PDB Short entry for 2P3O HEADER VIRAL PROTEIN,TRANSFERASE 09-MAR-07 2P3O TITLE CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH 7MEGPPPA TITLE 2 AND S-ADENOSYL-L-HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE II METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-296; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 STRAIN: TYPE 2 NEW GUINEA; SOURCE 5 GENE: NSP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS VIZIER; VIRAL ENZYMES INVOLVED IN REPLICATION; DENGUE VIRUS KEYWDS 2 METHYLTRANSFERASE; STRUCTURAL GENOMICS; MARSEILLES STRUCTURAL KEYWDS 3 GENOMICS PROGRAM @ AFMB; MSGP, VIRAL PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.EGLOFF,MARSEILLES STRUCTURAL GENOMICS PROGRAM @ AFMB (MSGP) REVDAT 5 30-AUG-23 2P3O 1 REMARK SEQADV REVDAT 4 13-JUL-11 2P3O 1 VERSN REVDAT 3 24-FEB-09 2P3O 1 VERSN REVDAT 2 20-NOV-07 2P3O 1 JRNL REVDAT 1 28-AUG-07 2P3O 0 JRNL AUTH M.P.EGLOFF,E.DECROLY,H.MALET,B.SELISKO,D.BENARROCH,F.FERRON, JRNL AUTH 2 B.CANARD JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF METHYLATION AND 5'-RNA JRNL TITL 2 SEQUENCE REQUIREMENTS OF SHORT CAPPED RNAS BY THE JRNL TITL 3 METHYLTRANSFERASE DOMAIN OF DENGUE VIRUS NS5 JRNL REF J.MOL.BIOL. V. 372 723 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17686489 JRNL DOI 10.1016/J.JMB.2007.07.005 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 9409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.100 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.20000 REMARK 3 B22 (A**2) : -2.20000 REMARK 3 B33 (A**2) : 3.30000 REMARK 3 B12 (A**2) : -1.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.993 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2194 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2982 ; 1.615 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 6.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;36.239 ;23.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;18.451 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.944 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1607 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 873 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1433 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.281 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1309 ; 0.685 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2059 ; 1.161 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1028 ; 1.670 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 923 ; 2.814 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P3O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000041925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.993 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.756 REMARK 200 RESOLUTION RANGE LOW (A) : 27.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1L9K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, 1.2 M LITHIUM SULFATE, PH 5.8, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.77667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.55333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.55333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.77667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -271.