PDB Short entry for 2OMG HEADER HORMONE 22-JAN-07 2OMG TITLE STRUCTURE OF HUMAN INSULIN COCRYSTALLIZED WITH PROTAMINE AND UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN A CHAIN; COMPND 3 CHAIN: A, C, E; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: INSULIN B CHAIN; COMPND 6 CHAIN: B, D, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS INSULIN NPH LIKE CRYSTAL, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR M.NORRMAN,G.SCHLUCKEBIER REVDAT 7 03-APR-24 2OMG 1 REMARK REVDAT 6 27-DEC-23 2OMG 1 REMARK LINK REVDAT 5 07-MAR-18 2OMG 1 REMARK REVDAT 4 13-JUL-11 2OMG 1 VERSN REVDAT 3 24-FEB-09 2OMG 1 VERSN REVDAT 2 10-APR-07 2OMG 1 JRNL REVDAT 1 27-MAR-07 2OMG 0 JRNL AUTH M.NORRMAN,F.HUBALEK,G.SCHLUCKEBIER JRNL TITL STRUCTURAL CHARACTERIZATION OF INSULIN NPH FORMULATIONS. JRNL REF EUR.J.PHARM.SCI. V. 30 414 2007 JRNL REFN JRNL PMID 17339105 JRNL DOI 10.1016/J.EJPS.2007.01.003 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 23837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1521 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.502 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1253 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 817 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1686 ; 1.545 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1929 ; 0.945 ; 3.019 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 6.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;32.987 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;11.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 8.404 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1407 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 354 ; 0.289 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 851 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 616 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 609 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 71 ; 0.294 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.184 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.334 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.305 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 753 ; 0.935 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 298 ; 0.287 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1180 ; 1.667 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 515 ; 2.610 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 505 ; 4.054 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 21 REMARK 3 RESIDUE RANGE : B 1 B 28 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7060 18.9141 10.3410 REMARK 3 T TENSOR REMARK 3 T11: -0.1202 T22: -0.0985 REMARK 3 T33: -0.1343 T12: -0.0271 REMARK 3 T13: 0.0203 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 7.5980 L22: 2.8342 REMARK 3 L33: 3.4967 L12: 1.6010 REMARK 3 L13: -0.6661 L23: -0.6928 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: -0.4200 S13: -0.2810 REMARK 3 S21: 0.2683 S22: 0.1094 S23: -0.0118 REMARK 3 S31: 0.0545 S32: -0.2190 S33: 0.0684 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 21 REMARK 3 RESIDUE RANGE : D 1 D 28 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1331 15.7081 -6.6276 REMARK 3 T TENSOR REMARK 3 T11: -0.0511 T22: -0.0708 REMARK 3 T33: -0.0899 T12: 0.0414 REMARK 3 T13: 0.0172 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 3.1839 L22: 2.7503 REMARK 3 L33: 7.8841 L12: -0.5677 REMARK 3 L13: 0.4361 L23: -1.