PDB Short entry for 2ON3 HEADER LYASE 23-JAN-07 2ON3 TITLE A STRUCTURAL INSIGHT INTO THE INHIBITION OF HUMAN AND LEISHMANIA TITLE 2 DONOVANI ORNITHINE DECARBOXYLASES BY 3-AMINOOXY-1-AMINOPROPANE CAVEAT 2ON3 CHIRALITY ERROR AT CA CENTER OF ASP 35 CHAIN A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ODC; COMPND 5 EC: 4.1.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ODC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BLR(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXP5-NT/TOPO TA KEYWDS BETA-ALPHA-BARREL, SHEET, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.T.DUFE,D.INGNER,O.HEBY,A.R.KHOMUTOV,L.PERSSON,S.AL-KARADAGHI REVDAT 4 27-DEC-23 2ON3 1 REMARK REVDAT 3 18-OCT-17 2ON3 1 REMARK REVDAT 2 24-FEB-09 2ON3 1 VERSN REVDAT 1 17-JUL-07 2ON3 0 JRNL AUTH V.T.DUFE,D.INGNER,O.HEBY,A.R.KHOMUTOV,L.PERSSON, JRNL AUTH 2 S.AL-KARADAGHI JRNL TITL A STRUCTURAL INSIGHT INTO THE INHIBITION OF HUMAN AND JRNL TITL 2 LEISHMANIA DONOVANI ORNITHINE DECARBOXYLASES BY JRNL TITL 3 1-AMINO-OXY-3-AMINOPROPANE. JRNL REF BIOCHEM.J. V. 405 261 2007 JRNL REFN ISSN 0264-6021 JRNL PMID 17407445 JRNL DOI 10.1042/BJ20070188 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1132 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.560 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.400 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.282 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.875 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.806 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6294 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8514 ; 1.521 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 778 ; 6.500 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 278 ;35.331 ;24.245 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1066 ;20.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4742 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3026 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4308 ; 0.323 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.314 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3976 ; 0.822 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6284 ; 1.481 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2616 ; 1.508 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 2.625 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 421 1 REMARK 3 1 B 7 B 421 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3073 ; 0.06 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3073 ; 0.52 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ON3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18041 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.822 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.13300 