PDB Short entry for 2OGB HEADER LIGASE 05-JAN-07 2OGB TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF MOUSE NRDP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN 41; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NRDP1 C-TERMINAL DOMAIN; COMPND 5 EC: 6.3.2.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RNF41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41 KEYWDS E3 UBIQUITIN LIGASE, RECEPTOR-BINDING REGION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BOUYAIN,D.J.LEAHY REVDAT 6 27-DEC-23 2OGB 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OGB 1 REMARK REVDAT 4 13-JUL-11 2OGB 1 VERSN REVDAT 3 24-FEB-09 2OGB 1 VERSN REVDAT 2 03-APR-07 2OGB 1 JRNL REVDAT 1 16-JAN-07 2OGB 0 JRNL AUTH S.BOUYAIN,D.J.LEAHY JRNL TITL STRUCTURE-BASED MUTAGENESIS OF THE SUBSTRATE-RECOGNITION JRNL TITL 2 DOMAIN OF NRDP1/FLRF IDENTIFIES THE BINDING SITE FOR THE JRNL TITL 3 RECEPTOR TYROSINE KINASE ERBB3. JRNL REF PROTEIN SCI. V. 16 654 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17384230 JRNL DOI 10.1110/PS.062700307 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 20090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 801 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.80000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2010 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2722 ; 1.373 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 1.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;38.263 ;24.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ; 9.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 299 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1530 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 974 ; 0.281 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1428 ; 0.325 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.382 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1237 ; 1.539 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 2.865 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 773 ; 5.334 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 723 ; 8.797 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 198 A 296 REMARK 3 RESIDUE RANGE : A 306 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): -38.6290 -0.4460 1.4330 REMARK 3 T TENSOR REMARK 3 T11: -0.2509 T22: -0.2796 REMARK 3 T33: -0.1915 T12: 0.0061 REMARK 3 T13: -0.0143 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.8674 L22: 4.2253 REMARK 3 L33: 3.1592 L12: -2.0104 REMARK 3 L13: -1.4329 L23: 2.4997 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: -0.1869 S13: 0.0622 REMARK 3 S21: 0.0886 S22: 0.0978 S23: -0.0424 REMARK 3 S31: -0.0152 S32: 0.0540 S33: -0.0338 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 198 B 296 REMARK 3 RESIDUE RANGE : B 306 B 314 REMARK 3 ORIGIN FOR THE GROUP (A): -14.6770 -21.7330 -13.2270 REMARK 3 T TENSOR REMARK 3 T11: -0.2211 T22: -0.0405 REMARK 3 T33: -0.1870 T12: 0.0497 REMARK 3 T13: -0.0370 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.4371 L22: 2.4146 REMARK 3 L33: 4.9036 L12: -0.3525 REMARK 3 L13: -0.7083 L23: -0.4662 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.0488 S13: -0.0899 REMARK 3 S21: -0.1765 S22: -0.0038 S23: -0.2133 REMARK 3 S31: 0.2958 S32: 0.8959 S33: 0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) POLYETHYLENE GLYCOL 8000, REMARK 280 180 MM POTASSIUM THIOCYANATE, 100 MM TRIS-HCL, PH 8.