PDB Short entry for 2ODP HEADER HYDROLASE 25-DEC-06 2ODP TITLE COMPLEMENT COMPONENT C2A, THE CATALYTIC FRAGMENT OF C3- AND C5- TITLE 2 CONVERTASE OF HUMAN COMPLEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COMPLEMENT C2A FRAGMENT; COMPND 5 SYNONYM: C3/C5 CONVERTASE; COMPND 6 EC: 3.4.21.43; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE(BTI-TN-5B1-4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS COMPLEMENT COMPONENT C2A, C3/C5 CONVERTASE, COMPLEMENT SERINE KEYWDS 2 PROTEASE, HUMAN COMPLEMENT SYSTEM, GLYCOPROTEIN, SP, VWFA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.V.L.NARAYANA,V.KRISHNAN REVDAT 7 25-OCT-23 2ODP 1 REMARK REVDAT 6 10-NOV-21 2ODP 1 SEQADV HETSYN REVDAT 5 29-JUL-20 2ODP 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 2ODP 1 VERSN REVDAT 3 24-FEB-09 2ODP 1 VERSN REVDAT 2 13-MAR-07 2ODP 1 JRNL REVDAT 1 06-FEB-07 2ODP 0 JRNL AUTH V.KRISHNAN,Y.XU,K.MACON,J.E.VOLANAKIS,S.V.NARAYANA JRNL TITL THE CRYSTAL STRUCTURE OF C2A, THE CATALYTIC FRAGMENT OF JRNL TITL 2 CLASSICAL PATHWAY C3 AND C5 CONVERTASE OF HUMAN COMPLEMENT. JRNL REF J.MOL.BIOL. V. 367 224 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17234210 JRNL DOI 10.1016/J.JMB.2006.12.039 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 48766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.98000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.166 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4074 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5520 ; 1.637 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 6.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;33.640 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;15.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.190 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3014 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1816 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2767 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.270 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2519 ; 1.491 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3926 ; 1.813 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1753 ; 3.104 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1594 ; 4.618 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ODP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 225 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49897 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2ODQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.1M HEPES, 0.3M GLYCYL REMARK 280 -GLYCYL-GLYCINE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.90950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 GLN A 469 REMARK 465 GLU A 470 REMARK 465 ARG A 490 REMARK 465 ASP A 491 REMARK 465 GLY A 492 REMARK 465 ASN A 493 REMARK 465 ASP A 494 REMARK 465 HIS A 495 REMARK 465 SER A 496 REMARK 465 LEU A 497 REMARK 465 GLY A 687 REMARK 465 SER A 688 REMARK 465 ALA A 689 REMARK 465 ASP A 690 REMARK 465 LYS A 691 REMARK 465 PRO A 731 REMARK 465 LEU A 732 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 336 CG CD1 CD2 REMARK 470 LYS A 395 CB CG CD CE NZ REMARK 470 LYS A 701 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 904 O HOH A 978 1.88 REMARK 500 O HOH A 915 O HOH A 1060 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 402 CD GLU A 402 OE2 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 574 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 574 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 667 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 667 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 706 