PDB Short entry for 2OOR HEADER OXIDOREDUCTASE 26-JAN-07 2OOR TITLE STRUCTURE OF TRANSHYDROGENASE (DI.NAD+)2(DIII.H2NADPH)1 ASYMMETRIC TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P) TRANSHYDROGENASE SUBUNIT ALPHA PART 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1; COMPND 5 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA 1; PROTON- COMPND 6 TRANSLOCATING TRANSHYDROGENASE COMPONENT 1; DI; COMPND 7 EC: 1.6.1.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NAD(P) TRANSHYDROGENASE SUBUNIT BETA; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: RESIDUES 262-464; COMPND 13 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA; COMPND 14 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA; PROTON- COMPND 15 TRANSLOCATING TRANSHYDROGENASE NADP(H)-BINDING COMPONENT; DIII; COMPND 16 EC: 1.6.1.2; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 1085; SOURCE 4 GENE: PNTAA, NNTA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCD1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 12 ORGANISM_TAXID: 1085; SOURCE 13 GENE: PNTB, NNTB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PNIC2 KEYWDS ROSSMANN FOLD; NAD(H)-BINDING SITE; NADP(H)-BINDING SITE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.BHAKTA,J.B.JACKSON REVDAT 6 30-AUG-23 2OOR 1 REMARK REVDAT 5 24-JAN-18 2OOR 1 AUTHOR REVDAT 4 13-JUL-11 2OOR 1 VERSN REVDAT 3 24-FEB-09 2OOR 1 VERSN REVDAT 2 10-APR-07 2OOR 1 JRNL REVDAT 1 13-MAR-07 2OOR 0 JRNL AUTH T.BHAKTA,S.J.WHITEHEAD,J.S.SNAITH,T.R.DAFFORN,J.WILKIE, JRNL AUTH 2 S.RAJESH,S.A.WHITE,J.B.JACKSON JRNL TITL STRUCTURES OF THE DI(2)DIII(1) COMPLEX OF JRNL TITL 2 PROTON-TRANSLOCATING TRANSHYDROGENASE WITH BOUND, INACTIVE JRNL TITL 3 ANALOGUES OF NADH AND NADPH REVEAL ACTIVE SITE GEOMETRIES JRNL REF BIOCHEMISTRY V. 46 3304 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17323922 JRNL DOI 10.1021/BI061843R REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 44314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.54000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.428 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6997 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6669 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9504 ; 1.337 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15522 ; 0.982 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 911 ; 5.845 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;38.461 ;24.788 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1211 ;15.832 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1151 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7626 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1220 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1266 ; 0.140 