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.71350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.11350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.71350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.11350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 THR A 193 REMARK 465 ILE A 194 REMARK 465 ILE B 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N THR B 193 OE2 GLU B 303 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 207 C PRO A 208 N -0.178 REMARK 500 THR A 220 C PRO A 221 N -0.152 REMARK 500 CYS A 238 C PRO A 239 N -0.187 REMARK 500 TRP A 255 C PRO A 256 N -0.167 REMARK 500 ILE A 280 C PRO A 281 N -0.175 REMARK 500 GLU A 303 C PRO A 304 N -0.141 REMARK 500 GLN B 207 C PRO B 208 N -0.192 REMARK 500 THR B 220 C PRO B 221 N -0.181 REMARK 500 CYS B 238 C PRO B 239 N -0.185 REMARK 500 TRP B 255 C PRO B 256 N -0.189 REMARK 500 ILE B 280 C PRO B 281 N -0.184 REMARK 500 GLU B 303 C PRO B 304 N -0.190 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 249 35.07 -93.28 REMARK 500 ARG A 253 -19.89 -43.19 REMARK 500 LEU B 259 -6.15 -142.06 REMARK 500 CYS B 291 -9.54 -51.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 320 DBREF 2OGB A 193 317 UNP Q8BH75 RNF41_MOUSE 193 317 DBREF 2OGB B 193 317 UNP Q8BH75 RNF41_MOUSE 193 317 SEQADV 2OGB SER A 0 UNP Q8BH75 CLONING ARTIFACT SEQADV 2OGB MSE A 217 UNP Q8BH75 MET 217 MODIFIED RESIDUE SEQADV 2OGB MSE A 267 UNP Q8BH75 MET 267 MODIFIED RESIDUE SEQADV 2OGB MSE A 289 UNP Q8BH75 MET 289 MODIFIED RESIDUE SEQADV 2OGB MSE A 296 UNP Q8BH75 MET 296 MODIFIED RESIDUE SEQADV 2OGB MSE A 300 UNP Q8BH75 MET 300 MODIFIED RESIDUE SEQADV 2OGB MSE A 308 UNP Q8BH75 MET 308 MODIFIED RESIDUE SEQADV 2OGB SER B 0 UNP Q8BH75 CLONING ARTIFACT SEQADV 2OGB MSE B 217 UNP Q8BH75 MET 217 MODIFIED RESIDUE SEQADV 2OGB MSE B 267 UNP Q8BH75 MET 267 MODIFIED RESIDUE SEQADV 2OGB MSE B 289 UNP Q8BH75 MET 289 MODIFIED RESIDUE SEQADV 2OGB MSE B 296 UNP Q8BH75 MET 296 MODIFIED RESIDUE SEQADV 2OGB MSE B 300 UNP Q8BH75 MET 300 MODIFIED RESIDUE SEQADV 2OGB MSE B 308 UNP Q8BH75 MET 308 MODIFIED RESIDUE SEQRES 1 A 126 SER THR ILE GLU TYR ASN GLU ILE LEU GLU TRP VAL ASN SEQRES 2 A 126 SER LEU GLN PRO ALA ARG VAL THR ARG TRP GLY GLY MSE SEQRES 3 A 126 ILE SER THR PRO ASP ALA VAL LEU GLN ALA VAL ILE LYS SEQRES 4 A 126 ARG SER LEU VAL GLU SER GLY CYS PRO ALA SER ILE VAL SEQRES 5 A 126 ASN GLU LEU ILE GLU ASN ALA HIS GLU ARG SER TRP PRO SEQRES 6 A 126 GLN GLY LEU ALA THR LEU GLU THR ARG GLN MSE ASN ARG SEQRES 7 A 126 ARG TYR TYR GLU ASN TYR VAL ALA LYS ARG ILE PRO GLY SEQRES 8 A 126 LYS GLN ALA VAL VAL VAL MSE ALA CYS GLU ASN GLN HIS SEQRES 9 A 126 MSE GLY ASP ASP MSE VAL GLN GLU PRO GLY LEU VAL MSE SEQRES 10 A 126 ILE PHE ALA HIS GLY VAL GLU GLU ILE SEQRES 1 B 126 SER THR ILE GLU TYR ASN GLU ILE LEU GLU TRP VAL ASN SEQRES 2 B 126 SER LEU GLN PRO ALA ARG VAL THR ARG TRP GLY GLY MSE SEQRES 3 B 126 ILE SER THR PRO ASP ALA VAL LEU GLN ALA VAL ILE LYS SEQRES 4 B 126 ARG SER LEU VAL GLU SER GLY CYS PRO ALA SER ILE VAL SEQRES 5 B 126 ASN GLU LEU ILE GLU ASN ALA HIS GLU ARG SER TRP PRO SEQRES 6 B 126 GLN GLY LEU ALA THR LEU GLU THR ARG GLN MSE ASN ARG SEQRES 7 B 126 ARG TYR TYR GLU ASN TYR VAL ALA LYS ARG ILE PRO GLY SEQRES 8 B 126 LYS GLN ALA VAL VAL VAL MSE ALA CYS GLU ASN GLN HIS SEQRES 9 B 126 MSE GLY ASP ASP MSE VAL GLN GLU PRO GLY LEU VAL MSE SEQRES 10 B 126 ILE PHE ALA HIS GLY VAL GLU GLU ILE MODRES 2OGB MSE A 217 MET SELENOMETHIONINE MODRES 2OGB MSE A 267 MET SELENOMETHIONINE MODRES 2OGB MSE A 289 MET SELENOMETHIONINE MODRES 