PDB Short entry for 2OXR HEADER HYDROLASE 21-FEB-07 2OXR TITLE PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GDP AND MG BOUND FORM FROM TITLE 2 PYROCOCCUS ABYSSI (AFTER GTP HYDROLYSIS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP(GTP)BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 GENE: PAB0955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCRT7/NT-TOPO KEYWDS HYDROLASE, GTP BINDING PROTEIN, GTPASE, P-LOOP, ROSSMANN FOLD, GDP EXPDTA X-RAY DIFFRACTION AUTHOR S.GRAS,P.CARPENTIER,J.ARMENGAUD,D.HOUSSET REVDAT 6 30-AUG-23 2OXR 1 REMARK SEQADV LINK REVDAT 5 12-NOV-14 2OXR 1 KEYWDS REVDAT 4 13-JUL-11 2OXR 1 VERSN REVDAT 3 24-FEB-09 2OXR 1 VERSN REVDAT 2 26-JUN-07 2OXR 1 JRNL REVDAT 1 24-APR-07 2OXR 0 JRNL AUTH S.GRAS,V.CHAUMONT,B.FERNANDEZ,P.CARPENTIER, JRNL AUTH 2 F.CHARRIER-SAVOURNIN,S.SCHMITT,C.PINEAU,D.FLAMENT,A.HECKER, JRNL AUTH 3 P.FORTERRE,J.ARMENGAUD,D.HOUSSET JRNL TITL STRUCTURAL INSIGHTS INTO A NEW HOMODIMERIC SELF-ACTIVATED JRNL TITL 2 GTPASE FAMILY. JRNL REF EMBO REP. V. 8 569 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17468740 JRNL DOI 10.1038/SJ.EMBOR.7400958 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 9913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39000 REMARK 3 B22 (A**2) : 2.39000 REMARK 3 B33 (A**2) : -3.58000 REMARK 3 B12 (A**2) : 1.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.617 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2081 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2821 ; 1.190 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;37.452 ;24.082 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;18.699 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1555 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 883 ; 0.270 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1356 ; 0.332 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.292 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.333 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.377 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 0.960 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1996 ; 1.685 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 854 ; 1.220 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 825 ; 1.744 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : 0.40400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1YRB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-NA CITRATE PH 5.6, 15% PEG REMARK 280 4000, 0.2M AMMONIUM ACETATE, 20MM DTT, 0.65MM GTP, 8MG/ML REMARK 280 PROTEIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.67467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.83733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.83733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.67467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.51200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 487 REMARK 465 ARG A 488 REMARK 465 GLY A 489 REMARK 465 SER A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 GLY A 497 REMARK 465 CYS A 244 REMARK 465 GLY A 245 REMARK 465 ASP A 246 REMARK 465 LEU A 247 REMARK 465 THR A 248 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1B GDP A 502 O HOH A 533 1.87 REMARK 500 O GLU A 45 O HOH A 550 2.00 REMARK 500 OG SER A 131 O HOH A 503 2.11 REMARK 500 SG CYS A 242 O HOH A 517 2.13 REMARK 500 O1B GDP A 502 O HOH A 505 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 531 O HOH A 531 6765 1.86 REMARK 500 OE1 GLN A 105 O HOH A 529 4556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 500 73.36 46.60 REMARK 500 GLU A 25 4.45 -63.31 REMARK 500 ARG A 61 19.11 -69.49 REMARK 500 VAL A 167 -9.88 -57.19 REMARK 500 GLU A 172 -27.12 104.84 REMARK 500 ALA A 203 -1.88 162.83 REMARK 500 CYS A 207 26.60 -64.44 REMARK 500 SER A 208 93.45 -49.75 REMARK 500 MET A 210 18.39 -49.14 REMARK 500 GLU A 212 -145.11 64.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 14 OG1 REMARK 620 2 GDP A 502 O1B 110.8 REMARK 620 3 GDP A 502 O3B 63.4 49.3 REMARK 620 4 HOH A 505 O 115.1 43.3 78.2 REMARK 620 5 HOH A 554 O 77.5 96.3 98.2 57.