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ARG A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 6 REMARK 465 ILE A 265 REMARK 465 GLY A 266 REMARK 465 ILE A 267 REMARK 465 GLU A 268 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 THR A 271 REMARK 465 PRO A 272 REMARK 465 ASN A 273 REMARK 465 LEU A 274 REMARK 465 ASP A 275 REMARK 465 ILE A 276 REMARK 465 ILE A 277 REMARK 465 GLY A 278 REMARK 465 LYS A 279 REMARK 465 ARG A 280 REMARK 465 ILE A 281 REMARK 465 GLU A 282 REMARK 465 LYS A 283 REMARK 465 ILE A 284 REMARK 465 LYS A 285 REMARK 465 GLN A 286 REMARK 465 GLU A 287 REMARK 465 HIS A 288 REMARK 465 GLU A 289 REMARK 465 THR A 290 REMARK 465 SER A 291 REMARK 465 TRP A 292 REMARK 465 HIS A 293 REMARK 465 TYR A 294 REMARK 465 ASP A 295 REMARK 465 GLN A 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 95 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 99.98 -68.44 REMARK 500 GLU A 67 5.72 -50.76 REMARK 500 ASN A 69 30.10 77.28 REMARK 500 GLU A 74 146.64 -175.50 REMARK 500 SER A 173 -77.86 -100.22 REMARK 500 ASN A 174 -77.98 -155.70 REMARK 500 THR A 244 43.90 -97.11 REMARK 500 HIS A 247 -17.66 -141.71 REMARK 500 LYS A 248 12.57 47.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 46 ARG A 47 149.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTA A 1012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L9K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH S- REMARK 900 ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH GTP REMARK 900 AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P3L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH GPPPA REMARK 900 AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P3Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH GPPPG REMARK 900 AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P40 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH REMARK 900 7MEGPPPG AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: 2P41 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH REMARK 900 7MEGPPPG2'OME AND S-ADENOSYL-L-HOMOCYSTEINE REMARK 900 RELATED ID: NS5 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REMARK 999 REMARK 999 DIFFERENCES BETWEEN THIS STRUCTURE AND UNP ENTRY REMARK 999 Q9WLZ8_9FLAV REFLECT ACTUAL DIFFERENCES IN THE CDNA REMARK 999 USED FOR EXPRESSION OF THE VIRAL GENE IN E.COLI. DBREF 2P3O A 4 296 UNP Q9WLZ8 Q9WLZ8_9FLAV 2495 2787 SEQADV 2P3O MET A -8 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O ARG A -7 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O GLY A -6 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O SER A -5 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O HIS A -4 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O HIS A -3 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O HIS A -2 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O HIS A -1 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O HIS A 0 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O HIS A 1 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O GLY A 2 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O SER A 3 UNP Q9WLZ8 EXPRESSION TAG SEQADV 2P3O LEU A 70 UNP Q9WLZ8 MET 2561 SEE REMARK 999 SEQADV 2P3O ARG A 139 UNP Q9WLZ8 LYS 2630 SEE REMARK 999 SEQADV 2P3O SER A 173 UNP Q9WLZ8 ASN 2664 SEE REMARK 999 SEQADV 2P3O VAL A 180 UNP Q9WLZ8 ILE 2671 SEE REMARK 999 SEQADV 2P3O SER A 188 UNP Q9WLZ8 PRO 2679 SEE REMARK 999 SEQADV 2P3O HIS A 201 UNP Q9WLZ8 TYR 2692 SEE REMARK 999 SEQADV 2P3O THR A 271 UNP Q9WLZ8 ILE 2762 SEE REMARK 999 SEQRES 1 A 305 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASN SEQRES 2 A 305 ILE GLY GLU THR LEU GLY GLU LYS TRP LYS SER ARG LEU SEQRES 3 A 305 ASN ALA LEU GLY LYS SER GLU PHE GLN ILE TYR LYS LYS SEQRES 4 A 305 SER GLY ILE GLN GLU VAL ASP ARG THR LEU ALA LYS GLU SEQRES 5 A 305 GLY ILE LYS ARG GLY GLU THR ASP HIS HIS ALA VAL SER SEQRES 6 A 305 ARG GLY SER ALA LYS LEU ARG TRP PHE VAL GLU ARG ASN SEQRES 7 A 305 LEU VAL THR PRO GLU GLY LYS