PDB Short entry for 2OPI HEADER LYASE 29-JAN-07 2OPI TITLE CRYSTAL STRUCTURE OF L-FUCULOSE-1-PHOSPHATE ALDOLASE FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-FUCULOSE-1-PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.2.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: FUCA, BT_1274; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVES; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS BACTEROIDES THETAIOTAOMICRON, L-FUCULOSE-1-PHOSPHATE ALDOLASE, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 2OPI 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2OPI 1 VERSN REVDAT 3 24-FEB-09 2OPI 1 VERSN REVDAT 2 04-DEC-07 2OPI 1 AUTHOR JRNL REVDAT 1 27-FEB-07 2OPI 0 JRNL AUTH C.CHANG,L.VOLKART,J.ABDULLAH,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF L-FUCULOSE-1-PHOSPHATE ALDOLASE FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 18536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1246 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3178 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.438 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3255 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4422 ; 1.294 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.829 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;41.732 ;24.672 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;19.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2436 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1523 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2244 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2106 ; 0.757 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3329 ; 0.987 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 1.518 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1093 ; 2.310 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 21 REMARK 3 RESIDUE RANGE : A 45 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5610 84.5430 12.9340 REMARK 3 T TENSOR REMARK 3 T11: -0.1679 T22: -0.0440 REMARK 3 T33: -0.0362 T12: -0.0690 REMARK 3 T13: -0.0167 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 9.6200 L22: 6.4361 REMARK 3 L33: 4.6237 L12: -2.1419 REMARK 3 L13: -3.3510 L23: 0.3637 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: 0.0760 S13: 0.0219 REMARK 3 S21: -0.0663 S22: 0.1828 S23: -0.6333 REMARK 3 S31: 0.0277 S32: 0.5276 S33: -0.0808 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 44 REMARK 3 RESIDUE RANGE : A 55 A 67 REMARK 3 RESIDUE RANGE : A 87 A 97 REMARK 3 RESIDUE RANGE : A 125 A 132 REMARK 3 RESIDUE RANGE : A 150 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3070 80.9130 8.2520 REMARK 3 T TENSOR REMARK 3 T11: -0.0926 T22: -0.1326 REMARK 3 T33: -0.1211 T12: -0.0013 REMARK 3 T13: 0.0317 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.2320 L22: 2.0516 REMARK 3 L33: 0.8067 L12: -0.2608 REMARK 3 L13: -0.4928 L23: 0.2344 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.0352 S13: -0.0096 REMARK 3 S21: -0.1891 S22: 0.0163 S23: -0.1575 REMARK 3 S31: -0.1176 S32: 0.0529 S33: -0.0378 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 86 REMARK 3 RESIDUE RANGE : A 98 A 106 REMARK 3 RESIDUE RANGE : A 133 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7960 77.9420 7.3650 REMARK 3 T TENSOR REMARK 3 T11: -0.0745 T22: -0.1207 REMARK 3 T33: -0.1004 T12: 0.0161 REMARK 3 T13: 0.0051 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.2775 L22: 0.6882 REMARK 3 L33: 1.0503 L12: 0.3154 REMARK 3 L13: -0.5747 L23: -0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.1240 S12: 0.1869 S13: -0.1548 REMARK 3 S21: -0.0634 S22: 0.0143 S23: -0.0079 REMARK 3 S31: 0.1472 S32: -0.0397 S33: 0.1096 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 124 REMARK 3 RESIDUE RANGE : A 166 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8900 97.7820 5.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: -0.1835 REMARK 3 T33: -0.1525 T12: 0.0193 REMARK 3 T13: -0.0277 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.3137 L22: 3.9280 REMARK 3 L33: 0.8008 L12: -1.9902 REMARK 3 L13: 0.6279 L23: -0.1379 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: 0.1251 S13: 0.3254 REMARK 3 S21: -0.3696 S22: -0.1214 S23: -0.0709 REMARK 3 S31: -0.3375 S32: -0.0916 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 21 REMARK 3 RESIDUE RANGE : B 45 B 54 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5750 88.7140 40.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.0473 REMARK 3 T33: 0.1148 T12: -0.0243 REMARK 3 T13: -0.0906 T23: 0.0859 REMARK 3 L TENSOR REMARK 3 L11: 10.0053 L22: 4.5278 REMARK 3 L33: 4.2347 L12: -5.0293 REMARK 3 L13: 3.1210 L23: 0.9849 REMARK 3 S TENSOR REMARK 3 S11: -0.7411 S12: -0.4906 S13: 0.4727 REMARK 3 S21: 1.6689 S22: 0.3852 S23: -0.6299 REMARK 3 S31: -0.4171 S32: 0.9524 S33: 0.3559 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 44 REMARK 3 RESIDUE RANGE : B 55 B 67 REMARK 3 RESIDUE RANGE : B 87 B 97 REMARK 3 RESIDUE RANGE : B 125 B 132 REMARK 3 RESIDUE RANGE : B 159 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9270 83.9650 44.6020 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: -0.1860 REMARK 3 T33: -0.1289 T12: 0.0045 REMARK 3 T13: -0.0826 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.6707 L22: 1.0690 REMARK 3 L33: 0.7447 L12: -0.2220 REMARK 3 L13: -0.4239 L23: -0.3392 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -0.3139 S13: -0.1679 REMARK 3 S21: 0.5710 S22: -0.0663 S23: -0.1318 REMARK 3 S31: 0.0613 S32: 0.0655 S33: 0.0730 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 86 REMARK 3 RESIDUE RANGE : B 98 B 106 REMARK 3 RESIDUE RANGE : B 133 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9400 83.1990 46.