PDB Short entry for 2PD4 HEADER OXIDOREDUCTASE 31-MAR-07 2PD4 TITLE CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ENOYL-ACYL CARRIER TITLE 2 PROTEIN REDUCTASE IN COMPLEX WITH HYDROXYDIPHENYL ETHER COMPOUNDS, TITLE 3 TRICLOSAN AND DICLOSAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ENOYL-ACYL CARRIER PROTEIN REDUCTASE, NADH- DEPENDENT ENOYL- COMPND 5 ACP REDUCTASE; COMPND 6 EC: 1.3.1.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-22B(+) KEYWDS ANTIBACTERIAL TARGET, HELICOBACTER PYLORI, TYPE II FATTY ACID KEYWDS 2 BIOSYNTHESIS, ENOYL-ACP-REDUCTASE, FABI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.LEE,J.H.MOON,S.W.SUH REVDAT 3 25-OCT-23 2PD4 1 REMARK REVDAT 2 24-JUN-08 2PD4 1 JRNL VERSN REVDAT 1 17-APR-07 2PD4 0 SPRSDE 17-APR-07 2PD4 1JW7 JRNL AUTH H.H.LEE,J.H.MOON,S.W.SUH JRNL TITL CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ENOYL-ACYL JRNL TITL 2 CARRIER PROTEIN REDUCTASE IN COMPLEX WITH HYDROXYDIPHENYL JRNL TITL 3 ETHER COMPOUNDS, TRICLOSAN AND DICLOSAN JRNL REF PROTEINS V. 69 691 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17879346 JRNL DOI 10.1002/PROT.21586 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 730444.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 39424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3908 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5717 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 597 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 240 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : 1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.540 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.520 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.510 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.160 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 33.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : DCL.PARAM REMARK 3 PARAMETER FILE 5 : NAD.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : DCL.TOP REMARK 3 TOPOLOGY FILE 5 : NAD.PAR REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0072 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39424 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ID CODE 1DFI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE BUFFER, PH 4.8, REMARK 280 100MM AMMONIUM SULFATE, 23%(W/V) PEG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.53600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 274 CB GLU B 274 CG -0.269 REMARK 500 GLU B 274 C GLN B 275 N -0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 274 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU B 274 CA - CB - CG ANGL. DEV. = 23.