VAL VAL ASP LEU GLY CYS SEQRES 8 A 305 GLY ARG GLY GLY TRP SER TYR TYR CYS GLY GLY LEU LYS SEQRES 9 A 305 ASN VAL ARG GLU VAL LYS GLY LEU THR LYS GLY GLY PRO SEQRES 10 A 305 GLY HIS GLU GLU PRO ILE PRO MET SER THR TYR GLY TRP SEQRES 11 A 305 ASN LEU VAL ARG LEU GLN SER GLY VAL ASP VAL PHE PHE SEQRES 12 A 305 ILE PRO PRO GLU ARG CYS ASP THR LEU LEU CYS ASP ILE SEQRES 13 A 305 GLY GLU SER SER PRO ASN PRO THR VAL GLU ALA GLY ARG SEQRES 14 A 305 THR LEU ARG VAL LEU ASN LEU VAL GLU ASN TRP LEU SER SEQRES 15 A 305 ASN ASN THR GLN PHE CYS VAL LYS VAL LEU ASN PRO TYR SEQRES 16 A 305 MET SER SER VAL ILE GLU LYS MET GLU ALA LEU GLN ARG SEQRES 17 A 305 LYS HIS GLY GLY ALA LEU VAL ARG ASN PRO LEU SER ARG SEQRES 18 A 305 ASN SER THR HIS GLU MET TYR TRP VAL SER ASN ALA SER SEQRES 19 A 305 GLY ASN ILE VAL SER SER VAL ASN MET ILE SER ARG MET SEQRES 20 A 305 LEU ILE ASN ARG PHE THR MET ARG HIS LYS LYS ALA THR SEQRES 21 A 305 TYR GLU PRO ASP VAL ASP LEU GLY SER GLY THR ARG ASN SEQRES 22 A 305 ILE GLY ILE GLU SER GLU THR PRO ASN LEU ASP ILE ILE SEQRES 23 A 305 GLY LYS ARG ILE GLU LYS ILE LYS GLN GLU HIS GLU THR SEQRES 24 A 305 SER TRP HIS TYR ASP GLN HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET SO4 A1009 5 HET SO4 A1010 5 HET SAH A1001 26 HET CIT A1011 13 HET GTA A1012 51 HETNAM SO4 SULFATE ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CIT CITRIC ACID HETNAM GTA P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE HETSYN GTA 7-METHYL-GPPPA FORMUL 2 SO4 9(O4 S 2-) FORMUL 11 SAH C14 H20 N6 O5 S FORMUL 12 CIT C6 H8 O7 FORMUL 13 GTA C21 H30 N10 O17 P3 1+ FORMUL 14 HOH *27(H2 O) HELIX 1 1 THR A 8 ALA A 19 1 12 HELIX 2 2 GLY A 21 LYS A 29 1 9 HELIX 3 3 ARG A 38 ARG A 47 1 10 HELIX 4 4 ARG A 57 GLU A 67 1 11 HELIX 5 5 TRP A 87 GLY A 93 1 7 HELIX 6 6 GLY A 120 ASN A 122 5 3 HELIX 7 7 ASP A 131 ILE A 135 5 5 HELIX 8 8 ASN A 153 ASN A 170 1 18 HELIX 9 9 MET A 187 GLY A 202 1 16 HELIX 10 10 ASN A 227 PHE A 243 1 17 SHEET 1 A 2 GLN A 34 VAL A 36 0 SHEET 2 A 2 THR A 251 GLU A 253 1 O THR A 251 N GLU A 35 SHEET 1 B 7 VAL A 124 GLN A 127 0 SHEET 2 B 7 VAL A 97 LEU A 103 1 N GLY A 102 O ARG A 125 SHEET 3 B 7 GLY A 75 LEU A 80 1 N VAL A 77 O GLU A 99 SHEET 4 B 7 THR A 142 CYS A 145 1 O LEU A 144 N VAL A 78 SHEET 5 B 7 GLN A 177 VAL A 182 1 O LYS A 181 N CYS A 145 SHEET 6 B 7 MET A 218 VAL A 221 -1 O TRP A 220 N VAL A 180 SHEET 7 B 7 ALA A 204 VAL A 206 -1 N ALA A 204 O VAL A 221 SITE 1 AC1 5 GLN A 34 HIS A 52 TRP A 64 ARG A 68 SITE 2 AC1 5 ARG A 246 SITE 1 AC2 5 ARG A 38 LYS A 42 SER A 56 ARG A 57 SITE 2 AC2 5 ARG A 84 SITE 1 AC3 5 LYS A 105 HIS A 110 SER A 150 SER A 151 SITE 2 AC3 5 ARG A 160 SITE 1 AC4 3 HIS A 110 GLU A 149 SAH A1001 SITE 1 AC5 4 GLY A 109 HIS A 110 GLU A 111 SAH A1001 SITE 1 AC6 4 VAL A 229 SER A 230 ASN A 233 ARG A 237 SITE 1 AC7 4 LYS A 29 ARG A 57 ARG A 212 HOH A1019 SITE 1 AC8 3 GLU A 138 ARG A 139 HOH A1018 SITE 1 AC9 2 LYS A 30 ARG A 212 SITE 1 BC1 18 SER A 56 GLY A 58 GLY A 81 GLY A 86 SITE 2 BC1 18 TRP A 87 THR A 104 LYS A 105 HIS A 110 SITE 3 BC1 18 VAL A 130 ASP A 131 VAL A 132 PHE A 133 SITE 4 BC1 18 ASP A 146 SO4 A1005 SO4 A1006 CIT A1011 SITE 5 BC1 18 HOH A1035 HOH A1038 SITE 1 BC2 8 LYS A 105 ASP A 131 PHE A 133 PHE A 134 SITE 2 BC2 8 GLY A 159 ARG A 160 ARG A 163 SAH A1001 SITE 1 BC3 10 LYS A 14 LEU A 17 ASN A 18 LEU A 20 SITE 2 BC3 10 PHE A 25 LYS A 29 PRO A 108 SER A 150 SITE 3 BC3 10 SER A 151 PRO A 152 CRYST1 111.560 111.560 56.330 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008964 0.005175 0.000000 0.00000 SCALE2 0.000000 0.010350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017753 0.00000