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: -0.1455 REMARK 3 T33: -0.1830 T12: 0.0025 REMARK 3 T13: -0.0457 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 1.8645 L22: 1.6337 REMARK 3 L33: 1.0956 L12: -0.4177 REMARK 3 L13: -0.1266 L23: 0.4800 REMARK 3 S TENSOR REMARK 3 S11: -0.2011 S12: -0.2278 S13: -0.1024 REMARK 3 S21: 0.5279 S22: 0.0696 S23: -0.1301 REMARK 3 S31: -0.0373 S32: 0.0337 S33: 0.1316 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 124 REMARK 3 RESIDUE RANGE : B 166 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2750 81.2080 27.0320 REMARK 3 T TENSOR REMARK 3 T11: -0.1008 T22: -0.1827 REMARK 3 T33: -0.1376 T12: -0.0301 REMARK 3 T13: 0.0267 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 2.0338 L22: 2.0434 REMARK 3 L33: 2.7505 L12: -0.5469 REMARK 3 L13: 0.4681 L23: 0.7558 REMARK 3 S TENSOR REMARK 3 S11: -0.0497 S12: 0.0988 S13: -0.1204 REMARK 3 S21: 0.1817 S22: -0.0089 S23: 0.1388 REMARK 3 S31: 0.0888 S32: 0.0446 S33: 0.0585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041426. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.57400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.14800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.14800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.57400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 AUTHORS STATE THAT THE BIOLOGICAL UNIT IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 200.80358 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.14800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 204 REMARK 465 TYR A 205 REMARK 465 VAL A 206 REMARK 465 LEU A 207 REMARK 465 GLY A 208 REMARK 465 LYS A 209 REMARK 465 LYS A 210 REMARK 465 THR A 211 REMARK 465 LYS A 212 REMARK 465 LYS B 210 REMARK 465 THR B 211 REMARK 465 LYS B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 15 O LEU A 50 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 163 CB CYS A 163 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 25 -123.48 47.93 REMARK 500 ALA A 51 55.65 130.54 REMARK 500 LYS A 52 -38.41 -38.63 REMARK 500 SER A 72 136.93 -37.23 REMARK 500 GLN A 95 67.29 -163.08 REMARK 500 GLU A 97 -83.34 -40.83 REMARK 500 HIS A 158 -66.71 -141.47 REMARK 500 ASP A 190 66.73 -103.49 REMARK 500 LEU A 202 39.34 -67.77 REMARK 500 CYS B 25 -116.20 53.53 REMARK 500 ALA B 51 -117.46 29.02 REMARK 500 LYS B 52 -51.18 106.51 REMARK 500 SER B 62 77.79 -118.67 REMARK 500 SER B 72 137.56 -39.72 REMARK 500 GLU B 97 -72.01 -68.40 REMARK 500 HIS B 158 -65.35 -149.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 50 ALA B 51 148.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC81501 RELATED DB: TARGETDB DBREF 2OPI A 1 212 UNP Q9RQ12 Q9RQ12_BACTN 1 212 DBREF 2OPI B 1 212 UNP Q9RQ12 Q9RQ12_BACTN 1 212 SEQADV 2OPI MSE A 1 UNP Q9RQ12 MET 1 MODIFIED RESIDUE SEQADV 2OPI MSE A 23 UNP Q9RQ12 MET 23 MODIFIED RESIDUE SEQADV 2OPI MSE A 73 UNP Q9RQ12 MET 73 MODIFIED RESIDUE SEQADV 2OPI MSE A 105 UNP Q9RQ12 MET 105 MODIFIED RESIDUE SEQADV 2OPI MSE A 147 UNP Q9RQ12 MET 147 MODIFIED RESIDUE SEQADV 2OPI MSE A 179 UNP Q9RQ12 MET 179 MODIFIED RESIDUE SEQADV 2OPI MSE B 1 UNP Q9RQ12 MET 1 MODIFIED RESIDUE SEQADV 2OPI MSE B 23 UNP Q9RQ12 MET 23 MODIFIED RESIDUE SEQADV 2OPI MSE B 73 UNP Q9RQ12 MET 73 MODIFIED RESIDUE SEQADV 2OPI MSE B 105 UNP Q9RQ12 MET 105 MODIFIED RESIDUE SEQADV 2OPI MSE B 147 UNP Q9RQ12 MET 147 MODIFIED RESIDUE SEQADV 2OPI MSE B 179 UNP Q9RQ12 MET 179 MODIFIED RESIDUE SEQRES 1 A 212 MSE ILE THR ASP GLU