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 1.62 -69.46 REMARK 500 VAL A 65 -6.79 -58.07 REMARK 500 SER A 91 71.74 -119.55 REMARK 500 ALA A 93 143.74 -170.15 REMARK 500 VAL A 120 -60.40 -126.74 REMARK 500 ALA A 153 106.87 -32.42 REMARK 500 HIS A 154 19.07 54.55 REMARK 500 ASN A 156 -122.00 43.98 REMARK 500 ASP A 201 29.14 42.62 REMARK 500 ARG A 216 64.57 38.41 REMARK 500 LYS A 217 162.01 178.58 REMARK 500 VAL A 258 -27.07 -155.24 REMARK 500 GLU A 259 -52.19 -18.89 REMARK 500 ALA A 265 112.30 66.13 REMARK 500 LYS A 273 54.53 36.20 REMARK 500 GLU A 274 133.34 150.85 REMARK 500 ASN B 17 0.24 -64.40 REMARK 500 LEU B 63 104.48 -163.12 REMARK 500 VAL B 65 -6.45 -53.63 REMARK 500 SER B 91 67.23 -117.83 REMARK 500 ALA B 153 110.57 -34.91 REMARK 500 HIS B 154 23.27 49.87 REMARK 500 ASN B 156 -124.03 43.45 REMARK 500 ASP B 201 28.95 42.09 REMARK 500 VAL B 258 -29.30 -154.23 REMARK 500 GLU B 259 -55.19 -17.61 REMARK 500 ALA B 265 112.48 60.18 REMARK 500 LYS B 273 55.54 35.04 REMARK 500 GLU B 274 167.03 154.89 REMARK 500 ASN C 17 2.88 -69.24 REMARK 500 VAL C 65 -9.89 -57.04 REMARK 500 VAL C 120 -57.18 -124.12 REMARK 500 ALA C 153 116.62 -38.48 REMARK 500 HIS C 154 16.51 47.73 REMARK 500 ASN C 156 -124.18 38.02 REMARK 500 LYS C 217 158.09 178.28 REMARK 500 MET C 255 -176.61 -171.70 REMARK 500 VAL C 258 -29.93 -152.74 REMARK 500 GLU C 259 -55.15 -16.45 REMARK 500 ALA C 265 110.24 63.98 REMARK 500 LYS C 273 60.32 39.88 REMARK 500 GLU C 274 141.49 147.76 REMARK 500 ASN D 17 2.28 -66.32 REMARK 500 LEU D 55 31.68 -99.85 REMARK 500 VAL D 65 -8.62 -57.45 REMARK 500 VAL D 120 -57.65 -120.14 REMARK 500 ALA D 153 111.03 -38.51 REMARK 500 ASN D 156 -122.18 47.25 REMARK 500 ASP D 201 28.92 44.45 REMARK 500 VAL D 258 -27.34 -156.56 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 273 GLU B 274 145.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 2780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 3780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD D 4780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCN A 2414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCN B 3414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCN C 4414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCN D 5414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PD3 RELATED DB: PDB REMARK 900 TRICLOSAN COMPLEX DBREF 2PD4 A 1 275 UNP O24990 FABI_HELPY 1 275 DBREF 2PD4 B 1 275 UNP O24990 FABI_HELPY 1 275 DBREF 2PD4 C 1 275 UNP O24990 FABI_HELPY 1 275 DBREF 2PD4 D 1 275 UNP O24990 FABI_HELPY 1 275 SEQRES 1 A 275 MET GLY PHE LEU LYS GLY LYS LYS GLY LEU ILE VAL GLY SEQRES 2 A 275 VAL ALA ASN ASN LYS SER ILE ALA TYR GLY ILE ALA GLN SEQRES 3 A 275 SER CYS PHE ASN GLN GLY ALA THR LEU ALA PHE THR TYR SEQRES 4 A 275 LEU ASN GLU SER LEU GLU LYS ARG VAL ARG PRO ILE ALA SEQRES 5 A 275 GLN GLU LEU ASN SER PRO TYR VAL TYR GLU LEU ASP VAL SEQRES 6 A 275 SER LYS GLU GLU HIS PHE LYS SER LEU TYR ASN SER VAL SEQRES 7 A 275 LYS LYS ASP LEU GLY SER LEU ASP PHE ILE VAL HIS SER SEQRES 8 A 275 VAL ALA PHE