REMARK 200 R SYM FOR SHELL (I) : 0.28900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M BIS-TRIS, 2 MM APA, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.27000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.27000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 158 REMARK 465 ASP A 159 REMARK 465 SER A 160 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 VAL A 163 REMARK 465 CYS A 164 REMARK 465 ARG A 165 REMARK 465 LEU A 166 REMARK 465 SER A 167 REMARK 465 LYS A 298 REMARK 465 GLU A 299 REMARK 465 GLN A 300 REMARK 465 THR A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 ASP A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 307 REMARK 465 GLU A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 ASN A 422 REMARK 465 PRO A 423 REMARK 465 ASP A 424 REMARK 465 PHE A 425 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 GLU A 430 REMARK 465 GLU A 431 REMARK 465 GLN A 432 REMARK 465 ASP A 433 REMARK 465 ALA A 434 REMARK 465 SER A 435 REMARK 465 THR A 436 REMARK 465 LEU A 437 REMARK 465 PRO A 438 REMARK 465 VAL A 439 REMARK 465 SER A 440 REMARK 465 CYS A 441 REMARK 465 ALA A 442 REMARK 465 TRP A 443 REMARK 465 GLU A 444 REMARK 465 SER A 445 REMARK 465 GLY A 446 REMARK 465 MET A 447 REMARK 465 LYS A 448 REMARK 465 ARG A 449 REMARK 465 HIS A 450 REMARK 465 ARG A 451 REMARK 465 ALA A 452 REMARK 465 ALA A 453 REMARK 465 CYS A 454 REMARK 465 ALA A 455 REMARK 465 SER A 456 REMARK 465 ALA A 457 REMARK 465 SER A 458 REMARK 465 ILE A 459 REMARK 465 ASN A 460 REMARK 465 VAL A 461 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 PHE B 4 REMARK 465 GLY B 5 REMARK 465 ASN B 6 REMARK 465 ASP B 158 REMARK 465 ASP B 159 REMARK 465 SER B 160 REMARK 465 LYS B 161 REMARK 465 ALA B 162 REMARK 465 VAL B 163 REMARK 465 CYS B 164 REMARK 465 ARG B 165 REMARK 465 LEU B 166 REMARK 465 SER B 167 REMARK 465 LYS B 298 REMARK 465 GLU B 299 REMARK 465 GLN B 300 REMARK 465 THR B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 ASP B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 ASP B 307 REMARK 465 GLU B 308 REMARK 465 SER B 309 REMARK 465 SER B 310 REMARK 465 ASN B 422 REMARK 465 PRO B 423 REMARK 465 ASP B 424 REMARK 465 PHE B 425 REMARK 465 PRO B 426 REMARK 465 PRO B 427 REMARK 465 GLU B 428 REMARK 465 VAL B 429 REMARK 465 GLU B 430 REMARK 465 GLU B 431 REMARK 465 GLN B 432 REMARK 465 ASP B 433 REMARK 465 ALA B 434 REMARK 465 SER B 435 REMARK 465 THR B 436 REMARK 465 LEU B 437 REMARK 465 PRO B 438 REMARK 465 VAL B 439 REMARK 465 SER B 440 REMARK 465 CYS B 441 REMARK 465 ALA B 442 REMARK 465 TRP B 443 REMARK 465 GLU B 444 REMARK 465 SER B 445 REMARK 465 GLY B 446 REMARK 465 MET B 447 REMARK 465 LYS B 448 REMARK 465 ARG B 449 REMARK 465 