PDB Short entry for 2OO0 HEADER LYASE 25-JAN-07 2OO0 TITLE A STRUCTURAL INSIGHT INTO THE INHIBITION OF HUMAN AND LEISHMANIA TITLE 2 DONOVANI ORNITHINE DECARBOXYLASES BY 3-AMINOOXY-1-AMINOPROPANE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ODC; COMPND 5 EC: 4.1.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ODC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BLR(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXP5-NT/TOPO TA KEYWDS BETA-ALPHA BARREL, SHEET, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.T.DUFE,D.INGNER,A.R.KHOMUTOV,O.HEBY,L.PERSSON,S.AL-KARADAGHI REVDAT 5 30-AUG-23 2OO0 1 REMARK SEQADV REVDAT 4 18-OCT-17 2OO0 1 REMARK REVDAT 3 13-JUL-11 2OO0 1 VERSN REVDAT 2 24-FEB-09 2OO0 1 VERSN REVDAT 1 17-JUL-07 2OO0 0 JRNL AUTH V.T.DUFE,D.INGNER,O.HEBY,A.R.KHOMUTOV,L.PERSSON, JRNL AUTH 2 S.AL-KARADAGHI JRNL TITL A STRUCTURAL INSIGHT INTO THE INHIBITION OF HUMAN AND JRNL TITL 2 LEISHMANIA DONOVANI ORNITHINE DECARBOXYLASES BY JRNL TITL 3 1-AMINO-OXY-3-AMINOPROPANE. JRNL REF BIOCHEM.J. V. 405 261 2007 JRNL REFN ISSN 0264-6021 JRNL PMID 17407445 JRNL DOI 10.1042/BJ20070188 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 85203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6125 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 681 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 523 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6823 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9235 ; 1.179 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 847 ; 5.689 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 307 ;33.262 ;24.332 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1144 ;14.298 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1009 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5180 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3225 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4675 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 523 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4343 ; 0.720 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6777 ; 1.153 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2858 ; 1.691 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2456 ; 2.692 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000041372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.043 REMARK 200 MONOCHROMATOR : BENT GERMANIUM CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1D7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM ACETATE, REMARK 280 O.1M MES, 2MM XAP, 0.3 % CADAVERINE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 288.