2OGB MSE A 296 MET SELENOMETHIONINE MODRES 2OGB MSE A 300 MET SELENOMETHIONINE MODRES 2OGB MSE A 308 MET SELENOMETHIONINE MODRES 2OGB MSE B 217 MET SELENOMETHIONINE MODRES 2OGB MSE B 267 MET SELENOMETHIONINE MODRES 2OGB MSE B 289 MET SELENOMETHIONINE MODRES 2OGB MSE B 296 MET SELENOMETHIONINE MODRES 2OGB MSE B 300 MET SELENOMETHIONINE MODRES 2OGB MSE B 308 MET SELENOMETHIONINE HET MSE A 217 8 HET MSE A 267 8 HET MSE A 289 8 HET MSE A 296 8 HET MSE A 300 8 HET MSE A 308 8 HET MSE B 217 8 HET MSE B 267 8 HET MSE B 289 8 HET MSE B 296 8 HET MSE B 300 8 HET MSE B 308 8 HET SCN A 318 3 HET GOL A 319 6 HET GOL A 320 6 HETNAM MSE SELENOMETHIONINE HETNAM SCN THIOCYANATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 SCN C N S 1- FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *122(H2 O) HELIX 1 1 GLU A 195 LEU A 206 1 12 HELIX 2 2 ARG A 213 MSE A 217 5 5 HELIX 3 3 ASP A 222 SER A 236 1 15 HELIX 4 4 PRO A 239 ASN A 249 1 11 HELIX 5 5 ALA A 250 TRP A 255 5 6 HELIX 6 6 THR A 261 ASN A 268 1 8 HELIX 7 7 ASN A 268 GLU A 273 1 6 HELIX 8 8 CYS A 291 ASN A 293 5 3 HELIX 9 9 SER B 0 LEU B 206 1 15 HELIX 10 10 ARG B 213 MSE B 217 5 5 HELIX 11 11 ASP B 222 SER B 236 1 15 HELIX 12 12 ILE B 242 ASN B 249 1 8 HELIX 13 13 ALA B 250 TRP B 255 5 6 HELIX 14 14 THR B 261 ASN B 268 1 8 HELIX 15 15 ARG B 270 TYR B 275 5 6 HELIX 16 16 CYS B 291 ASN B 293 5 3 HELIX 17 17 GLY B 297 VAL B 301 5 5 SHEET 1 A 2 ALA A 209 VAL A 211 0 SHEET 2 A 2 VAL A 314 GLU A 316 -1 O GLU A 315 N ARG A 210 SHEET 1 B 3 LYS A 278 ARG A 279 0 SHEET 2 B 3 ALA A 285 MSE A 289 -1 O VAL A 287 N LYS A 278 SHEET 3 B 3 GLY A 305 ILE A 309 -1 O LEU A 306 N VAL A 288 SHEET 1 C 2 ARG B 210 VAL B 211 0 SHEET 2 C 2 VAL B 314 GLU B 315 -1 O GLU B 315 N ARG B 210 SHEET 1 D 3 LYS B 278 ARG B 279 0 SHEET 2 D 3 ALA B 285 MSE B 289 -1 O VAL B 287 N LYS B 278 SHEET 3 D 3 GLY B 305 ILE B 309 -1 O LEU B 306 N VAL B 288 LINK C GLY A 216 N MSE A 217 1555 1555 1.33 LINK C MSE A 217 N ILE A 218 1555 1555 1.33 LINK C GLN A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N ASN A 268 1555 1555 1.33 LINK C VAL A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N ALA A 290 1555 1555 1.32 LINK C HIS A 295 N MSE A 296 1555 1555 1.34 LINK C MSE A 296 N GLY A 297 1555 1555 1.33 LINK C ASP A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N VAL A 301 1555 1555 1.33 LINK C VAL A 307 N MSE A 308 1555 1555 1.32 LINK C MSE A 308 N ILE A 309 1555 1555 1.33 LINK C GLY B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N ILE B 218 1555 1555 1.33 LINK C GLN B 266 N MSE B 267 1555 1555 1.33 LINK C MSE B 267 N ASN B 268 1555 1555 1.33 LINK C VAL B 288 N MSE B 289 1555 1555 1.33 LINK C MSE B 289 N ALA B 290 1555 1555 1.33 LINK C HIS B 295 N MSE B 296 1555 1555 1.33 LINK C MSE B 296 N GLY B 297 1555 1555 1.33 LINK C ASP B 299 N MSE B 300 1555 1555 1.33 LINK C MSE B 300 N VAL B 301 1555 1555 1.33 LINK C VAL B 307 N MSE B 308 1555 1555 1.33 LINK C MSE B 308 N ILE B 309 1555 1555 1.33 CISPEP 1 GLU A 303 PRO A 304 0 2.11 CISPEP 2 GLU B 303 PRO B 304 0 6.38 SITE 1 AC1 4 HOH A 114 HOH A 122 PRO A 304 HIS A 312 SITE 1 AC2 5 HOH A 102 ARG A 231 HIS A 295 ASP B 222 SITE 2 AC2 5 VAL B 224 SITE 1 AC3 6 GLN A 284 GLU A 303 HIS A 312 GLY A 313 SITE 2 AC3 6 VAL A 314 GLU A 315 CRYST1 157.427 58.227 37.387 90.00 101.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006352 0.000000 0.001296 0.00000 SCALE2 0.000000 0.017174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027298 0.00000