PDB Short entry for 2ORC HEADER GENE REGULATING PROTEIN 20-JAN-98 2ORC TITLE CRO REPRESSOR INSERTION MUTANT K56-[DGEVK], NMR, 32 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRO REPRESSOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: RESULTS IN A 71-RESIDUE STABLE MONOMER MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 3 ORGANISM_TAXID: 10710; SOURCE 4 GENE: CRO MUTANT K56-[DGEVK]; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X90; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PUCRO.MDG; SOURCE 9 EXPRESSION_SYSTEM_GENE: CRO MUTANT K56-[DGEVK] KEYWDS GENE REGULATING PROTEIN EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR M.C.MOSSING REVDAT 3 16-MAR-22 2ORC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2ORC 1 VERSN REVDAT 1 27-MAY-98 2ORC 0 JRNL AUTH M.C.MOSSING JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF A DESIGNED MONOMERIC JRNL TITL 2 VARIANT OF THE LAMBDA CRO REPRESSOR. JRNL REF PROTEIN SCI. V. 7 983 1998 JRNL REFN ISSN 0961-8368 JRNL PMID 9568905 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.C.MOSSING,R.T.SAUER REMARK 1 TITL STABLE, MONOMERIC VARIANTS OF LAMBDA CRO OBTAINED BY REMARK 1 TITL 2 INSERTION OF A DESIGNED BETA-HAIRPIN SEQUENCE REMARK 1 REF SCIENCE V. 250 1712 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL REFERENCE. REMARK 4 REMARK 4 2ORC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178426. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; HSQC-NOESY; REMARK 210 HSQC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY/ SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO DISTANCE VIOLATION > 0.5A, NO REMARK 210 DIHEDRAL VIOLATION > 5 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -154.37 55.32 REMARK 500 1 GLN A 3 58.90 -95.72 REMARK 500 1 THR A 6 -174.78 -65.32 REMARK 500 1 PHE A 14 -77.36 -111.09 REMARK 500 1 ALA A 36 -88.13 -76.34 REMARK 500 1 ALA A 46 -19.59 91.01 REMARK 500 1 ASP A 56A 73.72 -4.38 REMARK 500 1 GLU A 56C 128.70 -178.92 REMARK 500 1 PHE A 58 109.99 56.35 REMARK 500 1 LYS A 62 64.43 178.99 REMARK 500 1 THR A 64 -77.27 -138.61 REMARK 500 2 GLU A 2 -156.42 57.84 REMARK 500 2 GLN A 3 65.16 -103.35 REMARK 500 2 THR A 6 -178.30 -51.06 REMARK 500 2 PHE A 14 -67.63 -98.52 REMARK 500 2 LYS A 39 66.83 71.29 REMARK 500 2 SER A 49 101.34 -48.86 REMARK 500 2 LYS A 56 110.41 -160.24 REMARK 500 2 GLU A 56C 98.20 -60.90 REMARK 500 2 VAL A 56D 61.01 -107.19 REMARK 500 2 LYS A 56E 174.90 -58.93 REMARK 500 2 PRO A 57 -79.72 -88.98 REMARK 500 2 PHE A 58 122.31 59.91 REMARK 