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.00900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.00900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER WHICH IS MADE UP BY THE TWO REMARK 300 MOLECULES IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 298 REMARK 465 GLU A 299 REMARK 465 GLN A 300 REMARK 465 THR A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 ASP A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 307 REMARK 465 GLU A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 PRO A 423 REMARK 465 ASP A 424 REMARK 465 PHE A 425 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 GLU A 430 REMARK 465 GLU A 431 REMARK 465 GLN A 432 REMARK 465 ASP A 433 REMARK 465 ALA A 434 REMARK 465 SER A 435 REMARK 465 THR A 436 REMARK 465 LEU A 437 REMARK 465 PRO A 438 REMARK 465 VAL A 439 REMARK 465 SER A 440 REMARK 465 CYS A 441 REMARK 465 ALA A 442 REMARK 465 TRP A 443 REMARK 465 GLU A 444 REMARK 465 SER A 445 REMARK 465 GLY A 446 REMARK 465 MET A 447 REMARK 465 LYS A 448 REMARK 465 ARG A 449 REMARK 465 HIS A 450 REMARK 465 ARG A 451 REMARK 465 ALA A 452 REMARK 465 ALA A 453 REMARK 465 CYS A 454 REMARK 465 ALA A 455 REMARK 465 SER A 456 REMARK 465 ALA A 457 REMARK 465 SER A 458 REMARK 465 ILE A 459 REMARK 465 ASN A 460 REMARK 465 VAL A 461 REMARK 465 ALA B -9 REMARK 465 LYS B 298 REMARK 465 GLU B 299 REMARK 465 GLN B 300 REMARK 465 THR B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 ASP B 304 REMARK 465 ASP B 305 REMARK 465 GLU B 306 REMARK 465 ASP B 307 REMARK 465 GLU B 308 REMARK 465 SER B 309 REMARK 465 SER B 310 REMARK 465 PRO B 423 REMARK 465 ASP B 424 REMARK 465 PHE B 425 REMARK 465 PRO B 426 REMARK 465 PRO B 427 REMARK 465 GLU B 428 REMARK 465 VAL B 429 REMARK 465 GLU B 430 REMARK 465 GLU B 431 REMARK 465 GLN B 432 REMARK 465 ASP B 433 REMARK 465 ALA B 434 REMARK 465 SER B 435 REMARK 465 THR B 436 REMARK 465 LEU B 437 REMARK 465 PRO B 438 REMARK 465 VAL B 439 REMARK 465 SER B 440 REMARK 465 CYS B 441 REMARK 465 ALA B 442 REMARK 465 TRP B 443 REMARK 465 GLU B 444 REMARK 465 SER B 445 REMARK 465 GLY B 446 REMARK 465 MET B 447 REMARK 465 LYS B 448 REMARK 465 ARG B 449 REMARK 465 HIS B 450 REMARK 465 ARG B 451 REMARK 465 ALA B 452 REMARK 465 ALA B 453 REMARK 465 CYS B 454 REMARK 465 ALA B 455 REMARK 465 SER B 456 REMARK 465 ALA B 457 REMARK 465 SER B 458 REMARK 465 ILE B 459 REMARK 465 ASN B 460 REMARK 465 VAL B 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 421 ND2 ASN B 422 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 71 102.49 -165.71 REMARK 500 ALA A 111 41.90 -95.31 REMARK 500 ASP A 134 21.40 -152.07 REMARK 500 HIS A 146 61.11 -154.27 REMARK 500 TYR A 230 -6.56 -140.13 REMARK 500 THR A 390 -89.37 -120.00 REMARK 500 ASN B 6 -143.08 62.48 REMARK 500 GLU B 16 95.50 -20.57 REMARK 500 ASN B 71 107.08 -163.39 REMARK 500 ALA B 111 43.79 -92.30 REMARK 500 ASP B 134 20.67 -154.99 REMARK 500 HIS B 146 62.23 -157.06 REMARK 500 SER B 228 66.71 -107.40 REMARK 500 THR B 390 -88.87 -123.