HIS B 450 REMARK 465 ARG B 451 REMARK 465 ALA B 452 REMARK 465 ALA B 453 REMARK 465 CYS B 454 REMARK 465 ALA B 455 REMARK 465 SER B 456 REMARK 465 ALA B 457 REMARK 465 SER B 458 REMARK 465 ILE B 459 REMARK 465 ASN B 460 REMARK 465 VAL B 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 -76.23 -37.06 REMARK 500 SER A 32 -21.98 -166.11 REMARK 500 SER A 33 -163.01 -49.49 REMARK 500 SER A 34 -115.04 15.30 REMARK 500 ASP A 35 -172.97 -170.92 REMARK 500 ASP A 36 75.95 71.80 REMARK 500 LYS A 37 66.28 -117.24 REMARK 500 LYS A 69 -37.67 -37.71 REMARK 500 SER A 100 2.34 -67.64 REMARK 500 ASP A 134 15.53 -165.09 REMARK 500 HIS A 146 59.93 -160.67 REMARK 500 ASP A 243 45.06 -92.53 REMARK 500 GLU A 274 71.83 -116.97 REMARK 500 GLN A 312 -63.82 -96.31 REMARK 500 ASN A 319 43.38 -98.76 REMARK 500 PRO A 346 27.21 -69.92 REMARK 500 ASP A 347 118.55 133.55 REMARK 500 GLU A 348 -8.91 -147.70 REMARK 500 LYS A 349 108.92 79.19 REMARK 500 THR A 390 -72.68 -119.98 REMARK 500 THR A 396 42.69 -94.92 REMARK 500 GLU B 16 -79.05 -38.21 REMARK 500 SER B 33 -133.46 -76.60 REMARK 500 SER B 34 98.47 -42.04 REMARK 500 ASP B 35 -112.89 -54.06 REMARK 500 ASP B 36 79.93 66.11 REMARK 500 LYS B 37 67.56 -110.47 REMARK 500 ASP B 134 15.92 -161.11 REMARK 500 HIS B 146 59.99 -158.95 REMARK 500 ASP B 243 41.63 -92.15 REMARK 500 GLU B 274 69.24 -118.53 REMARK 500 GLN B 312 -65.44 -96.25 REMARK 500 ASN B 319 44.19 -95.98 REMARK 500 LEU B 330 -68.73 -92.17 REMARK 500 PRO B 346 28.05 -71.69 REMARK 500 ASP B 347 116.36 134.71 REMARK 500 GLU B 348 -8.35 -145.07 REMARK 500 LYS B 349 109.27 78.60 REMARK 500 PRO B 373 155.15 -46.95 REMARK 500 THR B 396 43.42 -99.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 34 ASP A 35 -147.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XAP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XAP B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OO0 RELATED DB: PDB DBREF 2ON3 A 1 461 UNP P11926 DCOR_HUMAN 1 461 DBREF 2ON3 B 1 461 UNP P11926 DCOR_HUMAN 1 461 SEQRES 1 A 461 MET ASN ASN PHE GLY ASN GLU GLU PHE ASP CYS HIS PHE SEQRES 2 A 461 LEU ASP GLU GLY PHE THR ALA LYS ASP ILE LEU ASP GLN SEQRES 3 A 461 LYS ILE ASN GLU VAL SER SER SER ASP ASP LYS ASP ALA SEQRES 4 A 461 PHE TYR VAL ALA ASP LEU GLY ASP ILE LEU LYS LYS HIS SEQRES 5 A 461 LEU ARG TRP LEU LYS ALA LEU PRO ARG VAL THR PRO PHE SEQRES 6 A 461 TYR ALA VAL LYS CYS ASN ASP SER LYS ALA ILE VAL LYS SEQRES 7 A 461 THR LEU ALA ALA THR GLY THR GLY PHE ASP CYS ALA SER SEQRES 8 A 461 LYS THR GLU ILE GLN LEU VAL GLN SER LEU GLY VAL PRO SEQRES 9 A 461 PRO GLU ARG ILE ILE TYR ALA ASN PRO CYS LYS GLN VAL SEQRES 10 A 461 SER GLN ILE LYS TYR ALA ALA ASN ASN GLY VAL GLN MET SEQRES 11 A 461 MET THR PHE ASP SER GLU VAL GLU LEU MET LYS VAL