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 706 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 720 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 720 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 279 -108.40 -142.87 REMARK 500 ASN A 318 79.15 -100.66 REMARK 500 MET A 339 -38.32 -35.84 REMARK 500 LYS A 358 55.92 -108.16 REMARK 500 ASN A 360 12.70 -151.08 REMARK 500 ASN A 379 -167.35 -111.12 REMARK 500 GLN A 480 -5.87 -141.82 REMARK 500 GLN A 508 -15.90 -49.31 REMARK 500 ASN A 631 62.98 -118.17 REMARK 500 GLN A 649 -122.89 43.68 REMARK 500 PHE A 669 18.72 56.81 REMARK 500 LYS A 701 37.48 -72.04 REMARK 500 VAL A 702 119.51 -16.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 242 OG REMARK 620 2 SER A 244 OG 97.1 REMARK 620 3 THR A 317 OG1 89.2 169.6 REMARK 620 4 HOH A 902 O 96.4 85.6 102.0 REMARK 620 5 HOH A 903 O 173.8 86.1 86.9 89.1 REMARK 620 6 HOH A 904 O 90.1 85.7 86.0 169.7 84.8 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE INHIBITOR REMARK 630 MOLECULE NAME: 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 NAG A 807 REMARK 630 NAG A 808 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ODQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT MG ION DBREF 2ODP A 224 732 UNP P06681 CO2_HUMAN 244 752 SEQADV 2ODP ALA A 241 UNP P06681 CYS 261 ENGINEERED MUTATION SEQRES 1 A 509 LYS ILE GLN ILE GLN ARG SER GLY HIS LEU ASN LEU TYR SEQRES 2 A 509 LEU LEU LEU ASP ALA SER GLN SER VAL SER GLU ASN ASP SEQRES 3 A 509 PHE LEU ILE PHE LYS GLU SER ALA SER LEU MET VAL ASP SEQRES 4 A 509 ARG ILE PHE SER PHE GLU ILE ASN VAL SER VAL ALA ILE SEQRES 5 A 509 ILE THR PHE ALA SER GLU PRO LYS VAL LEU MET SER VAL SEQRES 6 A 509 LEU ASN ASP ASN SER ARG ASP MET THR GLU VAL ILE SER SEQRES 7 A 509 SER LEU GLU ASN ALA ASN TYR LYS ASP HIS GLU ASN GLY SEQRES 8 A 509 THR GLY THR ASN THR TYR ALA ALA LEU ASN SER VAL TYR SEQRES 9 A 509 LEU MET MET ASN ASN GLN MET ARG LEU LEU GLY MET GLU SEQRES 10 A 509 THR MET ALA TRP GLN GLU ILE ARG HIS ALA ILE ILE LEU SEQRES 11 A 509 LEU THR ASP GLY LYS SER ASN MET GLY GLY SER PRO LYS SEQRES 12 A 509 THR ALA VAL ASP HIS ILE ARG GLU ILE LEU ASN ILE ASN SEQRES 13 A 509 GLN LYS ARG ASN ASP TYR LEU ASP ILE TYR ALA ILE GLY SEQRES 14 A 509 VAL GLY LYS LEU ASP VAL ASP TRP ARG GLU LEU ASN GLU SEQRES 15 A 509 LEU GLY SER LYS LYS ASP GLY GLU ARG HIS ALA PHE ILE SEQRES 16 A 509 LEU GLN ASP THR LYS ALA LEU HIS GLN VAL PHE GLU HIS SEQRES 17 A 509 MET LEU ASP VAL SER LYS LEU THR ASP THR ILE CYS GLY SEQRES 18 A 509 VAL GLY ASN MET SER ALA ASN ALA SER ASP GLN GLU ARG SEQRES 19 A 509 THR PRO TRP HIS VAL THR ILE LYS PRO LYS SER GLN GLU SEQRES 20 A 509 THR CYS ARG GLY ALA LEU ILE SER ASP GLN TRP VAL LEU SEQRES 21 A 509 THR ALA ALA HIS CYS PHE ARG ASP GLY ASN ASP HIS SER SEQRES 22 A 509 LEU TRP ARG VAL ASN VAL GLY ASP PRO LYS SER GLN TRP SEQRES 23 A 509 GLY LYS GLU PHE LEU ILE GLU LYS ALA VAL ILE SER PRO SEQRES 24 A 509 GLY PHE ASP VAL PHE ALA LYS LYS ASN GLN GLY ILE LEU SEQRES 25 A 509 GLU PHE TYR GLY ASP ASP ILE ALA LEU LEU LYS LEU ALA SEQRES 26 A 509 GLN LYS VAL LYS MET SER THR HIS ALA ARG PRO ILE CYS SEQRES 27 A 509 LEU PRO CYS THR MET GLU ALA ASN LEU ALA LEU ARG ARG SEQRES 28 A 509 PRO GLN GLY SER THR CYS ARG ASP HIS GLU ASN GLU LEU SEQRES 29 A 509 LEU ASN LYS GLN SER VAL PRO ALA HIS PHE VAL ALA LEU SEQRES 30 A 509 ASN GLY SER LYS LEU ASN ILE ASN LEU LYS MET GLY VAL SEQRES 31 A 509 GLU TRP THR SER CYS ALA GLU VAL VAL SER GLN GLU LYS SEQRES 32 A 509 THR MET PHE PRO ASN LEU THR ASP VAL ARG GLU VAL VAL SEQRES 33 A 509 THR ASP GLN PHE LEU CYS SER GLY THR GLN GLU ASP GLU SEQRES 34 A 509 SER PRO CYS LYS GLY GLU SER GLY GLY ALA VAL