ALA PRO LYS GLU ALA LEU GLU GLY SER LEU SEQRES 9 A 275 LEU GLU THR SER LYS SER ALA PHE ASN THR ALA MET GLU SEQRES 10 A 275 ILE SER VAL TYR SER LEU ILE GLU LEU THR ASN THR LEU SEQRES 11 A 275 LYS PRO LEU LEU ASN ASN GLY ALA SER VAL LEU THR LEU SEQRES 12 A 275 SER TYR LEU GLY SER THR LYS TYR MET ALA HIS TYR ASN SEQRES 13 A 275 VAL MET GLY LEU ALA LYS ALA ALA LEU GLU SER ALA VAL SEQRES 14 A 275 ARG TYR LEU ALA VAL ASP LEU GLY LYS HIS HIS ILE ARG SEQRES 15 A 275 VAL ASN ALA LEU SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 A 275 SER SER GLY ILE ALA ASP PHE ARG MET ILE LEU LYS TRP SEQRES 17 A 275 ASN GLU ILE ASN ALA PRO LEU ARG LYS ASN VAL SER LEU SEQRES 18 A 275 GLU GLU VAL GLY ASN ALA GLY MET TYR LEU LEU SER SER SEQRES 19 A 275 LEU SER SER GLY VAL SER GLY GLU VAL HIS PHE VAL ASP SEQRES 20 A 275 ALA GLY TYR HIS VAL MET GLY MET GLY ALA VAL GLU GLU SEQRES 21 A 275 LYS ASP ASN LYS ALA THR LEU LEU TRP ASP LEU HIS LYS SEQRES 22 A 275 GLU GLN SEQRES 1 B 275 MET GLY PHE LEU LYS GLY LYS LYS GLY LEU ILE VAL GLY SEQRES 2 B 275 VAL ALA ASN ASN LYS SER ILE ALA TYR GLY ILE ALA GLN SEQRES 3 B 275 SER CYS PHE ASN GLN GLY ALA THR LEU ALA PHE THR TYR SEQRES 4 B 275 LEU ASN GLU SER LEU GLU LYS ARG VAL ARG PRO ILE ALA SEQRES 5 B 275 GLN GLU LEU ASN SER PRO TYR VAL TYR GLU LEU ASP VAL SEQRES 6 B 275 SER LYS GLU GLU HIS PHE LYS SER LEU TYR ASN SER VAL SEQRES 7 B 275 LYS LYS ASP LEU GLY SER LEU ASP PHE ILE VAL HIS SER SEQRES 8 B 275 VAL ALA PHE ALA PRO LYS GLU ALA LEU GLU GLY SER LEU SEQRES 9 B 275 LEU GLU THR SER LYS SER ALA PHE ASN THR ALA MET GLU SEQRES 10 B 275 ILE SER VAL TYR SER LEU ILE GLU LEU THR ASN THR LEU SEQRES 11 B 275 LYS PRO LEU LEU ASN ASN GLY ALA SER VAL LEU THR LEU SEQRES 12 B 275 SER TYR LEU GLY SER THR LYS TYR MET ALA HIS TYR ASN SEQRES 13 B 275 VAL MET GLY LEU ALA LYS ALA ALA LEU GLU SER ALA VAL SEQRES 14 B 275 ARG TYR LEU ALA VAL ASP LEU GLY LYS HIS HIS ILE ARG SEQRES 15 B 275 VAL ASN ALA LEU SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 B 275 SER SER GLY ILE ALA ASP PHE ARG MET ILE LEU LYS TRP SEQRES 17 B 275 ASN GLU ILE ASN ALA PRO LEU ARG LYS ASN VAL SER LEU SEQRES 18 B 275 GLU GLU VAL GLY ASN ALA GLY MET TYR LEU LEU SER SER SEQRES 19 B 275 LEU SER SER GLY VAL SER GLY GLU VAL HIS PHE VAL ASP SEQRES 20 B 275 ALA GLY TYR HIS VAL MET GLY MET GLY ALA VAL GLU GLU SEQRES 21 B 275 LYS ASP ASN LYS ALA THR LEU LEU TRP ASP LEU HIS LYS SEQRES 22 B 275 GLU GLN SEQRES 1 C 275 MET GLY PHE LEU LYS GLY LYS LYS GLY LEU ILE VAL GLY SEQRES 2 C 275 VAL ALA ASN ASN LYS SER ILE ALA TYR GLY ILE ALA GLN SEQRES 3 C 275 SER CYS PHE ASN GLN GLY ALA THR LEU ALA PHE THR TYR SEQRES 4 C 275 LEU ASN GLU SER LEU GLU LYS ARG VAL ARG PRO ILE ALA SEQRES 5 C 275 GLN GLU LEU ASN SER PRO TYR VAL TYR GLU LEU ASP VAL SEQRES 6 C 275 SER LYS GLU GLU HIS PHE LYS SER LEU TYR ASN SER VAL SEQRES 7 C 275 LYS LYS ASP