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XAP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N2P A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XAP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N2P B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ON3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH 3-AMINOOXY-1-AMINOPROPANE WITHOUT REMARK 900 PLP REMARK 900 RELATED ID: 1D7K RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH PLP DBREF 2OO0 A 1 461 UNP P11926 DCOR_HUMAN 1 461 DBREF 2OO0 B 1 461 UNP P11926 DCOR_HUMAN 1 461 SEQADV 2OO0 ALA A -9 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 GLY A -8 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 GLU A -7 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 ASN A -6 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 LEU A -5 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 TYR A -4 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 PHE A -3 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 GLN A -2 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 SER A -1 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 LEU A 0 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 ALA B -9 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 GLY B -8 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 GLU B -7 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 ASN B -6 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 LEU B -5 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 TYR B -4 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 PHE B -3 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 GLN B -2 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 SER B -1 UNP P11926 CLONING ARTIFACT SEQADV 2OO0 LEU B 0 UNP P11926 CLONING ARTIFACT SEQRES 1 A 471 ALA GLY GLU ASN LEU TYR PHE GLN SER LEU MET ASN ASN SEQRES 2 A 471 PHE GLY ASN GLU GLU PHE ASP CYS HIS PHE LEU ASP GLU SEQRES 3 A 471 GLY PHE THR ALA LYS ASP ILE LEU ASP GLN LYS ILE ASN SEQRES 4 A 471 GLU VAL SER SER SER ASP ASP LYS ASP ALA PHE TYR VAL SEQRES 5 A 471 ALA ASP LEU GLY ASP ILE LEU LYS LYS HIS LEU ARG TRP SEQRES 6 A 471 LEU LYS ALA LEU PRO ARG VAL THR PRO PHE TYR ALA VAL SEQRES 7 A 471 LYS CYS ASN ASP SER LYS ALA ILE VAL LYS THR LEU ALA SEQRES 8 A 471 ALA THR GLY THR GLY PHE ASP CYS ALA SER LYS THR GLU SEQRES 9 A 471 ILE GLN LEU VAL GLN SER LEU GLY VAL PRO PRO GLU ARG SEQRES 10 A 471 ILE ILE TYR ALA ASN PRO CYS LYS GLN VAL SER GLN ILE SEQRES 11 A 471 LYS TYR ALA ALA ASN ASN GLY VAL GLN MET MET THR PHE SEQRES 12 A 471 ASP SER GLU VAL GLU LEU MET LYS VAL ALA ARG ALA HIS SEQRES 13 A 471 PRO LYS ALA LYS LEU VAL LEU ARG ILE ALA THR ASP ASP SEQRES 14 A 471 SER LYS ALA VAL CYS ARG LEU SER VAL LYS PHE GLY ALA SEQRES 15 A 471 THR LEU ARG THR SER ARG LEU LEU LEU GLU ARG ALA LYS SEQRES 16 A 471 GLU LEU ASN ILE ASP VAL VAL GLY VAL SER PHE HIS VAL SEQRES 17 A 471 GLY SER GLY CYS THR ASP PRO GLU THR PHE VAL GLN ALA SEQRES 18 A 471 ILE SER ASP ALA ARG CYS VAL PHE ASP MET GLY ALA GLU SEQRES 19 A 471 VAL GLY PHE SER MET TYR LEU LEU ASP ILE GLY GLY GLY SEQRES 20 A 471 PHE PRO GLY SER GLU ASP VAL LYS LEU LYS PHE GLU GLU SEQRES 21 A 471 ILE THR GLY VAL ILE ASN PRO ALA LEU ASP LYS TYR PHE SEQRES 22 A 471 PRO SER ASP SER GLY VAL ARG ILE ILE ALA GLU PRO GLY SEQRES 23 