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.1304 S12: 0.3821 S13: -0.2195 REMARK 3 S21: -0.5161 S22: -0.0564 S23: -0.2551 REMARK 3 S31: 0.6688 S32: 0.4167 S33: -0.0740 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 21 REMARK 3 RESIDUE RANGE : F 1 F 28 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0188 34.0823 7.9448 REMARK 3 T TENSOR REMARK 3 T11: -0.0682 T22: -0.0856 REMARK 3 T33: -0.0061 T12: -0.0336 REMARK 3 T13: -0.0864 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.3460 L22: 8.3895 REMARK 3 L33: 3.6303 L12: -4.0410 REMARK 3 L13: -0.4511 L23: 0.7323 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.2170 S13: 0.6459 REMARK 3 S21: 0.3421 S22: 0.0052 S23: -0.8335 REMARK 3 S31: -0.4795 S32: 0.3363 S33: 0.0465 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: INSULIN TRIMER R-CONFORMATION REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60MM M-CRESOL, 3M UREA, 1.0 MG/ML REMARK 280 PROTAMINE SULPHATE, 400MM NACL, 40MM PHOSPHATE BUFFER, PH 7.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.77000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.83000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.15500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.83000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.38500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.83000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.83000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.15500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.83000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.83000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.38500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 29 REMARK 465 THR B 30 REMARK 465 LYS D 29 REMARK 465 THR D 30 REMARK 465 LYS F 29 REMARK 465 THR F 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PHE F 1 O ARF F 702 2.10 REMARK 500 CL CL B 301 O HOH D 718 2.13 REMARK 500 OD1 ASN B 3 N2 URE B 604 2.15 REMARK 500 N PHE D 1 N ARF D 701 2.16 REMARK 500 N PHE D 1 O ARF D 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO F 28 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR F 27 56.78 -146.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR F 27 PRO F 28 -146.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 18 O REMARK 620 2 CYS A 20 O 100.6 REMARK 620 3 HOH A 712 O 80.4 82.0 REMARK 620 4 HOH A 724 O 161.0 90.9 86.5 REMARK 620 5 HOH A 725 O 102.3 95.2 176.5 91.5 REMARK 620 6 HOH A 726 O 74.1 172.3 91.4 92.8 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 10 NE2 REMARK 620 2 CL B 301 CL 107.8 REMARK 620 3 HIS D 10 NE2 109.4 110.3 REMARK 620 4 HIS F 10 NE2 107.7 112.3 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CRS C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CRS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CRS E 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE E 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE URE D 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF F 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARF E 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7INS RELATED DB: PDB REMARK 900 RELATED ID: 2OLY RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN INSULIN IN PRESENCE OF UREA AT PH 7.0 REMARK 900 RELATED ID: 2OLZ RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN INSULIN IN PRESENCE OF THIOCYANATE AT PH 7.0 REMARK 900 RELATED ID: 2OM0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN INSULIN IN PRESENCE OF UREA AT PH 6.5 REMARK 900 RELATED ID: 2OM1 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN INSULIN IN PRESENCE OF THIOCYANATE AT PH 6.5 REMARK 900 RELATED ID: 2OMH RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN INSULIN COCRYSTALLIZED WITH ARG-12 PEPTIDE IN REMARK 900 PRESENCE OF UREA REMARK 900 RELATED ID: 2OMI RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN INSULIN COCRYSTALLIZED WITH PROTAMINE DBREF 2OMG A 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 2OMG C 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 2OMG E 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 2OMG B 1 30 UNP P01308 INS_HUMAN 25 54 DBREF 2OMG D 1 30 UNP P01308 INS_HUMAN 25 54 DBREF 2OMG F 1 30 UNP P01308 INS_HUMAN 25 54 SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 B 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 B 30 THR PRO LYS THR SEQRES 1 C 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 C 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 D 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 D 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 D 30 THR PRO LYS THR SEQRES 1 E 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 E 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 F 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 F 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 F 30 THR PRO LYS THR HET NA A 401 1 HET CRS A 502 8 HET URE A 602 4 HET URE A 605 4 HET ARF A 704 3 HET ZN B 201 1 HET CL B 301 1 HET URE B 604 4 HET ARF B 703 3 HET CRS C 501 8 HET URE C 603 4 HET URE D 606 4 HET ARF D 701 3 HET CRS E 503 8 HET URE E 601 4 HET ARF E 705 3 HET ARF F 702 3 HETNAM NA SODIUM ION HETNAM CRS M-CRESOL HETNAM URE UREA HETNAM ARF FORMAMIDE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 7 NA NA 1+ FORMUL 8 CRS 3(C7 H8 O) FORMUL 9 URE 6(C H4 N2 O) FORMUL 11 ARF 5(C H3 N O) FORMUL 12 ZN ZN 2+ FORMUL 13 CL CL 1- FORMUL 24 HOH *99(H2 O) HELIX 1 1 GLY A 1 CYS A 7 1 7 HELIX 2 2 SER A 12 ASN A 18 1 7 HELIX 3 3 PHE B 1 GLY B 20 1 20 HELIX 4 4 GLU B 21 GLY B 23 5 3 HELIX 5 5 GLY C 1 CYS C 7 1 7 HELIX 6 6 SER C 12 ASN C 18 1 7 HELIX 7 7 PHE D 1 GLY D 20 1 20 HELIX 8 8 GLU D 21 GLY D 23 5 3 HELIX 9 9 GLY E 1 CYS E 7 1 7 HELIX 10 10 SER E 12 GLU E 17 1 6 HELIX 11 11 ASN E 18 CYS E 20 5 3 HELIX 12 12 PHE F 1 GLY F 20 1 20 HELIX 13 13 GLU F 21 GLY F 23 5 3 SSBOND 1 CYS A 6 CYS A 11 1555 1555 2.02 SSBOND 2 CYS A 7 CYS B 7 1555 1555 2.06 SSBOND 3 CYS A 20 CYS B 19 1555 1555 2.04 SSBOND 4 CYS C 6 CYS C 11 1555 1555 2.02 SSBOND 5 CYS C 7 CYS D 7 1555 1555 2.05 SSBOND 6 CYS C 20 CYS D 19 1555 1555 2.03 SSBOND 7 CYS E 6 CYS E 11 1555 1555 1.98 SSBOND 8 CYS E 7 CYS F 7 1555 1555 2.02 SSBOND 9 CYS E 20 CYS F 19 1555 1555 2.02 LINK N GLY A 1 C ARF A 704 1555 1555 1.74 LINK N PHE B 1 C ARF B 703 1555 1555 1.60 LINK N PHE D 1 C ARF D 701 1555 1555 1.32 LINK N GLY E 1 C ARF E 705 1555 1555 2.22 LINK N PHE F 1 C ARF F 702 1555 1555 1.14 LINK N PHE F 1 N ARF F 702 1555 1555 1.88 LINK O ASN A 18 NA NA A 401 1555 1555 2.38 LINK O CYS A 20 NA NA A 401 1555 1555 2.34 LINK NA NA A 401 O HOH A 712 1555 1555 2.52 LINK NA NA A 401 O HOH A 724 1555 1555 2.19 LINK NA NA A 401 O HOH A 725 1555 1555 2.11 LINK NA NA A 401 O HOH A 726 1555 1555 2.60 LINK NE2 HIS B 10 ZN ZN B 201 1555 1555 2.01 LINK ZN ZN B 201 CL CL B 301 1555 1555 2.07 LINK ZN ZN B 201 NE2 HIS D 10 1555 1555 2.02 LINK ZN ZN B 201 NE2 HIS F 10 1555 1555 1.98 SITE 1 AC1 4 HIS B 10 CL B 301 HIS D 10 HIS F 10 SITE 1 AC2 5 HIS B 10 ZN B 201 HIS D 10 HOH D 718 SITE 2 AC2 5 HIS F 10 SITE 1 AC3 6 ASN A 18 CYS A 20 HOH A 712 HOH A 724 SITE 2 AC3 6 HOH A 725 HOH A 726 SITE 1 AC4 6 CYS C 6 ILE C 10 CYS C 11 LEU D 11 SITE 2 AC4 6 HIS F 5 LEU F 17 SITE 1 AC5 5 CYS A 6 ILE A 10 CYS A 11 LEU B 11 SITE 2 AC5 5 HIS D 5 SITE 1 AC6 6 HIS B 5 CYS E 6 ILE E 10 CYS E 11 SITE 2 AC6 6 LEU F 11 ALA F 14 SITE 1 AC7 7 PHE B 1 ARF B 703 GLN E 5 SER E 9 SITE 2 AC7 7 ILE E 10 CYS E 11 GLN E 15 SITE 1 AC8 4 GLN A 5 SER A 9 ILE A 10 CYS A 11 SITE 1 AC9 5 GLN C 5 SER C 9 ILE C 10 CYS C 11 SITE 2 AC9 5 GLN C 15 SITE 1 BC1 5 TYR A 14 ASN B 3 LEU B 6 ASN F 3 SITE 2 BC1 5 CYS F 7 SITE 1 BC2 5 CYS A 7 ASN B 3 VAL D 2 ASN D 3 SITE 2 BC2 5 LEU D 6 SITE 1 BC3 3 CYS C 7 ASN D 3 LEU F 6 SITE 1 BC4 6 ASN A 21 PHE D 1 VAL D 2 ASN D 3 SITE 2 BC4 6 GLN D 4 HOH D 711 SITE 1 BC5 3 SER C 9 ILE C 10 PHE F 1 SITE 1 BC6 4 PHE B 1 SER E 9 ILE E 10 URE E 601 SITE 1 BC7 3 GLY A 1 GLN A 5 HOH C 605 SITE 1 BC8 1 GLY E 1 CRYST1 61.660 61.660 85.540 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016218 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011690 0.00000