ALA SEQRES 12 A 461 ARG ALA HIS PRO LYS ALA LYS LEU VAL LEU ARG ILE ALA SEQRES 13 A 461 THR ASP ASP SER LYS ALA VAL CYS ARG LEU SER VAL LYS SEQRES 14 A 461 PHE GLY ALA THR LEU ARG THR SER ARG LEU LEU LEU GLU SEQRES 15 A 461 ARG ALA LYS GLU LEU ASN ILE ASP VAL VAL GLY VAL SER SEQRES 16 A 461 PHE HIS VAL GLY SER GLY CYS THR ASP PRO GLU THR PHE SEQRES 17 A 461 VAL GLN ALA ILE SER ASP ALA ARG CYS VAL PHE ASP MET SEQRES 18 A 461 GLY ALA GLU VAL GLY PHE SER MET TYR LEU LEU ASP ILE SEQRES 19 A 461 GLY GLY GLY PHE PRO GLY SER GLU ASP VAL LYS LEU LYS SEQRES 20 A 461 PHE GLU GLU ILE THR GLY VAL ILE ASN PRO ALA LEU ASP SEQRES 21 A 461 LYS TYR PHE PRO SER ASP SER GLY VAL ARG ILE ILE ALA SEQRES 22 A 461 GLU PRO GLY ARG TYR TYR VAL ALA SER ALA PHE THR LEU SEQRES 23 A 461 ALA VAL ASN ILE ILE ALA LYS LYS ILE VAL LEU LYS GLU SEQRES 24 A 461 GLN THR GLY SER ASP ASP GLU ASP GLU SER SER GLU GLN SEQRES 25 A 461 THR PHE MET TYR TYR VAL ASN ASP GLY VAL TYR GLY SER SEQRES 26 A 461 PHE ASN CYS ILE LEU TYR ASP HIS ALA HIS VAL LYS PRO SEQRES 27 A 461 LEU LEU GLN LYS ARG PRO LYS PRO ASP GLU LYS TYR TYR SEQRES 28 A 461 SER SER SER ILE TRP GLY PRO THR CYS ASP GLY LEU ASP SEQRES 29 A 461 ARG ILE VAL GLU ARG CYS ASP LEU PRO GLU MET HIS VAL SEQRES 30 A 461 GLY ASP TRP MET LEU PHE GLU ASN MET GLY ALA TYR THR SEQRES 31 A 461 VAL ALA ALA ALA SER THR PHE ASN GLY PHE GLN ARG PRO SEQRES 32 A 461 THR ILE TYR TYR VAL MET SER GLY PRO ALA TRP GLN LEU SEQRES 33 A 461 MET GLN GLN PHE GLN ASN PRO ASP PHE PRO PRO GLU VAL SEQRES 34 A 461 GLU GLU GLN ASP ALA SER THR LEU PRO VAL SER CYS ALA SEQRES 35 A 461 TRP GLU SER GLY MET LYS ARG HIS ARG ALA ALA CYS ALA SEQRES 36 A 461 SER ALA SER ILE ASN VAL SEQRES 1 B 461 MET ASN ASN PHE GLY ASN GLU GLU PHE ASP CYS HIS PHE SEQRES 2 B 461 LEU ASP GLU GLY PHE THR ALA LYS ASP ILE LEU ASP GLN SEQRES 3 B 461 LYS ILE ASN GLU VAL SER SER SER ASP ASP LYS ASP ALA SEQRES 4 B 461 PHE TYR VAL ALA ASP LEU GLY ASP ILE LEU LYS LYS HIS SEQRES 5 B 461 LEU ARG TRP LEU LYS ALA LEU PRO ARG VAL THR PRO PHE SEQRES 6 B 461 TYR ALA VAL LYS CYS ASN ASP SER LYS ALA ILE VAL LYS SEQRES 7 B 461 THR LEU ALA ALA THR GLY THR GLY PHE ASP CYS ALA SER SEQRES 8 B 461 LYS THR GLU ILE GLN LEU VAL GLN SER LEU GLY VAL PRO SEQRES 9 B 461 PRO GLU ARG ILE ILE TYR ALA ASN PRO CYS LYS GLN VAL SEQRES 10 B 461 SER GLN ILE LYS TYR ALA ALA ASN ASN GLY VAL GLN MET SEQRES 11 B 461 MET THR PHE ASP SER GLU VAL GLU LEU MET LYS VAL ALA SEQRES 12 B 461 ARG ALA HIS PRO LYS ALA LYS LEU VAL LEU ARG ILE ALA SEQRES 13 B 461 THR ASP ASP SER LYS ALA VAL CYS ARG LEU SER VAL LYS SEQRES 14 B 461 PHE GLY ALA THR LEU ARG THR SER ARG LEU LEU LEU GLU SEQRES 15 B 461 ARG ALA LYS GLU LEU ASN ILE ASP VAL VAL GLY VAL SER SEQRES 16 B 461 PHE HIS VAL GLY SER GLY CYS