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6537 ; 0.129 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3307 ; 0.146 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 3720 ; 0.079 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 324 ; 0.168 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.027 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.055 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.102 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.090 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5876 ; 1.127 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1863 ; 0.152 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7322 ; 1.326 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2716 ; 0.705 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2182 ; 1.091 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 269 REMARK 3 RESIDUE RANGE : B 1 B 280 REMARK 3 RESIDUE RANGE : C 30 C 202 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4552 -19.2289 23.5940 REMARK 3 T TENSOR REMARK 3 T11: -0.1292 T22: -0.1017 REMARK 3 T33: -0.2130 T12: 0.0701 REMARK 3 T13: -0.0218 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.0127 L22: 0.6291 REMARK 3 L33: 0.8324 L12: 0.6683 REMARK 3 L13: -0.4505 L23: -0.1561 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.2393 S13: 0.0294 REMARK 3 S21: 0.0549 S22: 0.1074 S23: 0.0297 REMARK 3 S31: -0.0792 S32: 0.0028 S33: -0.0895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44362 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 102.629 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1U2D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 16% PEG 4K, 10% GLYCEROL, REMARK 280 50MM AMMONIUM SULPHATE , PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.09700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.42200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.22550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.42200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.09700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.22550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 379 REMARK 465 THR A 380 REMARK 465 GLY A 381 REMARK 465 GLN A 382 REMARK 465 GLY A 383 REMARK 465 ALA A 384 REMARK 465 ASP B 223 REMARK 465 GLU B 224 REMARK 465 ALA B 225 REMARK 465 MET B 226 REMARK 465 LYS B 227 REMARK 465 THR B 228 REMARK 465 ALA B 229 REMARK 465 GLU B 230 REMARK 465 THR B 231 REMARK 465 ALA B 232 REMARK 465 GLY B 233 REMARK 465 GLY B 234 REMARK 465 TYR B 235 REMARK 465 ALA B 236 REMARK 465 LYS B 237 REMARK 465 GLU B 238 REMARK 465 MET B 239 REMARK 465 GLN B 382 REMARK 465 GLY B 383 REMARK 465 ALA B 384 REMARK 465 ASN C 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 49.88 -94.96 REMARK 