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YRB RELATED DB: PDB REMARK 900 PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GDP AND MG BOUND FORM FROM REMARK 900 PYROCOCCUS ABYSSI REMARK 900 RELATED ID: 1YRA RELATED DB: PDB REMARK 900 PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GDP BOUND FORM FROM REMARK 900 PYROCOCCUS ABYSSI REMARK 900 RELATED ID: 1YR9 RELATED DB: PDB REMARK 900 PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GDP AND PO4 BOUND FORM FROM REMARK 900 PYROCOCCUS ABYSSI REMARK 900 RELATED ID: 1YR8 RELATED DB: PDB REMARK 900 PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GTP BOUND FORM FROM REMARK 900 PYROCOCCUS ABYSSI REMARK 900 RELATED ID: 1YR7 RELATED DB: PDB REMARK 900 PAB0955 CRYSTAL STRUCTURE : A GTPASE IN GTP-GAMMA-S BOUND FORM FROM REMARK 900 PYROCOCCUS ABYSSI REMARK 900 RELATED ID: 1YR6 RELATED DB: PDB REMARK 900 PAB0955 CRYSTAL STRUCTURE : A GTPASE IN APO FORM FROM PYROCOCCUS REMARK 900 ABYSSI DBREF 2OXR A 1 248 UNP Q9UYR9 Q9UYR9_PYRAB 30 277 SEQADV 2OXR MET A 487 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR ARG A 488 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR GLY A 489 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR SER A 490 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR HIS A 491 UNP Q9UYR9 EXPRESSION TAG SEQADV 2OXR HIS A 492 UNP Q9UYR9 EXPRESSION TAG SEQADV 2OXR HIS A 493 UNP Q9UYR9 EXPRESSION TAG SEQADV 2OXR HIS A 494 UNP Q9UYR9 EXPRESSION TAG SEQADV 2OXR HIS A 495 UNP Q9UYR9 EXPRESSION TAG SEQADV 2OXR HIS A 496 UNP Q9UYR9 EXPRESSION TAG SEQADV 2OXR GLY A 497 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR MET A 498 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR ALA A 499 UNP Q9UYR9 CLONING ARTIFACT SEQADV 2OXR SER A 500 UNP Q9UYR9 CLONING ARTIFACT SEQRES 1 A 262 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 262 SER MET ILE VAL VAL PHE VAL GLY THR ALA GLY SER GLY SEQRES 3 A 262 LYS THR THR LEU THR GLY GLU PHE GLY ARG TYR LEU GLU SEQRES 4 A 262 ASP ASN TYR LYS VAL ALA TYR VAL ASN LEU ASP THR GLY SEQRES 5 A 262 VAL LYS GLU LEU PRO TYR GLU PRO SER ILE ASP VAL ARG SEQRES 6 A 262 GLU PHE VAL THR VAL GLU GLU ILE MET ARG GLU GLY TYR SEQRES 7 A 262 GLY PRO ASN GLY ALA ILE VAL GLU SER TYR ASP ARG LEU SEQRES 8 A 262 MET GLU LYS PHE ASN GLU TYR LEU ASN LYS ILE LEU ARG SEQRES 9 A 262 LEU GLU LYS GLU ASN ASP TYR VAL LEU ILE ASP THR PRO SEQRES 10 A 262 GLY GLN MET GLU THR PHE LEU PHE HIS GLU PHE GLY VAL SEQRES 11 A 262 ARG LEU MET GLU ASN LEU PRO TYR PRO LEU VAL VAL TYR SEQRES 12 A 262 ILE SER ASP PRO GLU ILE LEU LYS LYS PRO ASN ASP TYR SEQRES 13 A 262 CYS PHE VAL ARG PHE PHE ALA LEU LEU ILE ASP LEU ARG SEQRES 14 A 262 LEU GLY ALA THR THR ILE PRO ALA LEU ASN LYS VAL ASP SEQRES 15 A 262 LEU LEU SER GLU GLU GLU LYS GLU ARG HIS ARG LYS TYR SEQRES 16 A 262 PHE GLU ASP ILE ASP TYR LEU THR ALA ARG LEU LYS LEU SEQRES 17 A 262 ASP PRO SER MET GLN GLY LEU MET ALA TYR LYS MET CYS SEQRES 18 A 262 SER MET MET THR GLU VAL LEU PRO PRO VAL ARG VAL LEU SEQRES 19 A 262 TYR LEU SER ALA LYS THR ARG GLU GLY PHE GLU ASP LEU SEQRES 20 A 262 GLU THR LEU ALA TYR GLU HIS TYR CYS THR CYS GLY ASP SEQRES 21 A 262 LEU THR HET MG A 501 1 HET GDP A 502 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *56(H2 O) HELIX 1 1 GLY A 12 GLU A 25 1 14 HELIX 2 2 ARG A 51 PHE A 53 5 3 HELIX 3 3 THR A 55 ARG A 61 1 7 HELIX 4 4 GLY A 65 MET A 78 1 14 HELIX 5 5 LYS A 80 GLU A 92 1 13 HELIX 6 6 GLN A 105 HIS A 112 1 8 HELIX 7 7 HIS A 112 ASN A 121 1 10 HELIX 8 8 ASP A 132 LEU A 136 5 5 HELIX 9 9 LYS A 138 GLY A 157 1 20 HELIX 10 10 LYS A 166 LEU A 170 5 5 HELIX 11 11 GLU A 172 ASP A 184 1 13 HELIX 12 12 ASP A 184 LYS A 193 1 10 HELIX 13 13 SER A 197 MET A 202 1 6 HELIX 14 14 GLY A 229 THR A 243 1 15 SHEET 1 A 7 ILE A 48 ASP A 49 0 SHEET 2 A 7 VAL A 30 ASN A 34 1 N ASN A 34 O ILE A 48 SHEET 3 A 7 TYR A 97 ASP A 101 1 O TYR A 97 N ALA A 31 SHEET 4 A 7 MET A 1 VAL A 6 1 N VAL A 3 O ILE A 100 SHEET 5 A 7 LEU A 126 SER A 131 1 O VAL A 128 N VAL A 6 SHEET 6 A 7 THR A 160 LEU A 164 1 O ILE A 161 N VAL A 127 SHEET 7 A 7 LEU A 220 TYR A 221 1 O LEU A 220 N LEU A 164 SSBOND 1 CYS A 143 CYS A 207 1555 1555 3.00 LINK OG1 THR A 14 MG MG A 501 1555 1555 2.33 LINK MG MG A 501 O1B GDP A 502 1555 1555 3.12 LINK MG MG A 501 O3B GDP A 502 1555 1555 2.78 LINK MG MG A 501 O HOH A 505 1555 1555 2.31 LINK MG MG A 501 O HOH A 554 1555 1555 2.86 SITE 1 AC1 5 THR A 14 VAL A 39 GDP A 502 HOH A 505 SITE 2 AC1 5 HOH A 554 SITE 1 AC2 15 SER A 11 GLY A 12 LYS A 13 THR A 14 SITE 2 AC2 15 THR A 15 ASN A 165 LYS A 166 ASP A 168 SITE 3 AC2 15 LEU A 169 SER A 223 ALA A 224 LYS A 225 SITE 4 AC2 15 MG A 501 HOH A 505 HOH A 533 CRYST1 60.189 60.189 116.512 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016614 0.009592 0.000000 0.00000 SCALE2 0.000000 0.019185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008583 0.00000