THR ASP PRO GLU THR PHE SEQRES 17 B 461 VAL GLN ALA ILE SER ASP ALA ARG CYS VAL PHE ASP MET SEQRES 18 B 461 GLY ALA GLU VAL GLY PHE SER MET TYR LEU LEU ASP ILE SEQRES 19 B 461 GLY GLY GLY PHE PRO GLY SER GLU ASP VAL LYS LEU LYS SEQRES 20 B 461 PHE GLU GLU ILE THR GLY VAL ILE ASN PRO ALA LEU ASP SEQRES 21 B 461 LYS TYR PHE PRO SER ASP SER GLY VAL ARG ILE ILE ALA SEQRES 22 B 461 GLU PRO GLY ARG TYR TYR VAL ALA SER ALA PHE THR LEU SEQRES 23 B 461 ALA VAL ASN ILE ILE ALA LYS LYS ILE VAL LEU LYS GLU SEQRES 24 B 461 GLN THR GLY SER ASP ASP GLU ASP GLU SER SER GLU GLN SEQRES 25 B 461 THR PHE MET TYR TYR VAL ASN ASP GLY VAL TYR GLY SER SEQRES 26 B 461 PHE ASN CYS ILE LEU TYR ASP HIS ALA HIS VAL LYS PRO SEQRES 27 B 461 LEU LEU GLN LYS ARG PRO LYS PRO ASP GLU LYS TYR TYR SEQRES 28 B 461 SER SER SER ILE TRP GLY PRO THR CYS ASP GLY LEU ASP SEQRES 29 B 461 ARG ILE VAL GLU ARG CYS ASP LEU PRO GLU MET HIS VAL SEQRES 30 B 461 GLY ASP TRP MET LEU PHE GLU ASN MET GLY ALA TYR THR SEQRES 31 B 461 VAL ALA ALA ALA SER THR PHE ASN GLY PHE GLN ARG PRO SEQRES 32 B 461 THR ILE TYR TYR VAL MET SER GLY PRO ALA TRP GLN LEU SEQRES 33 B 461 MET GLN GLN PHE GLN ASN PRO ASP PHE PRO PRO GLU VAL SEQRES 34 B 461 GLU GLU GLN ASP ALA SER THR LEU PRO VAL SER CYS ALA SEQRES 35 B 461 TRP GLU SER GLY MET LYS ARG HIS ARG ALA ALA CYS ALA SEQRES 36 B 461 SER ALA SER ILE ASN VAL HET XAP A 601 6 HET XAP B 601 6 HETNAM XAP 3-AMINOOXY-1-AMINOPROPANE FORMUL 3 XAP 2(C3 H10 N2 O) HELIX 1 1 THR A 19 GLU A 30 1 12 HELIX 2 2 LEU A 45 LEU A 59 1 15 HELIX 3 3 LYS A 69 ASN A 71 5 3 HELIX 4 4 SER A 73 GLY A 84 1 12 HELIX 5 5 SER A 91 SER A 100 1 10 HELIX 6 6 PRO A 104 GLU A 106 5 3 HELIX 7 7 GLN A 116 ASN A 125 1 10 HELIX 8 8 SER A 135 HIS A 146 1 12 HELIX 9 9 THR A 173 LEU A 187 1 15 HELIX 10 10 PRO A 205 VAL A 225 1 21 HELIX 11 11 LYS A 247 PHE A 263 1 17 HELIX 12 12 PRO A 264 GLY A 268 5 5 HELIX 13 13 GLY A 276 ALA A 281 1 6 HELIX 14 14 GLY A 324 LEU A 330 5 7 HELIX 15 15 THR A 390 ALA A 394 5 5 HELIX 16 16 THR A 396 PHE A 400 5 5 HELIX 17 17 SER A 410 GLN A 421 1 12 HELIX 18 18 THR B 19 GLU B 30 1 12 HELIX 19 19 LEU B 45 LEU B 59 1 15 HELIX 20 20 LYS B 69 ASN B 71 5 3 HELIX 21 21 SER B 73 GLY B 84 1 12 HELIX 22 22 SER B 91 SER B 100 1 10 HELIX 23 23 PRO B 104 GLU B 106 5 3 HELIX 24 24 GLN B 116 ASN B 125 1 10 HELIX 25 25 SER B 135 HIS B 146 1 12 HELIX 26 26 THR B 173 LEU B 187 1 15 HELIX 27 27 PRO B 205 VAL B 225 1 21 HELIX 28 28 LYS B 247 VAL B 254 1 8 HELIX 29 29 VAL B 254 PHE B 263 1 10 HELIX 30 30 PRO B 264 GLY B 268 5 5 HELIX 31 31 GLY B 276 ALA B 281 1 6 HELIX 32 32 GLY B 324 LEU B 330 5 7 HELIX 33 33 THR B 390 ALA B 394 5 5 HELIX 34 34 THR B 396 PHE B 400 5 5 HELIX 35 35 GLY B 411 GLN B 421 1 11 SHEET 1 A 6 CYS A 11 PHE A 13 0 