A 471 ARG TYR TYR VAL ALA SER ALA PHE THR LEU ALA VAL ASN SEQRES 24 A 471 ILE ILE ALA LYS LYS ILE VAL LEU LYS GLU GLN THR GLY SEQRES 25 A 471 SER ASP ASP GLU ASP GLU SER SER GLU GLN THR PHE MET SEQRES 26 A 471 TYR TYR VAL ASN ASP GLY VAL TYR GLY SER PHE ASN CYS SEQRES 27 A 471 ILE LEU TYR ASP HIS ALA HIS VAL LYS PRO LEU LEU GLN SEQRES 28 A 471 LYS ARG PRO LYS PRO ASP GLU LYS TYR TYR SER SER SER SEQRES 29 A 471 ILE TRP GLY PRO THR CYS ASP GLY LEU ASP ARG ILE VAL SEQRES 30 A 471 GLU ARG CYS ASP LEU PRO GLU MET HIS VAL GLY ASP TRP SEQRES 31 A 471 MET LEU PHE GLU ASN MET GLY ALA TYR THR VAL ALA ALA SEQRES 32 A 471 ALA SER THR PHE ASN GLY PHE GLN ARG PRO THR ILE TYR SEQRES 33 A 471 TYR VAL MET SER GLY PRO ALA TRP GLN LEU MET GLN GLN SEQRES 34 A 471 PHE GLN ASN PRO ASP PHE PRO PRO GLU VAL GLU GLU GLN SEQRES 35 A 471 ASP ALA SER THR LEU PRO VAL SER CYS ALA TRP GLU SER SEQRES 36 A 471 GLY MET LYS ARG HIS ARG ALA ALA CYS ALA SER ALA SER SEQRES 37 A 471 ILE ASN VAL SEQRES 1 B 471 ALA GLY GLU ASN LEU TYR PHE GLN SER LEU MET ASN ASN SEQRES 2 B 471 PHE GLY ASN GLU GLU PHE ASP CYS HIS PHE LEU ASP GLU SEQRES 3 B 471 GLY PHE THR ALA LYS ASP ILE LEU ASP GLN LYS ILE ASN SEQRES 4 B 471 GLU VAL SER SER SER ASP ASP LYS ASP ALA PHE TYR VAL SEQRES 5 B 471 ALA ASP LEU GLY ASP ILE LEU LYS LYS HIS LEU ARG TRP SEQRES 6 B 471 LEU LYS ALA LEU PRO ARG VAL THR PRO PHE TYR ALA VAL SEQRES 7 B 471 LYS CYS ASN ASP SER LYS ALA ILE VAL LYS THR LEU ALA SEQRES 8 B 471 ALA THR GLY THR GLY PHE ASP CYS ALA SER LYS THR GLU SEQRES 9 B 471 ILE GLN LEU VAL GLN SER LEU GLY VAL PRO PRO GLU ARG SEQRES 10 B 471 ILE ILE TYR ALA ASN PRO CYS LYS GLN VAL SER GLN ILE SEQRES 11 B 471 LYS TYR ALA ALA ASN ASN GLY VAL GLN MET MET THR PHE SEQRES 12 B 471 ASP SER GLU VAL GLU LEU MET LYS VAL ALA ARG ALA HIS SEQRES 13 B 471 PRO LYS ALA LYS LEU VAL LEU ARG ILE ALA THR ASP ASP SEQRES 14 B 471 SER LYS ALA VAL CYS ARG LEU SER VAL LYS PHE GLY ALA SEQRES 15 B 471 THR LEU ARG THR SER ARG LEU LEU LEU GLU ARG ALA LYS SEQRES 16 B 471 GLU LEU ASN ILE ASP VAL VAL GLY VAL SER PHE HIS VAL SEQRES 17 B 471 GLY SER GLY CYS THR ASP PRO GLU THR PHE VAL GLN ALA SEQRES 18 B 471 ILE SER ASP ALA ARG CYS VAL PHE ASP MET GLY ALA GLU SEQRES 19 B 471 VAL GLY PHE SER MET TYR LEU LEU ASP ILE GLY GLY GLY SEQRES 20 B 471 PHE PRO GLY SER GLU ASP VAL LYS LEU LYS PHE GLU GLU SEQRES 21 B 471 ILE THR GLY VAL ILE ASN PRO ALA LEU ASP LYS TYR PHE SEQRES 22 B 471 PRO SER ASP SER GLY VAL ARG ILE ILE ALA GLU PRO GLY SEQRES 23 B 471 ARG TYR TYR VAL ALA SER ALA PHE THR LEU ALA VAL ASN SEQRES 24 B 471 ILE ILE ALA LYS LYS ILE VAL LEU LYS GLU GLN THR GLY SEQRES 25 B 471 SER ASP ASP GLU ASP GLU SER SER GLU GLN THR PHE MET SEQRES 26 B 471 TYR TYR VAL ASN ASP GLY VAL TYR GLY SER PHE ASN CYS SEQRES 27 B 471 ILE LEU TYR ASP HIS ALA HIS VAL LYS PRO LEU LEU GLN SEQRES 28 B 471 LYS ARG PRO LYS PRO ASP GLU LYS TYR TYR SER SER SER SEQRES 29 B 471 ILE TRP GLY PRO THR CYS ASP GLY LEU ASP ARG ILE VAL SEQRES 30 B 471 GLU ARG CYS ASP LEU