HIS ILE GLU LEU PHE LEU ALA GLN SEQRES 2 A 212 ALA HIS ARG TYR GLY ASP ALA LYS LEU MSE LEU CYS SER SEQRES 3 A 212 SER GLY ASN LEU SER TRP ARG ILE GLY GLU GLU ALA LEU SEQRES 4 A 212 ILE SER GLY THR GLY SER TRP VAL PRO THR LEU ALA LYS SEQRES 5 A 212 GLU LYS VAL SER ILE CYS ASN ILE ALA SER GLY THR PRO SEQRES 6 A 212 THR ASN GLY VAL LYS PRO SER MSE GLU SER THR PHE HIS SEQRES 7 A 212 LEU GLY VAL LEU ARG GLU ARG PRO ASP VAL ASN VAL VAL SEQRES 8 A 212 LEU HIS PHE GLN SER GLU TYR ALA THR ALA ILE SER CYS SEQRES 9 A 212 MSE LYS ASN LYS PRO THR ASN PHE ASN VAL THR ALA GLU SEQRES 10 A 212 ILE PRO CYS HIS VAL GLY SER GLU ILE PRO VAL ILE PRO SEQRES 11 A 212 TYR TYR ARG PRO GLY SER PRO GLU LEU ALA LYS ALA VAL SEQRES 12 A 212 VAL GLU ALA MSE LEU LYS HIS ASN SER VAL LEU LEU THR SEQRES 13 A 212 ASN HIS GLY GLN VAL VAL CYS GLY LYS ASP PHE ASP GLN SEQRES 14 A 212 VAL TYR GLU ARG ALA THR PHE PHE GLU MSE ALA CYS ARG SEQRES 15 A 212 ILE ILE VAL GLN SER GLY GLY ASP TYR SER VAL LEU THR SEQRES 16 A 212 PRO GLU GLU ILE GLU ASP LEU GLU ILE TYR VAL LEU GLY SEQRES 17 A 212 LYS LYS THR LYS SEQRES 1 B 212 MSE ILE THR ASP GLU HIS ILE GLU LEU PHE LEU ALA GLN SEQRES 2 B 212 ALA HIS ARG TYR GLY ASP ALA LYS LEU MSE LEU CYS SER SEQRES 3 B 212 SER GLY ASN LEU SER TRP ARG ILE GLY GLU GLU ALA LEU SEQRES 4 B 212 ILE SER GLY THR GLY SER TRP VAL PRO THR LEU ALA LYS SEQRES 5 B 212 GLU LYS VAL SER ILE CYS ASN ILE ALA SER GLY THR PRO SEQRES 6 B 212 THR ASN GLY VAL LYS PRO SER MSE GLU SER THR PHE HIS SEQRES 7 B 212 LEU GLY VAL LEU ARG GLU ARG PRO ASP VAL ASN VAL VAL SEQRES 8 B 212 LEU HIS PHE GLN SER GLU TYR ALA THR ALA ILE SER CYS SEQRES 9 B 212 MSE LYS ASN LYS PRO THR ASN PHE ASN VAL THR ALA GLU SEQRES 10 B 212 ILE PRO CYS HIS VAL GLY SER GLU ILE PRO VAL ILE PRO SEQRES 11 B 212 TYR TYR ARG PRO GLY SER PRO GLU LEU ALA LYS ALA VAL SEQRES 12 B 212 VAL GLU ALA MSE LEU LYS HIS ASN SER VAL LEU LEU THR SEQRES 13 B 212 ASN HIS GLY GLN VAL VAL CYS GLY LYS ASP PHE ASP GLN SEQRES 14 B 212 VAL TYR GLU ARG ALA THR PHE PHE GLU MSE ALA CYS ARG SEQRES 15 B 212 ILE ILE VAL GLN SER GLY GLY ASP TYR SER VAL LEU THR SEQRES 16 B 212 PRO GLU GLU ILE GLU ASP LEU GLU ILE TYR VAL LEU GLY SEQRES 17 B 212 LYS LYS THR LYS MODRES 2OPI MSE A 1 MET SELENOMETHIONINE MODRES 2OPI MSE A 23 MET SELENOMETHIONINE MODRES 2OPI MSE A 73 MET SELENOMETHIONINE MODRES 2OPI MSE A 105 MET SELENOMETHIONINE MODRES 2OPI MSE A 147 MET SELENOMETHIONINE MODRES 2OPI MSE A 179 MET SELENOMETHIONINE MODRES 2OPI MSE B 1 MET SELENOMETHIONINE MODRES 2OPI MSE B 23 MET SELENOMETHIONINE MODRES 2OPI MSE B 73 MET SELENOMETHIONINE MODRES 2OPI MSE B 105 MET SELENOMETHIONINE MODRES 2OPI MSE B 147 MET SELENOMETHIONINE MODRES 2OPI MSE B 179 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 23 8 HET MSE A 73 8 HET MSE A 105 8 HET MSE A 147 8 HET MSE A 179 8 HET MSE B 1 8 HET MSE B 23 8 HET MSE B 73 8 HET MSE B 105 8 HET MSE B 147 8 HET MSE B 179 8 HET SO4 A 301 5 HET SO4 B 302 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *40(H2 O) HELIX 1 1 THR A 3 ALA A 20 1 18 HELIX 2 2 TRP A 46 LEU A 50 5 5 HELIX 3 3 