PHE LEU SEQRES 35 A 509 GLU ARG ARG PHE ARG PHE PHE GLN VAL GLY LEU VAL SER SEQRES 36 A 509 TRP GLY LEU TYR ASN PRO CYS LEU GLY SER ALA ASP LYS SEQRES 37 A 509 ASN SER ARG LYS ARG ALA PRO ARG SER LYS VAL PRO PRO SEQRES 38 A 509 PRO ARG ASP PHE HIS ILE ASN LEU PHE ARG MET GLN PRO SEQRES 39 A 509 TRP LEU ARG GLN HIS LEU GLY ASP VAL LEU ASN PHE LEU SEQRES 40 A 509 PRO LEU MODRES 2ODP ASN A 631 ASN GLYCOSYLATION SITE MODRES 2ODP ASN A 447 ASN GLYCOSYLATION SITE MODRES 2ODP ASN A 601 ASN GLYCOSYLATION SITE MODRES 2ODP ASN A 313 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG B 3 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG C 3 14 HET NAG A 807 14 HET NAG A 808 14 HET MG A 901 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 8(C8 H15 N O6) FORMUL 6 MG MG 2+ FORMUL 7 HOH *259(H2 O) HELIX 1 1 SER A 246 SER A 266 1 21 HELIX 2 2 ASN A 290 ARG A 294 5 5 HELIX 3 3 ASP A 295 ASN A 305 1 11 HELIX 4 4 ASN A 307 GLU A 312 5 6 HELIX 5 5 ASN A 318 GLY A 338 1 21 HELIX 6 6 THR A 341 GLU A 346 1 6 HELIX 7 7 PRO A 365 LEU A 376 1 12 HELIX 8 8 ARG A 382 ASP A 384 5 3 HELIX 9 9 ASP A 399 GLY A 407 1 9 HELIX 10 10 ASP A 421 MET A 432 1 12 HELIX 11 11 SER A 453 THR A 458 1 6 HELIX 12 12 ALA A 485 PHE A 489 5 5 HELIX 13 13 LYS A 529 GLY A 533 5 5 HELIX 14 14 THR A 565 LEU A 572 1 8 HELIX 15 15 THR A 579 LEU A 588 1 10 HELIX 16 16 GLY A 612 VAL A 621 1 10 HELIX 17 17 VAL A 622 GLU A 625 5 4 HELIX 18 18 ASP A 634 VAL A 638 5 5 HELIX 19 19 CYS A 655 SER A 659 5 5 HELIX 20 20 MET A 715 GLY A 724 1 10 SHEET 1 A 2 ILE A 225 GLN A 226 0 SHEET 2 A 2 LEU A 433 ASP A 434 1 O ASP A 434 N ILE A 225 SHEET 1 B 6 PRO A 282 MET A 286 0 SHEET 2 B 6 VAL A 271 PHE A 278 -1 N THR A 277 O LYS A 283 SHEET 3 B 6 HIS A 232 ASP A 240 1 N LEU A 235 O ALA A 274 SHEET 4 B 6 ILE A 347 LEU A 354 1 O ARG A 348 N HIS A 232 SHEET 5 B 6 LEU A 386 VAL A 393 1 O TYR A 389 N ILE A 351 SHEET 6 B 6 ALA A 416 LEU A 419 1 O LEU A 419 N GLY A 392 SHEET 1 C 7 LYS A 511 PHE A 513 0 SHEET 2 C 7 ARG A 499 VAL A 502 -1 N VAL A 502 O LYS A 511 SHEET 3 C 7 HIS A 461 LYS A 465 -1 N LYS A 465 O ARG A 499 SHEET 4 C 7 CYS A 472 LEU A 476 -1 O CYS A 472 N ILE A 464 SHEET 5 C 7 TRP A 481 THR A 484 -1 O LEU A 483 N ALA A 475 SHEET 6 C 7 ALA A 543 LEU A 547 -1 O ALA A 543 N THR A 484 SHEET 7 C 7 ILE A 515 ILE A 520 -1 N VAL A 519 O LEU A 544 SHEET 1 D 2 SER A 592 VAL A 598 0 SHEET 2 D 2 LYS A 604 LYS A 610 -1 O LEU A 605 N PHE A 597 SHEET 1 E 4 PHE A 643 SER A 646 0 SHEET 2 E 4 ASP A 707 ASN A 711 -1 O HIS A 709 N LEU A 644 SHEET 3 E 4 ARG A 670 GLY A 680 -1 N TRP A 679 O PHE A 708 SHEET 4 E 4 ALA A 662 ARG A 667 -1 N VAL A 663 O GLY A 675 SSBOND 1 CYS A 443 CYS A 561 1555 1555 2.13 SSBOND 2 CYS A 472 CYS A 488 1555 1555 2.01 SSBOND 3 CYS A 564 CYS A 580 1555 1555 2.04 SSBOND 4 CYS A 618 CYS A 645 1555 1555 2.07 SSBOND 5 CYS A 655 CYS A 685 1555 1555 2.05 LINK ND2 ASN A 313 C1 NAG A 808 1555 1555 1.44 LINK ND2 ASN A 447 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 601 C1 NAG A 807 1555 1555 1.43 LINK ND2 ASN A 631 C1 NAG B 1 1555 1555 2.21 LINK O3 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.48 LINK OG SER A 242 MG MG A 901 1555 1555 1.97 LINK OG SER A 244 MG MG A 901 1555 1555 2.20 LINK OG1 THR A 317 MG MG A 901 1555 1555 2.10 LINK MG MG A 901 O HOH A 902 1555 1555 1.93 LINK MG MG A 901 O HOH A 903 1555 1555 1.96 LINK MG MG A 901 O HOH A 904 1555 1555 2.23 CISPEP 1 VAL A 702 PRO A 703 0 -9.14 CRYST1 51.398 83.819 75.243 90.00 92.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019456 0.000000 0.000712 0.00000 SCALE2 0.000000 0.011930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013299 0.00000