500 VAL A 74 -72.86 -90.02 REMARK 500 LEU A 124 39.39 -92.90 REMARK 500 VAL A 180 70.13 -114.23 REMARK 500 VAL A 221 -61.24 -134.18 REMARK 500 ALA A 373 111.49 -162.45 REMARK 500 LYS B 2 70.62 76.54 REMARK 500 ALA B 17 46.23 -96.90 REMARK 500 THR B 220 117.51 -176.45 REMARK 500 GLU B 241 66.89 -104.90 REMARK 500 GLU B 249 -53.73 -140.25 REMARK 500 LYS B 352 64.28 26.33 REMARK 500 ASN C 45 101.50 -160.69 REMARK 500 ALA C 46 105.81 78.86 REMARK 500 ASN C 131 -68.76 -157.16 REMARK 500 THR C 140 -62.39 -94.50 REMARK 500 LYS C 164 136.65 -177.52 REMARK 500 ASN C 182 -56.79 7.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD B 600 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TXP C 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U2D RELATED DB: PDB REMARK 900 RELATED ID: 1HZZ RELATED DB: PDB REMARK 900 RELATED ID: 2OO5 RELATED DB: PDB DBREF 2OOR A 1 384 UNP P0C186 PNTAA_RHORU 1 384 DBREF 2OOR B 1 384 UNP P0C186 PNTAA_RHORU 1 384 DBREF 2OOR C 30 203 UNP P0C188 PNTB_RHORU 291 464 SEQRES 1 A 384 MET LYS ILE ALA ILE PRO LYS GLU ARG ARG PRO GLY GLU SEQRES 2 A 384 ASP ARG VAL ALA ILE SER PRO GLU VAL VAL LYS LYS LEU SEQRES 3 A 384 VAL GLY LEU GLY PHE GLU VAL ILE VAL GLU GLN GLY ALA SEQRES 4 A 384 GLY VAL GLY ALA SER ILE THR ASP ASP ALA LEU THR ALA SEQRES 5 A 384 ALA GLY ALA THR ILE ALA SER THR ALA ALA GLN ALA LEU SEQRES 6 A 384 SER GLN ALA ASP VAL VAL TRP LYS VAL GLN ARG PRO MET SEQRES 7 A 384 THR ALA GLU GLU GLY THR ASP GLU VAL ALA LEU ILE LYS SEQRES 8 A 384 GLU GLY ALA VAL LEU MET CYS HIS LEU GLY ALA LEU THR SEQRES 9 A 384 ASN ARG PRO VAL VAL GLU ALA LEU THR LYS ARG LYS ILE SEQRES 10 A 384 THR ALA TYR ALA MET GLU LEU MET PRO ARG ILE SER ARG SEQRES 11 A 384 ALA GLN SER MET ASP ILE LEU SER SER GLN SER ASN LEU SEQRES 12 A 384 ALA GLY TYR ARG ALA VAL ILE ASP GLY ALA TYR GLU PHE SEQRES 13 A 384 ALA ARG ALA PHE PRO MET MET MET THR ALA ALA GLY THR SEQRES 14 A 384 VAL PRO PRO ALA ARG VAL LEU VAL PHE GLY VAL GLY VAL SEQRES 15 A 384 ALA GLY LEU GLN ALA ILE ALA THR ALA LYS ARG LEU GLY SEQRES 16 A 384 ALA VAL VAL MET ALA THR ASP VAL ARG ALA ALA THR LYS SEQRES 17 A 384 GLU GLN VAL GLU SER LEU GLY GLY LYS PHE ILE THR VAL SEQRES 18 A 384 ASP ASP GLU ALA MET LYS THR ALA GLU THR ALA GLY GLY SEQRES 19 A 384 TYR ALA LYS GLU MET GLY GLU GLU PHE ARG LYS LYS GLN SEQRES 20 A 384 ALA GLU ALA VAL LEU LYS GLU LEU VAL LYS THR ASP ILE SEQRES 21 A 384 ALA ILE THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO SEQRES 22 A 384 VAL LEU ILE THR GLU GLU MET VAL THR LYS MET LYS PRO SEQRES 23 A 384 GLY SER VAL ILE ILE ASP LEU ALA VAL GLU ALA GLY GLY SEQRES 24 A 384 ASN CYS PRO LEU SER GLU PRO GLY LYS ILE VAL VAL LYS SEQRES 25 A 384 HIS GLY VAL LYS ILE VAL GLY HIS THR ASN VAL PRO SER SEQRES 26 A 384 ARG VAL ALA ALA ASP ALA SER PRO