LEU GLY SER LEU ASP PHE ILE VAL HIS SER SEQRES 8 C 275 VAL ALA PHE ALA PRO LYS GLU ALA LEU GLU GLY SER LEU SEQRES 9 C 275 LEU GLU THR SER LYS SER ALA PHE ASN THR ALA MET GLU SEQRES 10 C 275 ILE SER VAL TYR SER LEU ILE GLU LEU THR ASN THR LEU SEQRES 11 C 275 LYS PRO LEU LEU ASN ASN GLY ALA SER VAL LEU THR LEU SEQRES 12 C 275 SER TYR LEU GLY SER THR LYS TYR MET ALA HIS TYR ASN SEQRES 13 C 275 VAL MET GLY LEU ALA LYS ALA ALA LEU GLU SER ALA VAL SEQRES 14 C 275 ARG TYR LEU ALA VAL ASP LEU GLY LYS HIS HIS ILE ARG SEQRES 15 C 275 VAL ASN ALA LEU SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 C 275 SER SER GLY ILE ALA ASP PHE ARG MET ILE LEU LYS TRP SEQRES 17 C 275 ASN GLU ILE ASN ALA PRO LEU ARG LYS ASN VAL SER LEU SEQRES 18 C 275 GLU GLU VAL GLY ASN ALA GLY MET TYR LEU LEU SER SER SEQRES 19 C 275 LEU SER SER GLY VAL SER GLY GLU VAL HIS PHE VAL ASP SEQRES 20 C 275 ALA GLY TYR HIS VAL MET GLY MET GLY ALA VAL GLU GLU SEQRES 21 C 275 LYS ASP ASN LYS ALA THR LEU LEU TRP ASP LEU HIS LYS SEQRES 22 C 275 GLU GLN SEQRES 1 D 275 MET GLY PHE LEU LYS GLY LYS LYS GLY LEU ILE VAL GLY SEQRES 2 D 275 VAL ALA ASN ASN LYS SER ILE ALA TYR GLY ILE ALA GLN SEQRES 3 D 275 SER CYS PHE ASN GLN GLY ALA THR LEU ALA PHE THR TYR SEQRES 4 D 275 LEU ASN GLU SER LEU GLU LYS ARG VAL ARG PRO ILE ALA SEQRES 5 D 275 GLN GLU LEU ASN SER PRO TYR VAL TYR GLU LEU ASP VAL SEQRES 6 D 275 SER LYS GLU GLU HIS PHE LYS SER LEU TYR ASN SER VAL SEQRES 7 D 275 LYS LYS ASP LEU GLY SER LEU ASP PHE ILE VAL HIS SER SEQRES 8 D 275 VAL ALA PHE ALA PRO LYS GLU ALA LEU GLU GLY SER LEU SEQRES 9 D 275 LEU GLU THR SER LYS SER ALA PHE ASN THR ALA MET GLU SEQRES 10 D 275 ILE SER VAL TYR SER LEU ILE GLU LEU THR ASN THR LEU SEQRES 11 D 275 LYS PRO LEU LEU ASN ASN GLY ALA SER VAL LEU THR LEU SEQRES 12 D 275 SER TYR LEU GLY SER THR LYS TYR MET ALA HIS TYR ASN SEQRES 13 D 275 VAL MET GLY LEU ALA LYS ALA ALA LEU GLU SER ALA VAL SEQRES 14 D 275 ARG TYR LEU ALA VAL ASP LEU GLY LYS HIS HIS ILE ARG SEQRES 15 D 275 VAL ASN ALA LEU SER ALA GLY PRO ILE ARG THR LEU ALA SEQRES 16 D 275 SER SER GLY ILE ALA ASP PHE ARG MET ILE LEU LYS TRP SEQRES 17 D 275 ASN GLU ILE ASN ALA PRO LEU ARG LYS ASN VAL SER LEU SEQRES 18 D 275 GLU GLU VAL GLY ASN ALA GLY MET TYR LEU LEU SER SER SEQRES 19 D 275 LEU SER SER GLY VAL SER GLY GLU VAL HIS PHE VAL ASP SEQRES 20 D 275 ALA GLY TYR HIS VAL MET GLY MET GLY ALA VAL GLU GLU SEQRES 21 D 275 LYS ASP ASN LYS ALA THR LEU LEU TRP ASP LEU HIS LYS SEQRES 22 D 275 GLU GLN HET NAD A1780 44 HET DCN A2414 16 HET NAD B2780 44 HET DCN B3414 16 HET NAD C3780 44 HET DCN C4414 16 HET NAD D4780 44 HET DCN D5414 16 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM DCN DICLOSAN FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 6 DCN 4(C12 H8 CL2 O2) FORMUL 13 HOH *218(H2 O) HELIX 1 1 SER A 19 ASN A 30 1 12 HELIX 2 2 LEU A 44 LEU A 55 1 12 