PRO GLU MET HIS VAL GLY ASP TRP SEQRES 31 B 471 MET LEU PHE GLU ASN MET GLY ALA TYR THR VAL ALA ALA SEQRES 32 B 471 ALA SER THR PHE ASN GLY PHE GLN ARG PRO THR ILE TYR SEQRES 33 B 471 TYR VAL MET SER GLY PRO ALA TRP GLN LEU MET GLN GLN SEQRES 34 B 471 PHE GLN ASN PRO ASP PHE PRO PRO GLU VAL GLU GLU GLN SEQRES 35 B 471 ASP ALA SER THR LEU PRO VAL SER CYS ALA TRP GLU SER SEQRES 36 B 471 GLY MET LYS ARG HIS ARG ALA ALA CYS ALA SER ALA SER SEQRES 37 B 471 ILE ASN VAL HET ACT A 801 4 HET ACT A 802 4 HET PLP A 600 16 HET XAP A 601 6 HET N2P A 700 7 HET ACT B 803 4 HET PLP B 600 16 HET XAP B 601 6 HET N2P B 700 7 HETNAM ACT ACETATE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM XAP 3-AMINOOXY-1-AMINOPROPANE HETNAM N2P PENTANE-1,5-DIAMINE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 5 PLP 2(C8 H10 N O6 P) FORMUL 6 XAP 2(C3 H10 N2 O) FORMUL 7 N2P 2(C5 H14 N2) FORMUL 12 HOH *523(H2 O) HELIX 1 1 ALA A -9 ASN A 6 1 16 HELIX 2 2 THR A 19 VAL A 31 1 13 HELIX 3 3 LEU A 45 LEU A 59 1 15 HELIX 4 4 LYS A 69 ASN A 71 5 3 HELIX 5 5 SER A 73 GLY A 84 1 12 HELIX 6 6 SER A 91 LEU A 101 1 11 HELIX 7 7 PRO A 104 GLU A 106 5 3 HELIX 8 8 GLN A 116 ASN A 126 1 11 HELIX 9 9 SER A 135 HIS A 146 1 12 HELIX 10 10 THR A 173 LEU A 187 1 15 HELIX 11 11 PRO A 205 GLY A 226 1 22 HELIX 12 12 LYS A 247 PHE A 263 1 17 HELIX 13 13 PRO A 264 GLY A 268 5 5 HELIX 14 14 GLY A 276 ALA A 281 1 6 HELIX 15 15 GLY A 324 PHE A 326 5 3 HELIX 16 16 ASN A 327 ASP A 332 1 6 HELIX 17 17 THR A 390 ALA A 394 5 5 HELIX 18 18 THR A 396 PHE A 400 5 5 HELIX 19 19 GLY A 411 GLN A 421 1 11 HELIX 20 20 GLY B -8 ASN B 6 1 15 HELIX 21 21 THR B 19 VAL B 31 1 13 HELIX 22 22 LEU B 45 LEU B 59 1 15 HELIX 23 23 LYS B 69 ASN B 71 5 3 HELIX 24 24 SER B 73 GLY B 84 1 12 HELIX 25 25 SER B 91 SER B 100 1 10 HELIX 26 26 PRO B 104 GLU B 106 5 3 HELIX 27 27 GLN B 116 ASN B 126 1 11 HELIX 28 28 SER B 135 HIS B 146 1 12 HELIX 29 29 THR B 173 LEU B 187 1 15 HELIX 30 30 PRO B 205 GLY B 226 1 22 HELIX 31 31 LYS B 247 PHE B 263 1 17 HELIX 32 32 PRO B 264 GLY B 268 5 5 HELIX 33 33 GLY B 276 ALA B 281 1 6 HELIX 34 34 GLY B 324 PHE B 326 5 3 HELIX 35 35 ASN B 327 ASP B 332 1 6 HELIX 36 36 THR B 390 ALA B 394 5 5 HELIX 37 37 THR B 396 PHE B 400 5 5 HELIX 38 38 GLY B 411 ASN B 422 1 12 SHEET 1 A 6 CYS A 11 LEU A 14 0 SHEET 2 A 6 THR A 404 SER A 410 1 O TYR A 407 N HIS A 12 SHEET 3 A 6 PHE A 40 ASP A 44 1 N TYR A 41 O THR A 404 SHEET 4 A 6 PHE A 284 VAL A 296 -1 O ALA A 287 N PHE A 40 SHEET 5 A 6 TRP A 380 PHE A 383 -1 O PHE A 383 N LEU A 286 SHEET 6 A 6 LEU A 339 LEU A 340 -1 N LEU A 339 O LEU A 382 SHEET 1 B 7 CYS A 11 LEU A 14 0 SHEET 2 B 7 THR A 404 SER A 410 1 O TYR A 407 N HIS A 12 SHEET 3 B 7 PHE A 40 ASP A 44 1 N TYR A 41 O THR A 404 SHEET 4 B 7 PHE A 284 VAL A 296 -1 O ALA A 287 N PHE A 40 SHEET 5 B 7 THR A 313 VAL A 318 -1 O THR A 313 N VAL A 296 SHEET 6 B 7 TYR A 350 TRP A 356 1 O TRP A 356 N TYR A 316 SHEET 7 B 7 ARG A 365 PRO A 373 -1 O CYS A 370 N SER A 353 SHEET 1 C 9 VAL A 62 