LEU PHE ALA LYS ASN SEQRES 27 A 384 LEU LEU ASN PHE LEU THR PRO HIS VAL ASP LYS ASP THR SEQRES 28 A 384 LYS THR LEU VAL MET LYS LEU GLU ASP GLU THR VAL SER SEQRES 29 A 384 GLY THR CYS VAL THR ARG ASP GLY ALA ILE VAL HIS PRO SEQRES 30 A 384 ALA LEU THR GLY GLN GLY ALA SEQRES 1 B 384 MET LYS ILE ALA ILE PRO LYS GLU ARG ARG PRO GLY GLU SEQRES 2 B 384 ASP ARG VAL ALA ILE SER PRO GLU VAL VAL LYS LYS LEU SEQRES 3 B 384 VAL GLY LEU GLY PHE GLU VAL ILE VAL GLU GLN GLY ALA SEQRES 4 B 384 GLY VAL GLY ALA SER ILE THR ASP ASP ALA LEU THR ALA SEQRES 5 B 384 ALA GLY ALA THR ILE ALA SER THR ALA ALA GLN ALA LEU SEQRES 6 B 384 SER GLN ALA ASP VAL VAL TRP LYS VAL GLN ARG PRO MET SEQRES 7 B 384 THR ALA GLU GLU GLY THR ASP GLU VAL ALA LEU ILE LYS SEQRES 8 B 384 GLU GLY ALA VAL LEU MET CYS HIS LEU GLY ALA LEU THR SEQRES 9 B 384 ASN ARG PRO VAL VAL GLU ALA LEU THR LYS ARG LYS ILE SEQRES 10 B 384 THR ALA TYR ALA MET GLU LEU MET PRO ARG ILE SER ARG SEQRES 11 B 384 ALA GLN SER MET ASP ILE LEU SER SER GLN SER ASN LEU SEQRES 12 B 384 ALA GLY TYR ARG ALA VAL ILE ASP GLY ALA TYR GLU PHE SEQRES 13 B 384 ALA ARG ALA PHE PRO MET MET MET THR ALA ALA GLY THR SEQRES 14 B 384 VAL PRO PRO ALA ARG VAL LEU VAL PHE GLY VAL GLY VAL SEQRES 15 B 384 ALA GLY LEU GLN ALA ILE ALA THR ALA LYS ARG LEU GLY SEQRES 16 B 384 ALA VAL VAL MET ALA THR ASP VAL ARG ALA ALA THR LYS SEQRES 17 B 384 GLU GLN VAL GLU SER LEU GLY GLY LYS PHE ILE THR VAL SEQRES 18 B 384 ASP ASP GLU ALA MET LYS THR ALA GLU THR ALA GLY GLY SEQRES 19 B 384 TYR ALA LYS GLU MET GLY GLU GLU PHE ARG LYS LYS GLN SEQRES 20 B 384 ALA GLU ALA VAL LEU LYS GLU LEU VAL LYS THR ASP ILE SEQRES 21 B 384 ALA ILE THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO SEQRES 22 B 384 VAL LEU ILE THR GLU GLU MET VAL THR LYS MET LYS PRO SEQRES 23 B 384 GLY SER VAL ILE ILE ASP LEU ALA VAL GLU ALA GLY GLY SEQRES 24 B 384 ASN CYS PRO LEU SER GLU PRO GLY LYS ILE VAL VAL LYS SEQRES 25 B 384 HIS GLY VAL LYS ILE VAL GLY HIS THR ASN VAL PRO SER SEQRES 26 B 384 ARG VAL ALA ALA ASP ALA SER PRO LEU PHE ALA LYS ASN SEQRES 27 B 384 LEU LEU ASN PHE LEU THR PRO HIS VAL ASP LYS ASP THR SEQRES 28 B 384 LYS THR LEU VAL MET LYS LEU GLU ASP GLU THR VAL SER SEQRES 29 B 384 GLY THR CYS VAL THR ARG ASP GLY ALA ILE VAL HIS PRO SEQRES 30 B 384 ALA LEU THR GLY GLN GLY ALA SEQRES 1 C 174 SER VAL LYS ALA GLY SER ALA GLU ASP ALA ALA PHE ILE SEQRES 2 C 174 MET LYS ASN ALA SER LYS VAL ILE ILE VAL PRO GLY TYR SEQRES 3 C 174 GLY MET ALA VAL ALA GLN ALA GLN HIS ALA LEU ARG GLU SEQRES 4 C 174 MET ALA ASP VAL LEU LYS LYS GLU GLY VAL GLU VAL SER SEQRES 5 C 174 TYR ALA ILE HIS PRO VAL ALA GLY ARG MET PRO GLY HIS SEQRES 6 C 174 MET ASN VAL LEU LEU ALA GLU ALA ASN VAL PRO TYR ASP SEQRES 7 C 174 GLU VAL PHE GLU LEU GLU GLU ILE ASN SER SER PHE GLN