HELIX 3 3 LYS A 67 LEU A 82 1 16 HELIX 4 4 PRO A 96 GLU A 101 5 6 HELIX 5 5 SER A 103 THR A 107 5 5 HELIX 6 6 SER A 108 VAL A 120 1 13 HELIX 7 7 VAL A 120 LYS A 131 1 12 HELIX 8 8 TYR A 145 THR A 149 5 5 HELIX 9 9 TYR A 155 LYS A 178 1 24 HELIX 10 10 ALA A 195 ILE A 199 5 5 HELIX 11 11 ASP A 201 ALA A 213 1 13 HELIX 12 12 SER A 220 SER A 233 1 14 HELIX 13 13 SER A 234 SER A 237 5 4 HELIX 14 14 GLY A 249 MET A 253 5 5 HELIX 15 15 LEU A 267 HIS A 272 1 6 HELIX 16 16 SER B 19 ASN B 30 1 12 HELIX 17 17 ASN B 41 LEU B 55 1 15 HELIX 18 18 LYS B 67 LEU B 82 1 16 HELIX 19 19 SER B 103 THR B 107 5 5 HELIX 20 20 SER B 108 VAL B 120 1 13 HELIX 21 21 VAL B 120 LYS B 131 1 12 HELIX 22 22 TYR B 145 THR B 149 5 5 HELIX 23 23 TYR B 155 LYS B 178 1 24 HELIX 24 24 ALA B 195 ILE B 199 5 5 HELIX 25 25 ASP B 201 ALA B 213 1 13 HELIX 26 26 SER B 220 SER B 233 1 14 HELIX 27 27 SER B 234 SER B 237 5 4 HELIX 28 28 GLY B 249 MET B 253 5 5 HELIX 29 29 LEU B 267 HIS B 272 1 6 HELIX 30 30 SER C 19 ASN C 30 1 12 HELIX 31 31 ASN C 41 LEU C 55 1 15 HELIX 32 32 LYS C 67 LEU C 82 1 16 HELIX 33 33 PRO C 96 GLU C 101 5 6 HELIX 34 34 SER C 103 THR C 107 5 5 HELIX 35 35 SER C 108 VAL C 120 1 13 HELIX 36 36 VAL C 120 LYS C 131 1 12 HELIX 37 37 TYR C 145 THR C 149 5 5 HELIX 38 38 TYR C 155 LYS C 178 1 24 HELIX 39 39 ALA C 195 ILE C 199 5 5 HELIX 40 40 ASP C 201 ALA C 213 1 13 HELIX 41 41 SER C 220 SER C 233 1 14 HELIX 42 42 SER C 234 SER C 237 5 4 HELIX 43 43 GLY C 249 MET C 253 5 5 HELIX 44 44 LEU C 267 HIS C 272 1 6 HELIX 45 45 SER D 19 ASN D 30 1 12 HELIX 46 46 ASN D 41 LEU D 55 1 15 HELIX 47 47 LYS D 67 LEU D 82 1 16 HELIX 48 48 SER D 103 THR D 107 5 5 HELIX 49 49 SER D 108 VAL D 120 1 13 HELIX 50 50 VAL D 120 LYS D 131 1 12 HELIX 51 51 TYR D 145 THR D 149 5 5 HELIX 52 52 TYR D 155 LYS D 178 1 24 HELIX 53 53 THR D 193 GLY D 198 1 6 HELIX 54 54 ASP D 201 ALA D 213 1 13 HELIX 55 55 SER D 220 SER D 233 1 14 HELIX 56 56 SER D 234 SER D 237 5 4 HELIX 57 57 GLY D 249 MET D 253 5 5 HELIX 58 58 LEU D 267 HIS D 272 1 6 SHEET 1 A 7 VAL A 60 GLU A 62 0 SHEET 2 A 7 THR A 34 TYR A 39 1 N PHE A 37 O TYR A 61 SHEET 3 A 7 LYS A 8 VAL A 12 1 N ILE A 11 O ALA A 36 SHEET 4 A 7 LEU A 85 HIS A 90 1 O ASP A 86 N LYS A 8 SHEET 5 A 7 LEU A 134 SER A 144 1 O LEU A 141 N HIS A 90 SHEET 6 A 7 ARG A 182 ALA A 188 1 O ARG A 182 N ALA A 138 SHEET 7 A 7 VAL A 243 VAL A 246 1 O HIS A 244 N SER A 187 SHEET 1 B 7 VAL B 60 GLU B 62 0 SHEET 2 B 7 THR B 34 TYR B 39 1 N PHE B 37 O TYR B 61 SHEET 3 B 7 LYS B 8 VAL B 12 1 N ILE B 11 O ALA B 36 SHEET 4 B 7 LEU B 85 HIS B 90 1 O ASP B 86 N LYS B 8 SHEET 5 B 7 LEU B 134 SER B 144 1 O LEU B 141 N HIS B 90 SHEET 6 B 7 ARG B 182 ALA B 188 1 O ARG B 182 N VAL B 140 SHEET 7 B 7 VAL B 243 VAL B 246 1 O HIS B 244 N SER B 187 SHEET 1 C 7 VAL C 60 GLU C 62 0 SHEET 2 C 7 THR C 34 TYR C 39 1 N PHE C 37 O TYR C 61 SHEET 3 C 7 