ALA A 51 GLU A 53 5 3 HELIX 4 4 GLU A 74 ARG A 85 1 12 HELIX 5 5 SER A 96 MSE A 105 1 10 HELIX 6 6 ALA A 116 VAL A 122 1 7 HELIX 7 7 SER A 136 MSE A 147 1 12 HELIX 8 8 ASP A 166 SER A 187 1 22 HELIX 9 9 THR A 195 LEU A 202 1 8 HELIX 10 10 THR B 3 ALA B 20 1 18 HELIX 11 11 GLU B 74 ARG B 85 1 12 HELIX 12 12 SER B 96 MSE B 105 1 10 HELIX 13 13 ALA B 116 VAL B 122 1 7 HELIX 14 14 SER B 136 MSE B 147 1 12 HELIX 15 15 ASP B 166 GLY B 188 1 23 HELIX 16 16 THR B 195 LYS B 209 1 15 SHEET 1 A 7 VAL A 55 ASN A 59 0 SHEET 2 A 7 GLU A 37 SER A 41 -1 N ILE A 40 O SER A 56 SHEET 3 A 7 ASN A 29 ILE A 34 -1 N ILE A 34 O GLU A 37 SHEET 4 A 7 VAL A 90 PHE A 94 -1 O HIS A 93 N ASN A 29 SHEET 5 A 7 GLY A 159 GLY A 164 -1 O GLN A 160 N PHE A 94 SHEET 6 A 7 SER A 152 LEU A 155 -1 N LEU A 155 O GLY A 159 SHEET 7 A 7 VAL A 128 ILE A 129 1 N ILE A 129 O LEU A 154 SHEET 1 B 7 VAL B 55 ASN B 59 0 SHEET 2 B 7 GLU B 37 SER B 41 -1 N ILE B 40 O SER B 56 SHEET 3 B 7 ASN B 29 ILE B 34 -1 N ILE B 34 O GLU B 37 SHEET 4 B 7 VAL B 90 PHE B 94 -1 O HIS B 93 N ASN B 29 SHEET 5 B 7 GLY B 159 GLY B 164 -1 O VAL B 162 N LEU B 92 SHEET 6 B 7 SER B 152 LEU B 155 -1 N LEU B 155 O GLY B 159 SHEET 7 B 7 VAL B 128 ILE B 129 1 N ILE B 129 O LEU B 154 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C LEU A 22 N MSE A 23 1555 1555 1.33 LINK C MSE A 23 N LEU A 24 1555 1555 1.33 LINK C SER A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N GLU A 74 1555 1555 1.32 LINK C CYS A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N LYS A 106 1555 1555 1.33 LINK C ALA A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N LEU A 148 1555 1555 1.33 LINK C GLU A 178 N MSE A 179 1555 1555 1.32 LINK C MSE A 179 N ALA A 180 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.34 LINK C LEU B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N LEU B 24 1555 1555 1.33 LINK C SER B 72 N MSE B 73 1555 1555 1.33 LINK C MSE B 73 N GLU B 74 1555 1555 1.33 LINK C CYS B 104 N MSE B 105 1555 1555 1.33 LINK C MSE B 105 N LYS B 106 1555 1555 1.33 LINK C ALA B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N LEU B 148 1555 1555 1.33 LINK C GLU B 178 N MSE B 179 1555 1555 1.33 LINK C MSE B 179 N ALA B 180 1555 1555 1.34 CISPEP 1 LEU A 50 ALA A 51 0 -9.41 SITE 1 AC1 8 ASN A 29 THR A 43 GLY A 44 SER A 72 SITE 2 AC1 8 MSE A 73 HOH A 304 TYR B 205 LYS B 209 SITE 1 AC2 6 ASN B 29 THR B 43 GLY B 44 SER B 72 SITE 2 AC2 6 MSE B 73 GLU B 74 CRYST1 115.934 115.934 73.722 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008626 0.004980 0.000000 0.00000 SCALE2 0.000000 0.009960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013564 0.00000 HETATM 1 N MSE A 1 31.803 75.310 -0.194 1.00 86.64 N HETATM 2 CA MSE A 1 32.938 76.277 -0.102 1.00 87.03 C HETATM 3 C MSE A 1 32.607 77.314 0.967 1.00 85.34 C HETATM 4 O MSE A 1 32.577 78.520 0.699 1.00 85.24 O HETATM 5 CB MSE A 1 33.186 76.981 -1.444 1.00 86.98 C HETATM 6 CG MSE A 1 32.329 76.490 -2.613 1.00 88.42 C HETATM 7 SE MSE A 1 31.385 77.960 -3.533 1.00 90.87 SE HETATM 8 CE MSE A 1 30.570 78.868 -2.006 1.00 88.79 C