500 2 LYS A 62 55.82 -168.75 REMARK 500 2 LYS A 63 -161.00 -58.82 REMARK 500 2 THR A 64 -165.06 -62.95 REMARK 500 3 GLU A 2 94.54 -47.14 REMARK 500 3 GLN A 3 -129.11 -139.60 REMARK 500 3 THR A 6 -176.36 -49.46 REMARK 500 3 PHE A 14 -77.52 -122.95 REMARK 500 3 ASN A 31 -7.76 -59.99 REMARK 500 3 LYS A 39 45.74 177.18 REMARK 500 3 ILE A 44 43.87 -89.29 REMARK 500 3 ASN A 45 -151.53 -105.45 REMARK 500 3 ASP A 47 -53.71 120.61 REMARK 500 3 ASP A 56A -90.10 50.98 REMARK 500 3 GLU A 56C 97.03 -162.19 REMARK 500 3 SER A 60 -167.50 -62.62 REMARK 500 3 ASN A 61 55.13 37.12 REMARK 500 3 LYS A 62 49.64 -175.07 REMARK 500 3 LYS A 63 -95.15 -136.38 REMARK 500 3 THR A 64 -92.28 -116.39 REMARK 500 4 GLU A 2 109.76 -166.71 REMARK 500 4 GLN A 3 58.85 -100.40 REMARK 500 4 LYS A 8 -63.79 -90.56 REMARK 500 4 PHE A 14 -75.94 -117.95 REMARK 500 4 ASN A 45 -123.78 -103.40 REMARK 500 4 ALA A 46 29.09 40.65 REMARK 500 4 ASP A 47 64.35 72.78 REMARK 500 4 ASP A 56A 93.82 -40.57 REMARK 500 REMARK 500 THIS ENTRY HAS 414 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 4 0.15 SIDE CHAIN REMARK 500 1 ARG A 13 0.23 SIDE CHAIN REMARK 500 1 ARG A 38 0.18 SIDE CHAIN REMARK 500 2 ARG A 4 0.14 SIDE CHAIN REMARK 500 2 ARG A 13 0.31 SIDE CHAIN REMARK 500 2 ARG A 38 0.10 SIDE CHAIN REMARK 500 3 ARG A 4 0.22 SIDE CHAIN REMARK 500 3 ARG A 13 0.32 SIDE CHAIN REMARK 500 3 ARG A 38 0.18 SIDE CHAIN REMARK 500 4 ARG A 4 0.29 SIDE CHAIN REMARK 500 4 ARG A 13 0.28 SIDE CHAIN REMARK 500 4 ARG A 38 0.30 SIDE CHAIN REMARK 500 5 ARG A 4 0.32 SIDE CHAIN REMARK 500 5 ARG A 13 0.25 SIDE CHAIN REMARK 500 5 ARG A 38 0.27 SIDE CHAIN REMARK 500 6 ARG A 38 0.32 SIDE CHAIN REMARK 500 7 ARG A 4 0.26 SIDE CHAIN REMARK 500 7 ARG A 13 0.32 SIDE CHAIN REMARK 500 7 ARG A 38 0.32 SIDE CHAIN REMARK 500 8 ARG A 4 0.26 SIDE CHAIN REMARK 500 8 ARG A 13 0.32 SIDE CHAIN REMARK 500 8 ARG A 38 0.12 SIDE CHAIN REMARK 500 9 ARG A 4 0.32 SIDE CHAIN REMARK 500 9 ARG A 13 0.30 SIDE CHAIN REMARK 500 9 ARG A 38 0.32 SIDE CHAIN REMARK 500 10 ARG A 4 0.30 SIDE CHAIN REMARK 500 10 ARG A 13 0.08 SIDE CHAIN REMARK 500 11 ARG A 4 0.29 SIDE CHAIN REMARK 500 11 ARG A 13 0.28 SIDE CHAIN REMARK 500 11 ARG A 38 0.24 SIDE CHAIN REMARK 500 12 ARG A 4 0.23 SIDE CHAIN REMARK 500 12 ARG A 13 0.31 SIDE CHAIN REMARK 500 12 ARG A 38 0.32 SIDE CHAIN REMARK 500 13 ARG A 4 0.32 SIDE CHAIN REMARK 500 13 ARG A 13 0.24 SIDE CHAIN REMARK 500 13 ARG A 38 0.22 SIDE CHAIN REMARK 500 14 ARG A 4 0.31 SIDE CHAIN REMARK 500 14 ARG A 13 0.30 SIDE CHAIN REMARK 500 14 ARG A 38 0.23 SIDE CHAIN