LYS C 8 VAL C 12 1 N ILE C 11 O ALA C 36 SHEET 4 C 7 LEU C 85 HIS C 90 1 O ASP C 86 N LYS C 8 SHEET 5 C 7 LEU C 134 SER C 144 1 O LEU C 141 N HIS C 90 SHEET 6 C 7 ARG C 182 ALA C 188 1 O ARG C 182 N VAL C 140 SHEET 7 C 7 VAL C 243 VAL C 246 1 O HIS C 244 N SER C 187 SHEET 1 D 7 VAL D 60 GLU D 62 0 SHEET 2 D 7 THR D 34 TYR D 39 1 N PHE D 37 O TYR D 61 SHEET 3 D 7 LYS D 8 VAL D 12 1 N ILE D 11 O ALA D 36 SHEET 4 D 7 LEU D 85 HIS D 90 1 O ASP D 86 N LYS D 8 SHEET 5 D 7 LEU D 134 SER D 144 1 O LEU D 141 N HIS D 90 SHEET 6 D 7 ARG D 182 ALA D 188 1 O ARG D 182 N VAL D 140 SHEET 7 D 7 VAL D 243 VAL D 246 1 O HIS D 244 N SER D 187 SITE 1 AC1 26 GLY A 13 VAL A 14 ALA A 15 SER A 19 SITE 2 AC1 26 ILE A 20 LEU A 40 LEU A 44 LEU A 63 SITE 3 AC1 26 ASP A 64 VAL A 65 SER A 91 VAL A 92 SITE 4 AC1 26 ALA A 93 ILE A 118 SER A 144 LYS A 162 SITE 5 AC1 26 ALA A 188 GLY A 189 PRO A 190 ILE A 191 SITE 6 AC1 26 THR A 193 ALA A 195 PHE A 202 DCN A2414 SITE 7 AC1 26 HOH A2434 HOH A2444 SITE 1 AC2 27 GLY B 13 VAL B 14 ALA B 15 SER B 19 SITE 2 AC2 27 ILE B 20 LEU B 40 LEU B 44 LEU B 63 SITE 3 AC2 27 ASP B 64 VAL B 65 SER B 91 VAL B 92 SITE 4 AC2 27 ALA B 93 LEU B 143 SER B 144 TYR B 145 SITE 5 AC2 27 LYS B 162 GLY B 189 PRO B 190 ILE B 191 SITE 6 AC2 27 THR B 193 ALA B 195 DCN B3414 HOH B3415 SITE 7 AC2 27 HOH B3417 HOH B3443 HOH B3467 SITE 1 AC3 26 GLY C 13 VAL C 14 ALA C 15 SER C 19 SITE 2 AC3 26 ILE C 20 LEU C 40 LEU C 44 LEU C 63 SITE 3 AC3 26 ASP C 64 VAL C 65 SER C 91 VAL C 92 SITE 4 AC3 26 ALA C 93 LEU C 143 SER C 144 TYR C 145 SITE 5 AC3 26 LYS C 162 ALA C 188 GLY C 189 PRO C 190 SITE 6 AC3 26 ILE C 191 THR C 193 LEU C 194 ALA C 195 SITE 7 AC3 26 DCN C4414 HOH C4428 SITE 1 AC4 28 GLY D 13 ALA D 15 SER D 19 ILE D 20 SITE 2 AC4 28 LEU D 40 LEU D 44 LEU D 63 ASP D 64 SITE 3 AC4 28 VAL D 65 SER D 91 VAL D 92 ALA D 93 SITE 4 AC4 28 ILE D 118 LEU D 143 SER D 144 TYR D 145 SITE 5 AC4 28 LYS D 162 ALA D 188 GLY D 189 PRO D 190 SITE 6 AC4 28 ILE D 191 THR D 193 LEU D 194 ALA D 195 SITE 7 AC4 28 PHE D 202 DCN D5414 HOH D5419 HOH D5424 SITE 1 AC5 10 ALA A 93 ALA A 95 LEU A 100 TYR A 145 SITE 2 AC5 10 TYR A 155 MET A 158 ALA A 195 ILE A 199 SITE 3 AC5 10 PHE A 202 NAD A1780 SITE 1 AC6 11 ALA B 93 PHE B 94 ALA B 95 LEU B 100 SITE 2 AC6 11 TYR B 145 TYR B 155 MET B 158 ALA B 195 SITE 3 AC6 11 ILE B 199 PHE B 202 NAD B2780 SITE 1 AC7 11 ALA C 93 PHE C 94 ALA C 95 LEU C 100 SITE 2 AC7 11 TYR C 145 TYR C 155 MET C 158 ALA C 195 SITE 3 AC7 11 ILE C 199 PHE C 202 NAD C3780 SITE 1 AC8 10 ALA D 93 ALA D 95 LEU D 100 TYR D 145 SITE 2 AC8 10 TYR D 155 MET D 158 ALA D 195 ILE D 199 SITE 3 AC8 10 PHE D 202 NAD D4780 CRYST1 73.253 95.072 75.019 90.00 106.53 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013651 0.000000 0.004051 0.00000 SCALE2 0.000000 0.010518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013905 0.00000