 13 HELIX 18 18 SER B 34 SER B 56 1 23 HELIX 19 19 SER B 56 SER B 69 1 14 HELIX 20 20 PHE B 71 ASN B 96 1 26 HELIX 21 21 ARG B 111 PHE B 119 1 9 HELIX 22 22 TYR B 129 SER B 143 1 15 HELIX 23 23 SER B 143 LEU B 150 1 8 HELIX 24 24 ASP B 178 THR B 190 1 13 HELIX 25 25 LEU B 203 MET B 207 5 5 HELIX 26 26 HIS B 208 SER B 221 1 14 HELIX 27 27 ARG B 242 ARG B 255 1 14 HELIX 28 28 SER B 267 SER B 273 1 7 HELIX 29 29 ARG B 274 SER B 276 5 3 HELIX 30 30 MET B 286 ILE B 294 1 9 HELIX 31 31 PRO B 295 GLN B 306 1 12 HELIX 32 32 GLU B 310 THR B 319 1 10 HELIX 33 33 TYR C 10 GLY C 23 1 14 HELIX 34 34 SER C 34 SER C 56 1 23 HELIX 35 35 SER C 56 SER C 69 1 14 HELIX 36 36 PHE C 71 ASN C 96 1 26 HELIX 37 37 ARG C 111 PHE C 119 1 9 HELIX 38 38 TYR C 129 SER C 143 1 15 HELIX 39 39 SER C 143 GLY C 151 1 9 HELIX 40 40 ASP C 178 VAL C 188 1 11 HELIX 41 41 LEU C 203 MET C 207 5 5 HELIX 42 42 HIS C 208 SER C 221 1 14 HELIX 43 43 ARG C 242 GLU C 253 1 12 HELIX 44 44 SER C 267 ARG C 274 1 8 HELIX 45 45 MET C 286 GLN C 293 1 8 HELIX 46 46 PRO C 295 GLN C 306 1 12 HELIX 47 47 GLU C 310 THR C 319 1 10 SHEET 1 A 8 PHE A 162 GLN A 166 0 SHEET 2 A 8 TYR A 169 ALA A 173 -1 O LEU A 171 N LEU A 163 SHEET 3 A 8 LEU A 122 ASP A 128 1 N ASP A 126 O LYS A 170 SHEET 4 A 8 VAL A 99 LEU A 104 1 N ASN A 103 O VAL A 125 SHEET 5 A 8 THR A 196 GLU A 201 1 O ILE A 197 N VAL A 102 SHEET 6 A 8 GLY A 226 PRO A 233 1 O ILE A 229 N VAL A 198 SHEET 7 A 8 TYR A 321 TRP A 328 -1 O ALA A 326 N TRP A 228 SHEET 8 A 8 ASN A 280 ASP A 285 -1 N ASN A 280 O GLN A 327 SHEET 1 B 8 PHE B 162 GLN B 166 0 SHEET 2 B 8 TYR B 169 ALA B 173 -1 O LEU B 171 N LEU B 163 SHEET 3 B 8 LEU B 122 ASP B 128 1 N ASP B 126 O LYS B 170 SHEET 4 B 8 VAL B 99 LEU B 104 1 N ASN B 103 O VAL B 125 SHEET 5 B 8 THR B 196 GLU B 201 1 O ILE B 199 N VAL B 102 SHEET 6 B 8 GLY B 226 PRO B 233 1 O ILE B 229 N VAL B 198 SHEET 7 B 8 TYR B 321 TRP B 328 -1 O ALA B 326 N TRP B 228 SHEET 8 B 8 ASN B 280 ASP B 285 -1 N ASN B 280 O GLN B 327 SHEET 1 C 8 PHE C 162 GLN C 166 0 SHEET 2 C 8 TYR C 169 ALA C 173 -1 O LEU C 171 N LEU C 163 SHEET 3 C 8 LEU C 122 ASP C 128 1 N ASP C 126 O LYS C 170 SHEET 4 C 8 VAL C 99 LEU C 104 1 N ASN C 103 O VAL C 125 SHEET 5 C 8 THR C 196 GLU C 201 1 O ILE C 197 N VAL C 102 SHEET 6 C 8 GLY C 226 PRO C 233 1 O ILE C 229 N VAL C 198 SHEET 7 C 8 TYR C 321 TRP C 328 -1 O ALA C 326 N TRP C 228 SHEET 8 C 8 ASN C 280 ASP C 285 -1 N ASN C 280 O GLN C 327 CISPEP 1 LEU A 25 PRO A 26 0 0.61 CISPEP 2 SER A 160 PRO A 161 0 12.16 CISPEP 3 LEU B 25 PRO B 26 0 -2.84 CISPEP 4 SER B 160 PRO B 161 0 8.34 CISPEP 5 LEU C 25 PRO C 26 0 -0.33 CISPEP 6 SER C 160 PRO C 161 0 2.59 SITE 1 AC1 9 LYS B 16 TYR B 41 HIS B 45 THR B 82 SITE 2 AC1 9 ASP B 109 LEU B 110 ARG B 111 HOH B2064 SITE 3 AC1 9 HOH B2107 SITE 1 AC2 8 LYS C 16 TYR C 41 HIS C 45 ASP C 109 SITE 2 AC2 8 LEU C 110 ARG C 111 HOH C2047 HOH C2051 SITE 1 AC3 9 LYS A 16 TYR A 41 HIS A 45 ASP A 109 SITE 2 AC3 9 LEU A 110 ARG A 111 HOH A2042 HOH A2071 SITE 3 AC3 9 HOH A2352 CRYST1 110.620 110.620 161.940 90.00 90.00 120.00 P 65 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009040 0.005219 0.000000 0.00000 SCALE2 0.000000 0.010438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006175 0.00000