REMARK 500 15 ARG A 4 0.29 SIDE CHAIN REMARK 500 15 ARG A 13 0.29 SIDE CHAIN REMARK 500 15 ARG A 38 0.26 SIDE CHAIN REMARK 500 16 ARG A 13 0.28 SIDE CHAIN REMARK 500 17 ARG A 4 0.31 SIDE CHAIN REMARK 500 17 ARG A 13 0.12 SIDE CHAIN REMARK 500 17 ARG A 38 0.26 SIDE CHAIN REMARK 500 18 ARG A 4 0.31 SIDE CHAIN REMARK 500 18 ARG A 13 0.31 SIDE CHAIN REMARK 500 18 ARG A 38 0.25 SIDE CHAIN REMARK 500 19 ARG A 4 0.24 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 88 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2ORC A 1 66 UNP P03040 RCRO_LAMBD 1 66 SEQADV 2ORC GLU A 54 UNP P03040 INSERTION SEQADV 2ORC VAL A 55 UNP P03040 INSERTION SEQADV 2ORC LYS A 56 UNP P03040 INSERTION SEQADV 2ORC ASP A 56A UNP P03040 INSERTION SEQADV 2ORC GLY A 56B UNP P03040 INSERTION SEQRES 1 A 71 MET GLU GLN ARG ILE THR LEU LYS ASP TYR ALA MET ARG SEQRES 2 A 71 PHE GLY GLN THR LYS THR ALA LYS ASP LEU GLY VAL TYR SEQRES 3 A 71 GLN SER ALA ILE ASN LYS ALA ILE HIS ALA GLY ARG LYS SEQRES 4 A 71 ILE PHE LEU THR ILE ASN ALA ASP GLY SER VAL TYR ALA SEQRES 5 A 71 GLU GLU VAL LYS ASP GLY GLU VAL LYS PRO PHE PRO SER SEQRES 6 A 71 ASN LYS LYS THR THR ALA HELIX 1 1 LYS A 8 ARG A 13 1 6 HELIX 2 2 GLN A 16 LEU A 23 1 8 HELIX 3 3 GLN A 27 HIS A 35 1 9 SHEET 1 A 2 GLN A 3 THR A 6 0 SHEET 2 A 2 PHE A 41 ILE A 44 -1 N ILE A 44 O GLN A 3 CISPEP 1 PHE A 58 PRO A 59 1 0.11 CISPEP 2 PHE A 58 PRO A 59 2 -0.03 CISPEP 3 PHE A 58 PRO A 59 3 0.15 CISPEP 4 PHE A 58 PRO A 59 4 0.16 CISPEP 5 PHE A 58 PRO A 59 5 0.11 CISPEP 6 PHE A 58 PRO A 59 6 -0.07 CISPEP 7 PHE A 58 PRO A 59 7 -0.44 CISPEP 8 PHE A 58 PRO A 59 8 -0.03 CISPEP 9 PHE A 58 PRO A 59 9 -0.68 CISPEP 10 PHE A 58 PRO A 59 10 0.10 CISPEP 11 PHE A 58 PRO A 59 11 -0.04 CISPEP 12 PHE A 58 PRO A 59 12 0.35 CISPEP 13 PHE A 58 PRO A 59 13 -0.17 CISPEP 14 PHE A 58 PRO A 59 14 -0.19 CISPEP 15 PHE A 58 PRO A 59 15 -0.32 CISPEP 16 PHE A 58 PRO A 59 16 0.12 CISPEP 17 PHE A 58 PRO A 59 17 0.08 CISPEP 18 PHE A 58 PRO A 59 18 0.09 CISPEP 19 PHE A 58 PRO A 59 19 -0.05 CISPEP 20 PHE A 58 PRO A 59 20 -0.31 CISPEP 21 PHE A 58 PRO A 59 21 0.07 CISPEP 22 PHE A 58 PRO A 59 22 0.10 CISPEP 23 PHE A 58 PRO A 59 23 -0.03 CISPEP 24 PHE A 58 PRO A 59 24 0.20 CISPEP 25 PHE A 58 PRO A 59 25 -0.13 CISPEP 26 PHE A 58 PRO A 59 26 0.09 CISPEP 27 PHE A 58 PRO A 59 27 0.16 CISPEP 28 PHE A 58 PRO A 59 28 0.04 CISPEP 29 PHE A 58 PRO A 59 29 0.20 CISPEP 30 PHE A 58 PRO A 59 30 -0.05 CISPEP 31 PHE A 58 PRO A 59 31 -0.06 CISPEP 32 PHE A 58 PRO A 59 32 0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000