SEQRES 8 C 174 THR ALA ASP VAL ALA PHE VAL ILE GLY ALA ASN ASP VAL SEQRES 9 C 174 THR ASN PRO ALA ALA LYS THR ASP PRO SER SER PRO ILE SEQRES 10 C 174 TYR GLY MET PRO ILE LEU ASP VAL GLU LYS ALA GLY THR SEQRES 11 C 174 VAL LEU PHE ILE LYS ARG SER MET ALA SER GLY TYR ALA SEQRES 12 C 174 GLY VAL GLU ASN GLU LEU PHE PHE ARG ASN ASN THR MET SEQRES 13 C 174 MET LEU PHE GLY ASP ALA LYS LYS MET THR GLU GLN ILE SEQRES 14 C 174 VAL GLN ALA MET ASN HET NAD A 500 44 HET NAD B 600 36 HET GOL B 700 6 HET TXP C 400 48 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM TXP 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM 2 TXP PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 6 GOL C3 H8 O3 FORMUL 7 TXP C21 H32 N7 O17 P3 FORMUL 8 HOH *91(H2 O) HELIX 1 1 SER A 19 GLY A 30 1 12 HELIX 2 2 THR A 46 GLY A 54 1 9 HELIX 3 3 THR A 60 SER A 66 1 7 HELIX 4 4 ARG A 106 ARG A 115 1 10 HELIX 5 5 GLU A 123 MET A 125 5 3 HELIX 6 6 ILE A 128 MET A 134 5 7 HELIX 7 7 ASP A 135 PHE A 156 1 22 HELIX 8 8 GLY A 181 LEU A 194 1 14 HELIX 9 9 ALA A 206 LEU A 214 1 9 HELIX 10 10 ASP A 222 LYS A 227 1 6 HELIX 11 11 GLY A 240 VAL A 256 1 17 HELIX 12 12 THR A 277 LYS A 283 1 7 HELIX 13 13 ALA A 294 GLY A 298 5 5 HELIX 14 14 ASN A 322 ARG A 326 5 5 HELIX 15 15 VAL A 327 THR A 344 1 18 HELIX 16 16 PRO A 345 VAL A 347 5 3 HELIX 17 17 ASP A 360 THR A 366 1 7 HELIX 18 18 SER B 19 LEU B 29 1 11 HELIX 19 19 THR B 46 GLY B 54 1 9 HELIX 20 20 THR B 60 GLN B 67 1 8 HELIX 21 21 THR B 79 GLY B 83 5 5 HELIX 22 22 GLU B 86 ILE B 90 5 5 HELIX 23 23 ASN B 105 ARG B 115 1 11 HELIX 24 24 GLU B 123 MET B 125 5 3 HELIX 25 25 ILE B 128 MET B 134 5 7 HELIX 26 26 ASP B 135 PHE B 156 1 22 HELIX 27 27 GLY B 181 LEU B 194 1 14 HELIX 28 28 ALA B 206 SER B 213 1 8 HELIX 29 29 GLU B 242 ALA B 248 1 7 HELIX 30 30 GLU B 249 LYS B 257 1 9 HELIX 31 31 THR B 277 LYS B 283 1 7 HELIX 32 32 ALA B 294 GLY B 298 5 5 HELIX 33 33 ASN B 322 ARG B 326 5 5 HELIX 34 34 VAL B 327 THR B 344 1 18 HELIX 35 35 LYS B 349 LYS B 352 5 4 HELIX 36 36 ASP B 360 THR B 366 1 7 HELIX 37 37 SER C 35 ASN C 45 1 11 HELIX 38 38 GLY C 54 GLN C 61 1 8 HELIX 39 39 ALA C 62 GLY C 77 1 16 HELIX 40 40 GLY C 93 ALA C 102 1 10 HELIX 41 41 PRO C 105 ASP C 107 5 3 HELIX 42 42 LEU C 112 ASN C 116 1 5 HELIX 43 43 SER C 117 THR C 121 5 5 HELIX 44 44 ASN C 131 LYS C 139 5 9 HELIX 45 45 ASP C 153 ALA C 157 5 5 HELIX 46 46 ASN C 176 ARG C 181 5 6 HELIX 47 47 ASP C 190 MET C 202 1 13 SHEET 1 A 7 THR A 56 ALA A 58 0 SHEET 2 A 7 GLU A 32 GLU A 36 1 N VAL A 33 O THR A 56 SHEET 3 A 7 LYS A 2 ILE A 5 1 N ILE A 3 O GLU A 32 SHEET 4 A 7 VAL A 70 GLN A 75 1 O TRP A 72 N ALA A 4 SHEET 5 A 7 VAL A 95 HIS A 99 1 O VAL A 95 N VAL A 71 SHEET 6 A 7 THR A 118 ALA A 121 1 O TYR A 120 N LEU A 96 SHEET 7 A 7 CYS A 367 THR A 369 -1 O