SHEET 2 A 6 THR A 404 MET A 409 1 O TYR A 407 N HIS A 12 SHEET 3 A 6 PHE A 40 ASP A 44 1 N TYR A 41 O TYR A 406 SHEET 4 A 6 PHE A 284 VAL A 296 -1 O ALA A 287 N PHE A 40 SHEET 5 A 6 TRP A 380 PHE A 383 -1 O PHE A 383 N LEU A 286 SHEET 6 A 6 PRO A 338 LEU A 340 -1 N LEU A 339 O LEU A 382 SHEET 1 B 7 CYS A 11 PHE A 13 0 SHEET 2 B 7 THR A 404 MET A 409 1 O TYR A 407 N HIS A 12 SHEET 3 B 7 PHE A 40 ASP A 44 1 N TYR A 41 O TYR A 406 SHEET 4 B 7 PHE A 284 VAL A 296 -1 O ALA A 287 N PHE A 40 SHEET 5 B 7 THR A 313 VAL A 318 -1 O TYR A 317 N ILE A 291 SHEET 6 B 7 TYR A 351 TRP A 356 1 O SER A 354 N TYR A 316 SHEET 7 B 7 ARG A 365 LEU A 372 -1 O CYS A 370 N SER A 353 SHEET 1 C 9 VAL A 62 ALA A 67 0 SHEET 2 C 9 GLY A 86 CYS A 89 1 O ASP A 88 N TYR A 66 SHEET 3 C 9 ILE A 108 TYR A 110 1 O ILE A 109 N PHE A 87 SHEET 4 C 9 MET A 130 PHE A 133 1 O MET A 130 N TYR A 110 SHEET 5 C 9 LYS A 150 ILE A 155 1 O ARG A 154 N PHE A 133 SHEET 6 C 9 ASP A 190 PHE A 196 1 O GLY A 193 N LEU A 153 SHEET 7 C 9 LEU A 231 ASP A 233 1 O ASP A 233 N VAL A 194 SHEET 8 C 9 ARG A 270 ALA A 273 1 O ILE A 272 N LEU A 232 SHEET 9 C 9 VAL A 62 ALA A 67 1 N PHE A 65 O ALA A 273 SHEET 1 D 6 CYS B 11 LEU B 14 0 SHEET 2 D 6 THR B 404 SER B 410 1 O TYR B 407 N HIS B 12 SHEET 3 D 6 PHE B 40 ASP B 44 1 N TYR B 41 O TYR B 406 SHEET 4 D 6 PHE B 284 VAL B 296 -1 O ALA B 287 N PHE B 40 SHEET 5 D 6 TRP B 380 PHE B 383 -1 O PHE B 383 N LEU B 286 SHEET 6 D 6 PRO B 338 LEU B 340 -1 N LEU B 339 O LEU B 382 SHEET 1 E 7 CYS B 11 LEU B 14 0 SHEET 2 E 7 THR B 404 SER B 410 1 O TYR B 407 N HIS B 12 SHEET 3 E 7 PHE B 40 ASP B 44 1 N TYR B 41 O TYR B 406 SHEET 4 E 7 PHE B 284 VAL B 296 -1 O ALA B 287 N PHE B 40 SHEET 5 E 7 THR B 313 VAL B 318 -1 O TYR B 317 N ILE B 291 SHEET 6 E 7 TYR B 351 TRP B 356 1 O TRP B 356 N VAL B 318 SHEET 7 E 7 ARG B 365 LEU B 372 -1 O LEU B 372 N TYR B 351 SHEET 1 F 9 VAL B 62 ALA B 67 0 SHEET 2 F 9 GLY B 86 CYS B 89 1 O ASP B 88 N TYR B 66 SHEET 3 F 9 ILE B 108 TYR B 110 1 O ILE B 109 N PHE B 87 SHEET 4 F 9 MET B 130 PHE B 133 1 O MET B 130 N TYR B 110 SHEET 5 F 9 LYS B 150 ILE B 155 1 O VAL B 152 N MET B 131 SHEET 6 F 9 ASP B 190 PHE B 196 1 O GLY B 193 N LEU B 153 SHEET 7 F 9 LEU B 231 ASP B 233 1 O LEU B 231 N VAL B 194 SHEET 8 F 9 ARG B 270 ALA B 273 1 O ILE B 272 N LEU B 232 SHEET 9 F 9 VAL B 62 ALA B 67 1 N PHE B 65 O ALA B 273 SITE 1 AC1 10 SER A 200 GLY A 236 GLY A 237 PHE A 238 SITE 2 AC1 10 GLU A 274 PRO A 275 GLY A 276 ARG A 277 SITE 3 AC1 10 TYR A 278 TYR A 389 SITE 1 AC2 11 HIS B 197 SER B 200 GLY B 236 GLY B 237 SITE 2 AC2 11 PHE B 238 GLU B 274 PRO B 275 GLY B 276 SITE 3 AC2 11 ARG B 277 TYR B 278 TYR B 389 CRYST1 60.540 104.840 137.350 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007281 0.00000