ALA A 67 0 SHEET 2 C 9 GLY A 86 CYS A 89 1 O ASP A 88 N TYR A 66 SHEET 3 C 9 ILE A 108 TYR A 110 1 O ILE A 109 N CYS A 89 SHEET 4 C 9 MET A 130 PHE A 133 1 O MET A 130 N TYR A 110 SHEET 5 C 9 LYS A 150 ARG A 154 1 O ARG A 154 N PHE A 133 SHEET 6 C 9 ASP A 190 SER A 195 1 O ASP A 190 N LEU A 151 SHEET 7 C 9 LEU A 231 ASP A 233 1 O ASP A 233 N VAL A 194 SHEET 8 C 9 ARG A 270 ALA A 273 1 O ILE A 272 N LEU A 232 SHEET 9 C 9 VAL A 62 ALA A 67 1 N THR A 63 O ILE A 271 SHEET 1 D 6 CYS B 11 LEU B 14 0 SHEET 2 D 6 THR B 404 SER B 410 1 O TYR B 407 N HIS B 12 SHEET 3 D 6 PHE B 40 ASP B 44 1 N TYR B 41 O TYR B 406 SHEET 4 D 6 PHE B 284 VAL B 296 -1 O ALA B 287 N PHE B 40 SHEET 5 D 6 TRP B 380 PHE B 383 -1 O PHE B 383 N LEU B 286 SHEET 6 D 6 LEU B 339 LEU B 340 -1 N LEU B 339 O LEU B 382 SHEET 1 E 7 CYS B 11 LEU B 14 0 SHEET 2 E 7 THR B 404 SER B 410 1 O TYR B 407 N HIS B 12 SHEET 3 E 7 PHE B 40 ASP B 44 1 N TYR B 41 O TYR B 406 SHEET 4 E 7 PHE B 284 VAL B 296 -1 O ALA B 287 N PHE B 40 SHEET 5 E 7 THR B 313 VAL B 318 -1 O THR B 313 N VAL B 296 SHEET 6 E 7 TYR B 350 TRP B 356 1 O TRP B 356 N VAL B 318 SHEET 7 E 7 ARG B 365 PRO B 373 -1 O CYS B 370 N SER B 353 SHEET 1 F 9 VAL B 62 ALA B 67 0 SHEET 2 F 9 GLY B 86 CYS B 89 1 O ASP B 88 N TYR B 66 SHEET 3 F 9 ILE B 108 TYR B 110 1 O ILE B 109 N CYS B 89 SHEET 4 F 9 MET B 130 PHE B 133 1 O MET B 130 N TYR B 110 SHEET 5 F 9 LYS B 150 ARG B 154 1 O ARG B 154 N PHE B 133 SHEET 6 F 9 ASP B 190 SER B 195 1 O ASP B 190 N LEU B 151 SHEET 7 F 9 LEU B 231 ASP B 233 1 N LEU B 231 O VAL B 192 SHEET 8 F 9 ARG B 270 ALA B 273 1 O ILE B 272 N LEU B 232 SHEET 9 F 9 VAL B 62 ALA B 67 1 N THR B 63 O ILE B 271 SITE 1 AC1 6 SER A 135 GLU A 136 HOH A 931 LYS B 294 SITE 2 AC1 6 ILE B 295 HOH B 835 SITE 1 AC2 6 LYS A 294 ILE A 295 HOH A 812 SER B 135 SITE 2 AC2 6 GLU B 136 HOH B 859 SITE 1 AC3 3 GLN A 210 GLN B 418 GLN B 421 SITE 1 AC4 16 LYS A 69 ASP A 88 ARG A 154 HIS A 197 SITE 2 AC4 16 SER A 200 GLY A 236 GLY A 237 GLU A 274 SITE 3 AC4 16 GLY A 276 ARG A 277 TYR A 389 XAP A 601 SITE 4 AC4 16 HOH A 810 HOH A 816 HOH A 819 CYS B 360 SITE 1 AC5 9 CYS A 164 LEU A 166 TYR A 331 ASP A 332 SITE 2 AC5 9 TYR A 389 PLP A 600 HOH A 842 ASP B 361 SITE 3 AC5 9 HOH B1018 SITE 1 AC6 6 PRO A 239 GLY A 240 SER A 241 VAL A 244 SITE 2 AC6 6 ARG A 277 ASN A 385 SITE 1 AC7 18 CYS A 360 ALA B 67 LYS B 69 ASP B 88 SITE 2 AC7 18 ARG B 154 HIS B 197 SER B 200 GLY B 236 SITE 3 AC7 18 GLY B 237 GLU B 274 PRO B 275 GLY B 276 SITE 4 AC7 18 ARG B 277 TYR B 389 XAP B 601 HOH B 808 SITE 5 AC7 18 HOH B 818 HOH B 868 SITE 1 AC8 8 ASP A 361 CYS B 164 LEU B 166 TYR B 331 SITE 2 AC8 8 ASP B 332 TYR B 389 PLP B 600 HOH B 886 SITE 1 AC9 8 GLY B 201 THR B 203 PRO B 239 VAL B 244 SITE 2 AC9 8 LYS B 245 LEU B 246 HOH B 913 HOH B 967 CRYST1 108.018 87.110 130.080 90.00 91.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009258 0.000000 0.000165 0.00000 SCALE2 0.000000 0.011480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007689 0.00000