VAL A 368 N ALA A 119 SHEET 1 B 7 LYS A 217 PHE A 218 0 SHEET 2 B 7 VAL A 197 THR A 201 1 N VAL A 198 O LYS A 217 SHEET 3 B 7 ARG A 174 PHE A 178 1 N VAL A 175 O MET A 199 SHEET 4 B 7 ILE A 260 THR A 263 1 O ILE A 262 N PHE A 178 SHEET 5 B 7 VAL A 289 ASP A 292 1 O ILE A 291 N ALA A 261 SHEET 6 B 7 VAL A 315 GLY A 319 1 O VAL A 318 N ILE A 290 SHEET 7 B 7 LYS A 308 LYS A 312 -1 N VAL A 310 O ILE A 317 SHEET 1 C 8 THR B 56 ALA B 58 0 SHEET 2 C 8 GLU B 32 GLU B 36 1 N VAL B 33 O THR B 56 SHEET 3 C 8 LYS B 2 ILE B 5 1 N ILE B 3 O ILE B 34 SHEET 4 C 8 VAL B 70 GLN B 75 1 O TRP B 72 N ALA B 4 SHEET 5 C 8 VAL B 95 HIS B 99 1 O HIS B 99 N VAL B 74 SHEET 6 C 8 THR B 118 ALA B 121 1 O TYR B 120 N LEU B 96 SHEET 7 C 8 CYS B 367 ARG B 370 -1 O VAL B 368 N ALA B 119 SHEET 8 C 8 ALA B 373 ILE B 374 -1 O ALA B 373 N ARG B 370 SHEET 1 D 2 MET B 163 THR B 165 0 SHEET 2 D 2 GLY B 168 VAL B 170 -1 O VAL B 170 N MET B 163 SHEET 1 E 7 LYS B 217 PHE B 218 0 SHEET 2 E 7 VAL B 197 THR B 201 1 N VAL B 198 O LYS B 217 SHEET 3 E 7 ARG B 174 PHE B 178 1 N VAL B 175 O MET B 199 SHEET 4 E 7 ILE B 260 THR B 263 1 O ILE B 262 N LEU B 176 SHEET 5 E 7 VAL B 289 ASP B 292 1 O ILE B 291 N ALA B 261 SHEET 6 E 7 VAL B 315 GLY B 319 1 O VAL B 318 N ILE B 290 SHEET 7 E 7 LYS B 308 LYS B 312 -1 N VAL B 310 O ILE B 317 SHEET 1 F 2 VAL B 347 ASP B 348 0 SHEET 2 F 2 THR B 353 LEU B 354 -1 O THR B 353 N ASP B 348 SHEET 1 G 7 ALA C 33 GLY C 34 0 SHEET 2 G 7 THR C 184 PHE C 188 1 O MET C 186 N GLY C 34 SHEET 3 G 7 THR C 159 LYS C 164 1 N VAL C 160 O MET C 185 SHEET 4 G 7 VAL C 124 ILE C 128 1 N VAL C 127 O LEU C 161 SHEET 5 G 7 LYS C 48 PRO C 53 1 N VAL C 52 O PHE C 126 SHEET 6 G 7 GLU C 79 ILE C 84 1 O GLU C 79 N VAL C 49 SHEET 7 G 7 VAL C 109 GLU C 111 1 O PHE C 110 N ILE C 84 CISPEP 1 MET B 1 LYS B 2 0 0.82 CISPEP 2 ASN C 45 ALA C 46 0 -20.10 SITE 1 AC1 26 GLN B 132 GLY C 54 TYR C 55 GLY C 56 SITE 2 AC1 26 VAL C 59 ALA C 60 VAL C 87 ALA C 88 SITE 3 AC1 26 GLY C 89 ARG C 90 MET C 91 PRO C 92 SITE 4 AC1 26 GLY C 129 ALA C 130 ASN C 131 ASP C 132 SITE 5 AC1 26 VAL C 133 LYS C 164 ARG C 165 SER C 166 SITE 6 AC1 26 ALA C 168 SER C 169 GLY C 170 TYR C 171 SITE 7 AC1 26 ASP C 190 ALA C 191 SITE 1 AC2 19 ARG A 127 ILE A 128 ASP A 135 GLY A 181 SITE 2 AC2 19 VAL A 182 ASP A 202 VAL A 203 ARG A 204 SITE 3 AC2 19 GLY A 234 ALA A 236 GLN A 247 THR A 264 SITE 4 AC2 19 ALA A 265 LEU A 266 PRO A 273 LEU A 275 SITE 5 AC2 19 HOH A 517 HOH A 519 HOH A 525 SITE 1 AC3 11 ARG B 127 GLY B 179 GLY B 181 VAL B 182 SITE 2 AC3 11 ASP B 202 VAL B 203 ARG B 204 ALA B 265 SITE 3 AC3 11 LEU B 266 PRO B 273 LEU B 275 SITE 1 AC4 5 ARG B 15 GLN B 75 HIS B 99 GLU B 296 SITE 2 AC4 5 ASN B 322 CRYST1 72.194 74.451 204.844 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004882 0.00000